Tdro023754.1
Basic Information
- Insect
- Trichopria drosophilae
- Gene Symbol
- -
- Assembly
- GCA_030407085.1
- Location
- CM059582.1:198955181-198965796[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.9e-07 0.00016 24.2 0.7 1 23 323 345 323 345 0.99 2 18 1.9e-06 0.0008 22.0 1.1 1 23 351 374 351 374 0.95 3 18 0.00017 0.071 15.9 0.3 1 23 380 402 380 402 0.98 4 18 5.4e-06 0.0022 20.6 0.5 1 23 408 430 408 430 0.97 5 18 0.00029 0.12 15.2 4.0 1 23 436 458 436 458 0.97 6 18 5.2 2.2e+03 1.8 0.4 1 8 464 471 464 472 0.89 7 18 0.022 9.3 9.2 1.2 2 23 483 505 482 505 0.90 8 18 0.0039 1.6 11.6 1.2 1 23 534 556 534 556 0.98 9 18 0.0011 0.45 13.4 5.3 1 23 562 585 562 585 0.94 10 18 5.4e-06 0.0022 20.6 1.2 1 23 591 613 591 613 0.97 11 18 1.6e-05 0.0067 19.1 3.8 1 23 619 641 619 641 0.98 12 18 0.0025 1 12.3 0.3 1 23 647 669 647 669 0.95 13 18 0.0059 2.5 11.1 1.2 1 20 675 694 675 696 0.93 14 18 0.0011 0.47 13.3 1.9 1 23 724 746 724 746 0.98 15 18 0.0019 0.79 12.6 1.8 2 23 753 775 752 776 0.93 16 18 0.019 7.9 9.5 0.1 1 23 781 803 781 803 0.95 17 18 3.2e-05 0.013 18.2 2.9 1 23 809 831 809 831 0.92 18 18 1.4e-06 0.0006 22.4 2.0 2 23 838 859 837 859 0.96
Sequence Information
- Coding Sequence
- atgCTGCAGGATCCTGGGGATGAACTCAACACCAAAATGACTGTTGAGAACAACATGAGTATTAGCGAACAGTATTATATGGTGACTGCTGTCACTGACGAATTTCCTCGAACCACAATGACAAATACTGAAACTATGGAATCAACCGCTATGACTTGTCGTGTATGTGCCACTGCCACACAACATTTCATTCCCATATTCATGGGTGAAGGTTTAGTGCATCAATTGTGTGACAAGATACAGAAGTACTTACCTATCGAAGTTAAGGAAACTGATAAATTGCCGTTACAAATGTGTTTTCATTGTACGACAACATTATTAGCGTGGCATGAGATTTCTGAAGGTTGTCTGAATGCTCAACAACGTTTGCATCAAATGCAGGCGCAGTTGGAAGAAAAACAGTCATTCTACAATTCACATACTTTGGAAACAGTCGACACTGCAACCGAAGCAATCCTACAAGACGAGTTCGTAGAACAAGCAGTATTAGAAATTTCTCAAGAATTCGAAACTGATGTGATAGAAACTAAAGGCGGAATGGAAATATCGGATCAAATTTTGGATCTGGTGCCTACCGTGTCTCCAGAAATTGGAGAATCAATTTTAACGGAAATTATATGCGAAGAAACAAGTCAAGTTTTAAGTCCACTGAATGTTATGCCGTGTACACCGACTGAAACGACTAAAGTAGAGACAGAAGCGTTCAATTCGGATGAATTAAACAGCTGCAGAAGTGGTGTCAAGTTCCGACTGTTTTACAGGTCTGATAGTGTCGAGTCTCCGGAAAAAACAAACCTTGAGAAACAAGAATCGAAAGATAGAAGCACCGAAAAAAGTAAGGATGAAACTGCATGGTTAAGTTTCGCAGATCTGGCGCAGATGCAACGGTGGTCTGATTTGACACAAACCCCAAGTGAATTACAGAAAGTTCGTAATGAAGAATCCAGCGAGAAAAAGGATCCTGTTTATCAGTGCGAGGAATGTGGTCGAGCATTCAAGTTGAAAGATTCGTACAATCGACACTTACGAATCCACAAAGATGAACGACCATTCACCTGCCATGTATGCGGCAAACAATTTCGAGATTCCGGAGGATTGTCGAGGCACTTGAAGGATGTCCATGCAAAAgtaaaaaacttttcttgcgACATTTGTGGTAGACGTTTCGCTTCCAGAGCAACCAGAGACGATCATCAACGGATACACACCGGTGAAAGACCTTACGTTTGTGATGTCTGCGGCAAGGCTTTCAAATCGAAAGCTTCGTTGTACACCCACAGTAAATTACACACTGACGACTTCCCACATTCTTGTAACTACTGCAAGAAAAAGTTCCGTCGTAAACAAGAAGTTTTAGCTCACGTAACTACACACACGGGAGAAAAAAACTTTCAGTGCGACATTTGTTCGAAAAGGCATGACGTAAGACACGAAGTCGAAAATCTGTACTGCGAACACTGTGATCATTCAACAATAAACAGGAACGACTTAGTTCTTCACATAGTCGAGAAGCATCCGGGATTgatcaacaaaaaattgaagaaacacGAATACGAAATCGTGAAGAAAGCTCGAGTGGTAGTAGATGACAAAACATGTTACTACTGCAGCGAGTGTCGAAAGGTTTTGTTTTCCCCATACACATTTCTTTTACATACTCGCATACACACTGGAGAACGACCACATGCGTGTCATCTGTGTAACAAATCGTTTCGAGTGAAGCACGGTCTTGTGAAACATGTTAACAATACacacaagaaaattaaaaaccatCCTTGTGATATTTGCGACAAGAAGTTTGCAACAAAGAAAAATGTCGAAGACCATCGTAGGATTCATACAGGAGAGCGACCGTACATGTGTAATGTATGTGGAAAGTTATTCACGCATAAATCATCACTTTTCTCTCACAACCGAAGCCATTCCGACAGCTTTCCTTTTCTGTGCGATTATTGTCAGAAAGGTTTTCGTACCAAAGCGATTGTAGCGGTTCATATCAAGACTCATACAGGGGAGAAACCTTACGCTTGTGACATCTGCGAAAGGAACTTCCGAACAAAGTTTGAGATTCGAAGTCATCGATGTGGAAAACCAGCGAAAATTGAACGAACTAAGGAACAATTGATGGAGATAGAAAATTCCAAGACTTTAGTAGGaaaagtaacacattttaagTGTCCGGACTGCCCTCGACTGTCAAGGacaacatacaattttttaaaacatcgtTCGAGTCACACCAACGAGAAACCGTGGACTTGTAATATTTGCGATAAGGGTTTTAAGAGTGACTTCGCAATGAAAcgacattccaaaaacgtaCATCATGGAGTTAAAGAGTTCCAGTGCGAGATTTGTGGTCGAATGTTAGCTACGAAAATTGCCAGAGATGAACATAGAAATGTTCATACCAATGAGCGGCCTTATCTTTGTGATATTTGTCCGAAATCTTTCAAGCAGAGGTCTTCGCTCACCATTCACAAACATTTCCATTCGAAGGATATTTCTTTACCTTGCGATAAGTGCGACAAGTGTTTTGTACGaaaaggagacttgaaaaaacatcggTTGATCCATACAAGATCGATATCGACGGTGGTTCCTCTCGAAGGAATGGAGATACTGATTATCTCGTGCATAGAATGCGACTGTGGTTCCTCTCGAAGGAACGGAGATACTGATTATCTCGTGCATAGAATGCAACTGTGGTTCCTCCCGAAGGAATGGAGATACTGA
- Protein Sequence
- MLQDPGDELNTKMTVENNMSISEQYYMVTAVTDEFPRTTMTNTETMESTAMTCRVCATATQHFIPIFMGEGLVHQLCDKIQKYLPIEVKETDKLPLQMCFHCTTTLLAWHEISEGCLNAQQRLHQMQAQLEEKQSFYNSHTLETVDTATEAILQDEFVEQAVLEISQEFETDVIETKGGMEISDQILDLVPTVSPEIGESILTEIICEETSQVLSPLNVMPCTPTETTKVETEAFNSDELNSCRSGVKFRLFYRSDSVESPEKTNLEKQESKDRSTEKSKDETAWLSFADLAQMQRWSDLTQTPSELQKVRNEESSEKKDPVYQCEECGRAFKLKDSYNRHLRIHKDERPFTCHVCGKQFRDSGGLSRHLKDVHAKVKNFSCDICGRRFASRATRDDHQRIHTGERPYVCDVCGKAFKSKASLYTHSKLHTDDFPHSCNYCKKKFRRKQEVLAHVTTHTGEKNFQCDICSKRHDVRHEVENLYCEHCDHSTINRNDLVLHIVEKHPGLINKKLKKHEYEIVKKARVVVDDKTCYYCSECRKVLFSPYTFLLHTRIHTGERPHACHLCNKSFRVKHGLVKHVNNTHKKIKNHPCDICDKKFATKKNVEDHRRIHTGERPYMCNVCGKLFTHKSSLFSHNRSHSDSFPFLCDYCQKGFRTKAIVAVHIKTHTGEKPYACDICERNFRTKFEIRSHRCGKPAKIERTKEQLMEIENSKTLVGKVTHFKCPDCPRLSRTTYNFLKHRSSHTNEKPWTCNICDKGFKSDFAMKRHSKNVHHGVKEFQCEICGRMLATKIARDEHRNVHTNERPYLCDICPKSFKQRSSLTIHKHFHSKDISLPCDKCDKCFVRKGDLKKHRLIHTRSISTVVPLEGMEILIISCIECDCGSSRRNGDTDYLVHRMQLWFLPKEWRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -