Tdro072872.1
Basic Information
- Insect
- Trichopria drosophilae
- Gene Symbol
- -
- Assembly
- GCA_030407085.1
- Location
- CM059586.1:48640103-48640609[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-09 2.6e-06 29.4 0.0 2 40 31 68 30 72 0.89 2 2 7.5 1.4e+04 -1.8 0.0 16 22 145 151 142 151 0.90
Sequence Information
- Coding Sequence
- ATGGCAAATCAGAACcgcaaaaaaaggaaaagtaaaaaagtgCAATCGTGTAAAGGAAATGTGACAAAAAGAAAGCTGTTTTTGTATTCGCCCGAAGACGTTCGCTCTGCTTTGATCGCCGTACAAAACGGAACAAATATTTATCACGCCAGCAAATTATACAACGTACCCAGATCGACATTAAGACACAAGGTTCGAGGAAAAGCTCCATTAACCTCTGGTCGAGTCGGTCCAATGCCAATTTTAGGTTCGGCAGTAGAATCTATGTTGGTCGATTGGCTGCTACAAATGTGCAAAATGGGATTTCCTCTTACAAGAGATATTTTAATAAGTGTAGTGAAAAGGTATATTGAAACGGAAAATATACGAACTCCTTTTAAAAACAACTGTCCTGGTCGAAAATGGTTCGATAGTTTTTTGGAGCGGCACCCTCAGCTTTCTGTAAACAAAGCTGAATATTTGAGTAAAACCCGAGCAAACATATCAGAAGAGTACATCCGTAAGTGA
- Protein Sequence
- MANQNRKKRKSKKVQSCKGNVTKRKLFLYSPEDVRSALIAVQNGTNIYHASKLYNVPRSTLRHKVRGKAPLTSGRVGPMPILGSAVESMLVDWLLQMCKMGFPLTRDILISVVKRYIETENIRTPFKNNCPGRKWFDSFLERHPQLSVNKAEYLSKTRANISEEYIRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -