Basic Information

Insect: Trichoplusia ni
Gene Symbol: stc
Assembly: GCA_003590095.1
Location: NC:15698645-15712430[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2 1.5e+04 -4.4 1.6 15 19 515 519 514 519 0.81

2 14 0.041 3e+02 1.3 1.2 2 10 547 555 547 555 0.93

3 14 3.8e-05 0.28 11.0 18.1 4 19 563 578 561 578 0.93

4 14 8e-08 0.0006 19.5 13.3 1 19 614 632 614 632 0.97

5 14 1.9 1.4e+04 -4.1 1.5 1 10 658 667 656 667 0.73

6 14 5.9e-05 0.44 10.4 12.3 1 18 673 690 673 691 0.98

7 14 1.8e-05 0.14 12.0 12.7 1 19 732 754 732 754 0.87

8 14 2 1.5e+04 -5.3 2.2 6 10 784 788 784 788 0.94

9 14 0.0034 25 4.7 7.4 1 11 794 804 794 805 0.95

10 14 0.044 3.3e+02 1.2 0.3 4 10 809 815 808 816 0.93

11 14 6.3e-06 0.046 13.5 15.0 3 19 823 839 821 839 0.92

12 14 0.0014 10 6.0 10.6 9 18 885 894 879 895 0.92

13 14 4.6e-08 0.00034 20.3 14.0 1 17 931 949 931 955 0.85

14 14 0.0016 12 5.8 7.4 1 14 961 973 961 987 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2	1.5e+04	-4.4	1.6	15	19	515	519	514	519	0.81
2	14	0.041	3e+02	1.3	1.2	2	10	547	555	547	555	0.93
3	14	3.8e-05	0.28	11.0	18.1	4	19	563	578	561	578	0.93
4	14	8e-08	0.0006	19.5	13.3	1	19	614	632	614	632	0.97
5	14	1.9	1.4e+04	-4.1	1.5	1	10	658	667	656	667	0.73
6	14	5.9e-05	0.44	10.4	12.3	1	18	673	690	673	691	0.98
7	14	1.8e-05	0.14	12.0	12.7	1	19	732	754	732	754	0.87
8	14	2	1.5e+04	-5.3	2.2	6	10	784	788	784	788	0.94
9	14	0.0034	25	4.7	7.4	1	11	794	804	794	805	0.95
10	14	0.044	3.3e+02	1.2	0.3	4	10	809	815	808	816	0.93
11	14	6.3e-06	0.046	13.5	15.0	3	19	823	839	821	839	0.92
12	14	0.0014	10	6.0	10.6	9	18	885	894	879	895	0.92
13	14	4.6e-08	0.00034	20.3	14.0	1	17	931	949	931	955	0.85
14	14	0.0016	12	5.8	7.4	1	14	961	973	961	987	0.89

Sequence Information

Coding Sequence: ATGTCTCAGTGGAACAATTCATACGCTTACGATAACCAGTACCAATCCTGGAATGGTGATCCCAATTGTCAATATGCTAACCAGACCTATTATCCTAACAGAGCAGAGCCAGCTAATCAATATGTGAGCTTTAATGAGTTTTTATCTCAAATGCAAAACAATGGTGCGCCGAATTCTGCTAACTATAGTAATGTACAATACGAAGCTTATCAAAATAGGCATTACAACTACCAGAACTTACCACCCAACGCTCAAAACCCTCAATTAGACAGTTATGGATATGCAGCCTCATCAAATGCCCCCAATGGTGCTGAAGCATACCAAATGAATGTCCAAAGTCAGTACGCTCCAGTGGCTCCCAATACCAATGCTTACACAAATGCAATGATACTCAAATCCAACTTAACTCCTACTGCCACTGAGTTTGTGCCAAAATGTTCTATGATGAATCCTTCAACTAGCACTCAGAACATTCCTGAGACCAGTACTGTGAATGAGGATAGtgaatttagaaataattatgttaatgtaaATGACTCAAGAAATCACCATTCAAATGTAAGTGATTCACGAAATAACTATGTCAACACCAGTGAATCTCGTACCAATGCTAGCAGTAAATCTGATACAAACTGGAGAGAACGTCCTCAAAGTTCCCAGCAAAGCAATGAACAGAACCCAAGAACAGAATCATTTCAGCGTCCACAAGAGGTAACGAGAAGCCATGAGCCTAATAGTCGTCGTAATCGCGATAATAACTATCGCGATTATGAATCAAAATCTAGACACGAATTAACCGGTCGTAATTATGAATCGAATGGGCGCCACGACTATAACAACCGAAATTATGACTCAAATGGGCGCCATGAGTCTAACAGTCGCAGCTATGAATCTAATAGTCGATACGAATCTAGCAACCATAGTCAAGAATCAGATGTTCGTCAAAATGAACCCAGTGGTCGCAGCCGTGAACCAAACGACTCAAATAGTCGCAACTACGAATCAAATAACCGCAGCTATGAAACAAGCAACAAAAGAGGTCAatcaaagcaaaattataagTCGAAAAACAATGATGATGCTCGTACTTTTTACAACAGTTCCATAAGTAAGGATAGCCAGGATGTGAGAAATGGGAGGGGTGAAGGGTCTGGCCGCGGAAAGAACTGGATAGGAAGCCAGCGTGTCAGGGCGACAGAACGGAACTGCACAGAAGATGAGCAATATGCAAACACCTACTTAAAGGAGGAAAGAATGGAAAGCagagaaagagagagagaaaaaGTGACTAGAGTGGAACCCATTCAAAGCCCAGCTCGCTCAAAAAGTAAACATCAGAATAATGATCAAGcaAATAAAGAGATGACTCAACGGGAGCGCCTTGCAGAGCAGTTAGATAAAGGAACGCTGGAGTGTCTGGTGTGCTGCGACAGAGTCAAGCAGTTTGATCAAGTGTGGTCCTGCACCAACTGCTACCATGTACTGCATCTCAGGTGCATTAGAAAATGGGCCATGAGTAGTATGGTCGAGGGCAAGTGGCGCTGCCCGGCCTGTCAGAACACGAGCGAGCTGATCCCGGGCGAGTACCGCTGCATGTGCGGCGCCGTGCGCGCGCCCGAGTAcgtgcgcggcgcggcgggcgcgcacACGTGCGGCCGCGCctgccgccgcgcgcgcgcctgcCCGCACCCCTGCACGCTGCTGTGCCATCCCGGGCCCTGCCCGCCCTGCCAGGCCACCGTCGTCAAACAATGCGGCTGCGGTGCGGAGACCCGCTCGGTGTTATGCAGCAGCAAGCTGCCGCAAGTTTGCGGCCGAGTGTGTGGCCGCACGCTGCAGTGCGGTGTGCACAAGTGCAAGAGCGACTGCCACGAGGGACCCTGTGATGAATGCACCGAGGTTGTCACACAAGTGTGCTACTGCCCGGCGGCCAAGTCCCGCTCGGTGGTGTGCACGGCGGAGTCGGGGTCGTGCGGCAGCTGGTCGTGCGGCGACACGTGCGGCCGCGTGCTGGCGTGCGGCGCGCACGTCTGCCGCGCGCCCTGCCACGCGCCGCCCTGCCGGCCCTGCGCGCTGCTGCCGCAACACGTGCCCACCTGCCCCTGCGGGAACACGCAACTTCCAAAAGACTCGCGCAAGTCTTGTACCGACCCGATCCCACTGTGCGGTAACATTTGTGCCAAACCGCTGCAGTGCGGGCCCGCTGGAGACAAGCACTTCTGCAAACTTAATTGTCATGAAgGTCCATGCCCCGAATGTCCCGATAAAACTGTGCTCCAATGTCGCTGCGGTCACTCTAGTCGTGAGGTACCGTGCGCCGAACTGCCCGAAATGTACAACAATGTGCTGTGCCAGAAGAAGTGTAATAAGAAGTTATCATGCGGTCGCCACCGCTGCCGCACAGTATGCTGCGCGGCGACCTCGCACCGCTGCGCCGTGGTGTGCGGCCGCACGCTGTCCTGCCAGACGCACCGCTGCGAGGAGTTCTGCCACACCGGACACTGCGCGCCCTGCCCGCGCGTCAGCTTCGAGGAGCTGTCGTGCTCGTGCGGCGCGCAGACGCTGCTGCCGCCGGTGCGCTgcggcgcgcgcccgcccgccTGCAGCGCGCCGTgcggccgcgcgcgcgcctGCCGCCACCCGCCGCACCACTCCTGCCACGCGGGGGACTGCCCGCCCTGCGTCGTGCTCACCACCAAGCGCTGCCACGGGAACCACGAGGAACGAAAAACGATACCGTGTTCCCAAGAAGAGTTCTCTTGTGGTTTGCCTTGCGGGAAGCCACTGCCGTGTGGCAAGCACACCTGCATCAAGACGTGTCATAAGGGTCCTTGTGATACTGGCAAATGCACCCAGCCGTGCATGGTCCCGCGCCCCAGCTGCGGGCACCCGTGCGCGGCGGCGTGCcacgcgggcgcggcgggcgcgggcgcggcctgcCCCAGCGCCGCGCCCTGCCGCCGCGCCGTGCGGGCCACCTGCCCCTGCGCGCGCCGCCACGCGCAGCGGCCCTGCTGCGACAACGCACGCGACTATGCCAAGATGATGAGTGCCCTCGCAGCTACTAAGATGTCCGAAGGTGGTTCAGTAGATCTCTCAGACGTACAGCGTCCAGGAAATATGCTTAAAACCCTGGAGTGCGACGACGAGTGTCGCGTGGAGGCCCGCACGCGGCAGCTGGCGCTGGCGCTGCAGATCCGCAACCCCGACGTGTCGGCCAAGCTGGCGCCGCGCTACAGCGAGCACGTGCGGGCCACGGCCACGCGCGAGCCCGCCTTCGCGCAGCAGATACACGACAAGCTCACCGAGCTCGTGCAGCTCGCTAAGAAgTCAAAACAGAAGACGCGCGCTCATTCATTCCCATCGATGAACTGGCAGAAGCGTCAGTTTATTCACGAGCTGTGTGAACACTTCGGCTGCGAGAGCGTCGCTTACGATGCTGAGCCCAACAGGAACGTTGTGGCTACTGCTGACAAGGAAAAGTCGTGGCTGCCGGCCATGAGCGTGCTGGAGGTGCTGGCGCGCGAGGCGGGCAAGCGCCGCGTGCCCGGGCCCGTgctgcgcgcgccgcccgcgcccgccgccgagCGCGCGCCCAaggccgccagcgccgcgcccgcgcacaAACAAGCAAGTGGCTGGGCAACATTGACATCAACAAACGCGTGGGCGGCCCGCAGTCAACCGAAGCCGCAACCAGCTCAGCCAGCGGCGCAACCGCAACCGCAACCGCAACCAGAGAAGATCGACTACTTCGACAACCCGCCCGAGAACTAG
Protein Sequence: MSQWNNSYAYDNQYQSWNGDPNCQYANQTYYPNRAEPANQYVSFNEFLSQMQNNGAPNSANYSNVQYEAYQNRHYNYQNLPPNAQNPQLDSYGYAASSNAPNGAEAYQMNVQSQYAPVAPNTNAYTNAMILKSNLTPTATEFVPKCSMMNPSTSTQNIPETSTVNEDSEFRNNYVNVNDSRNHHSNVSDSRNNYVNTSESRTNASSKSDTNWRERPQSSQQSNEQNPRTESFQRPQEVTRSHEPNSRRNRDNNYRDYESKSRHELTGRNYESNGRHDYNNRNYDSNGRHESNSRSYESNSRYESSNHSQESDVRQNEPSGRSREPNDSNSRNYESNNRSYETSNKRGQSKQNYKSKNNDDARTFYNSSISKDSQDVRNGRGEGSGRGKNWIGSQRVRATERNCTEDEQYANTYLKEERMESREREREKVTRVEPIQSPARSKSKHQNNDQANKEMTQRERLAEQLDKGTLECLVCCDRVKQFDQVWSCTNCYHVLHLRCIRKWAMSSMVEGKWRCPACQNTSELIPGEYRCMCGAVRAPEYVRGAAGAHTCGRACRRARACPHPCTLLCHPGPCPPCQATVVKQCGCGAETRSVLCSSKLPQVCGRVCGRTLQCGVHKCKSDCHEGPCDECTEVVTQVCYCPAAKSRSVVCTAESGSCGSWSCGDTCGRVLACGAHVCRAPCHAPPCRPCALLPQHVPTCPCGNTQLPKDSRKSCTDPIPLCGNICAKPLQCGPAGDKHFCKLNCHEGPCPECPDKTVLQCRCGHSSREVPCAELPEMYNNVLCQKKCNKKLSCGRHRCRTVCCAATSHRCAVVCGRTLSCQTHRCEEFCHTGHCAPCPRVSFEELSCSCGAQTLLPPVRCGARPPACSAPCGRARACRHPPHHSCHAGDCPPCVVLTTKRCHGNHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTGKCTQPCMVPRPSCGHPCAAACHAGAAGAGAACPSAAPCRRAVRATCPCARRHAQRPCCDNARDYAKMMSALAATKMSEGGSVDLSDVQRPGNMLKTLECDDECRVEARTRQLALALQIRNPDVSAKLAPRYSEHVRATATREPAFAQQIHDKLTELVQLAKKSKQKTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRRVPGPVLRAPPAPAAERAPKAASAAPAHKQASGWATLTSTNAWAARSQPKPQPAQPAAQPQPQPQPEKIDYFDNPPEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00001680;
90% Identity: -
80% Identity: -