Tdro044151.1
Basic Information
- Insect
- Trichopria drosophilae
- Gene Symbol
- lov
- Assembly
- GCA_030407085.1
- Location
- CM059584.1:9809708-9824877[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.8e-05 0.092 14.8 0.0 2 38 205 241 204 247 0.81 2 4 5.2e-10 9.9e-07 30.7 0.0 6 41 259 294 255 298 0.84 3 4 0.016 30 6.7 0.0 7 34 312 338 309 344 0.78 4 4 1.9e-10 3.6e-07 32.1 0.0 5 39 370 404 369 408 0.93
Sequence Information
- Coding Sequence
- ATGTCCATGACGGACGGCCCCGGGCAAACGGATTCGAATTACTATTTCAAATGGAACGACTATCAGAATCACGTTACCGAAGTTGCTCGTCAACTTCTCGAAAACGATTCTTTGGTCGACGTTACTCTCATTGCCGAACGCGAGCGAATTCCCGCTCACAGAATCGTTCTTTCGGCCTGCAGTACTTTATTCCAAGAGGTTCTCAGTCAAGTTACAGAAGATCATCCAACAATCATCATAAGTGACATCTCAGCCCAGGATGTCAGATCCATTGTTGAATTTAGTTACAACGGAGAAGTTAGGATTCCGgtagaaaatattaacaatctACTCGACGCTGCTCATTCCTTAAGAATCATCGGTCTTATGGACatTGATGGTTTAGATGAAAGCGACACAGGCATTCAGTGCAAAGACCTGAATCAAAGCGGCATCGAAAGCTTAGCAGAGTTGAACGATATGGAAGATTCAGTACTTCGAGAACTCGAACAGGAATACGAagaagataaaattataataactacCAGCCCTGTAGAACCCGAGAATAATTCCATTCTATCTCCAGGCAAAAAAAGAAAACGGAGGCGAGATTCCAATAAAAGGGATTACAGCGAAGAAATGTTAATCTCTGCCATAACCGACTTAAGGGCTGGACAGACGTTAATAGAAGCTGCAACAAAGAATAACATTCCGCGATCTACTCTTTACATGCGTGCAAAGACGTTAGGAATTCATCTCAACGCATCGAGGAACGAGTATCCACCGGAATGTGTAAAAGCAGCGATAGATGCTGTAATGAGTGGTTCGAGCTTGCAACAAGCTTCGGAAAATTACAGGATTCCGAAGACGGTTTTATGGAGAAGAATTCAGAAGGAAGGTTATCAAGTGTTCCGAGCCGACATGAAAAGAACGTACTGTACAGAGAAACGAGAAGCAGCGGTGAAAGCTCTCGCAAGAGGAGAAAATTTAACCAAAGTTGCTTCAGAATTTcagATTCCAAAAACGACATTATTTAGAGATAAAGCTCGGTTAGTAGACGAAGGGAAATTGCCTCTGTCATTTTGGAAAAAGCGAAAGACAGAAAGCGAAGAGTTAAAAAAGTGTCGTTTAGAGGAAGCAGTGGCTGCTTGTAAAGACGGTCAAATGTCGCAAGCCACTGCTTCGTTGGTATATCGGGTTCCGAAAACAACAATTTGGAGGCGACTTCAACAAGAAGGGAAAAAATACGAAAGGCCAGTAATAAGTAGAAGACAACCTAAACCACTTATATTGCCAGTGAAAGAAAACAAGATCGAAGAAGGCGAATTCGAGACATACTGCGAGGTACCGACAGAAATCCCTATTACATACATCGATGGAAGTACGATTCCGGAAGATTCAGTCATTATTTTAACTACCGAGGATGTAGACGCACTGAATTTGGAAGAGGGTAGGCAAATCGTTGTAAATTCTGACGCCGGTTCCGAATTCATATCTTGCAACATCAGTTTAGAAGACGGAACGGAGTTTTGTCCGTCGAAAAGTTAA
- Protein Sequence
- MSMTDGPGQTDSNYYFKWNDYQNHVTEVARQLLENDSLVDVTLIAERERIPAHRIVLSACSTLFQEVLSQVTEDHPTIIISDISAQDVRSIVEFSYNGEVRIPVENINNLLDAAHSLRIIGLMDIDGLDESDTGIQCKDLNQSGIESLAELNDMEDSVLRELEQEYEEDKIIITTSPVEPENNSILSPGKKRKRRRDSNKRDYSEEMLISAITDLRAGQTLIEAATKNNIPRSTLYMRAKTLGIHLNASRNEYPPECVKAAIDAVMSGSSLQQASENYRIPKTVLWRRIQKEGYQVFRADMKRTYCTEKREAAVKALARGENLTKVASEFQIPKTTLFRDKARLVDEGKLPLSFWKKRKTESEELKKCRLEEAVAACKDGQMSQATASLVYRVPKTTIWRRLQQEGKKYERPVISRRQPKPLILPVKENKIEEGEFETYCEVPTEIPITYIDGSTIPEDSVIILTTEDVDALNLEEGRQIVVNSDAGSEFISCNISLEDGTEFCPSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01488821;
- 90% Identity
- iTF_01488821;
- 80% Identity
- iTF_01488821;