Tni010419.1
Basic Information
- Insect
- Trichoplusia ni
- Gene Symbol
- -
- Assembly
- GCA_003590095.1
- Location
- NC:1222414-1232728[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.1 1.6e+02 2.8 0.1 3 23 111 131 109 131 0.95 2 17 0.011 0.57 10.5 0.1 2 23 135 157 134 157 0.96 3 17 0.071 3.6 8.0 2.1 3 23 389 410 387 410 0.95 4 17 0.027 1.4 9.3 0.1 1 20 418 437 418 438 0.95 5 17 0.02 1 9.7 0.3 1 23 448 470 448 470 0.95 6 17 0.0014 0.07 13.4 1.7 1 23 518 541 518 541 0.96 7 17 0.14 7.1 7.1 0.1 2 23 618 640 617 640 0.85 8 17 2.8 1.4e+02 3.0 1.8 1 23 645 668 645 668 0.95 9 17 5.7e-05 0.0029 17.7 1.9 1 23 674 696 674 696 0.96 10 17 4.8e-05 0.0024 18.0 1.3 1 23 703 725 703 725 0.98 11 17 0.00014 0.0072 16.5 2.3 1 23 1522 1544 1522 1544 0.96 12 17 0.0004 0.021 15.0 2.2 1 23 1550 1572 1550 1572 0.98 13 17 7.9e-07 4.1e-05 23.6 1.9 1 23 1578 1600 1578 1600 0.98 14 17 0.0012 0.061 13.6 1.8 2 23 1607 1628 1607 1628 0.97 15 17 0.00037 0.019 15.2 0.5 2 23 1636 1658 1635 1658 0.97 16 17 0.00034 0.018 15.3 0.3 1 23 1663 1685 1663 1685 0.98 17 17 0.0078 0.4 11.0 2.2 2 23 1692 1714 1691 1714 0.96
Sequence Information
- Coding Sequence
- atgtctTCGGACGATTCAGATGATGAACCGCTATCAGTAATAGCGGCGAATAAGAAATTGAATCCTGATCTCGACATAATACCATCAGACGGTTCAGCGCGTCCATCAAAGAAGAGAAAGAAGACAGTACCGCCGAAGCGTCTTTCTATaactataaagtttaataaaactggACCTCAGCAACCAGTGATAGAACGGCCTTCCGACGTGTGGCTGTATTTGAAGGATCTTAATCCATCAGGACCATACAACTGCCTGCTCTGCTCTGAATGGTTTATTAACAGATCAAAAATGATTATGCACTACGTCTTAAACCACAAGAAAGATTTCTGTGGTATTTGCAGGTATTTTGTAGCTGACAGAGAGGCTTGGTGGAATCATGTGAAGTTCCACACACCCTGGCCTTGTTCCCAATGTGTTGAGAACTTTGAAACTGAAGTTGGCTTACGCAACCACCTTAGAAGTGTTCACAACCTGGTACACTGCAGACTCTGTCATTTTCGCGTGCTTAATGGTGATCCATACAACACTCATTTATTCCAAAAGCACAATGTCAgtaatgtttcaaataaagatGAGGATACTCTATGGGAACTGGAATACGATGGTACTTccaatttcatttgtttgttatgCTCTAAGACAAATAACTCTGTAAGAACATTCTTTAACCATTACATGGGCTATCACCACTTTACTCTCAAATGTTTTACTGCCCTGCTAGCTGGCAGAGACGCCCCATTCTCAGTGTGTGGGGCTGACTTAAGGTCTGAGTTTGTTGCGGAGCAATTGAAGAACCATACAAGGTATGGGTATGTTGACTCTGACTTCAAACCACCTGAAATGGGCGGAGAATCATGTGATACAAAAGACTTGCTTAAAGTTCTTATACCTGAAATTAAGCAGGAAATGTTTACTGCTGATGAGAATAAGAATGATGAGGCTGCAGGGCCACAGGCAagggatgatgacgatgatgatgtttATAAGACTTACAATGGTGATGATGACTTTGATGTCACTCTCACAGAAATTCTAGTCATTCATAAGTGTTACAAGGACTACATAGGTGACATATTATGTGATATAAACTCCAACTGTGTTTATGAATACTCTGATATAGATTATGGGAAGGCTATAATGGATCCCACAGTCAACATAGATTGCGGTTTATGTAAAACTCACTACAGTAGCTTATCAAGTTTTTTAACTCACATGTTCAAAATGCACTGTGTCAAATCTGCCCCATTGTTTTCATGCAGAGTGTGTGCGACTACATTTGATACACAGGGTGAGCTCGAAAGCCATGTTTCTGATGAGTTGGGGGACTTTGAGGATCTCTTTATCTGTCAGTTTTGTGATGAAGAGTTTCCCGACAGAGAGGCAACCAGACGACACCTGACTGATCATTGGGATTTGATAGAATATGACAATTGTTTTAGTCCACACTTAGGTTTCAAATGCAGCTTCTGTCCAACACTGTTTTGGCATGAAACTGATAGAGAAACTCATCAGGTTCGAGCACATTTCTTTAACCACAAAGAGCATTTCTTCAAATGTGAAACCTGTAAAGAAATATTCAGTGATAAGGTCTGGTTCATCCACCACTACTTAGTAACCCACAGTATTGCGGGGAAGATTCCTCTCTACCTCCTCAAGTGCTCCCTCTGCTGCCTGGTCCTGCCTGATATAGAGAAGATGAGAGAACACTTTAACTGTGAGCATCCTGAAGCCAGGAAAGTCTACTGTTCCTTGGATGCCTGTAAATACAAGCCTCTAAGTCACAGAAAGTCTTTTAAGCTGCATGTTCGGACCATCCACACGGCGAAGCCCCGTCCGGAGCGCGCGGTGGAGTGCCAGGTGTGCGGGCGCGAGTTCAGCAGCGCGCGCGCCTGCGGGGCCCACATGGCGCAGGCGCACGGGCCCGGCAAGTTCAAGTGCAAGCTCTGCAGGGAGGTGCTGCATACTCTCGACGAGAGGAAGCTACACTACCTGATCAGCCACCCGGGCCAGCACCCGTTCGAGTGCAACGAGTGCGGCAAATCCTTCCAGTACAAGTCGTCGCTGTACATGCACAAACAGGACCACCTGCCCAACAAGCAGAACTACACCTGTACTTACTGCGGGAAAAtatttatgAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCATACTCCTCATGATACGCCCCGCCCCACAGAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGCCACGCGTGCTCGTACTGCCCGATGCGCTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGCCGCCACACGGGCGAGCGGCCCTACGCCTGCCCGCACTGCCCCAGGAGCTTCGCCGACAAGGGCGCCTGCACTTCGCATACTAGGACCCATTCCAAAGACACATCTTACGCGTGCATGTATTGCGGCAAGACATTCGTACAGAAGTCTAAATTGACGTACCACATCAGGAAACATACAGGAGAGAATCTGGAGACTTGCGGCGTATGTTCGAAACTGTTTACAAGCGCTTGCTCGTTACGAGAACACATGAAGATACACCAACGTAAAAAGGAACTTGTTAAGTGCCCTCTATGTGATCGTAAGTACGCGGACGAGCGCTACATGCTCCGCCACCTCCGTACGACGCACACGCACGAGCGCTTCCCCTGCCCCATCTGCAAGAAGCTGCTCACCAGCGCCTCGGGGCTCAGGCATCACGTCATCACGCATAGCACGCTTAAAACGCTCAGGTGTAAAATGTGTCCAAAAGAATACTCAGTCAAAAGGACGATGATTAAACACTTCCGTCGTCGACATGGCTTCAAGGGCACAGAGCCAAACATCAAAGAATACTTTACCAGACTGGACCCCAGAGACTGTAACCTGGATCTCGACGAAGAAACTATGACCACAATCTTCGGACCAGCGAAGAACAGATCAGAAGAAATACTAGTAGGAGACTTCGTTACACTTACAAATATAGAAGAAAATAAGGAATTAGAAGTGGAAGTCGAAGTAGAAAGAAATGAAACTCTAGAAGAAGAAAAGTCACAAACAGATGATGAGAAATCTACAGAGAGTGAGCCTGTCATGGCAAACGATGACGGGAAGATTGTTATTAAAGTTGAACCAGCGGAACCGCCGCCCGAACCAGCAGAGTTAGAACCGACTGACTTCGTTAGCGTTAAGATTGAGTCCATGGATGAGGAGAACTAG
- Protein Sequence
- MSSDDSDDEPLSVIAANKKLNPDLDIIPSDGSARPSKKRKKTVPPKRLSITIKFNKTGPQQPVIERPSDVWLYLKDLNPSGPYNCLLCSEWFINRSKMIMHYVLNHKKDFCGICRYFVADREAWWNHVKFHTPWPCSQCVENFETEVGLRNHLRSVHNLVHCRLCHFRVLNGDPYNTHLFQKHNVSNVSNKDEDTLWELEYDGTSNFICLLCSKTNNSVRTFFNHYMGYHHFTLKCFTALLAGRDAPFSVCGADLRSEFVAEQLKNHTRYGYVDSDFKPPEMGGESCDTKDLLKVLIPEIKQEMFTADENKNDEAAGPQARDDDDDDVYKTYNGDDDFDVTLTEILVIHKCYKDYIGDILCDINSNCVYEYSDIDYGKAIMDPTVNIDCGLCKTHYSSLSSFLTHMFKMHCVKSAPLFSCRVCATTFDTQGELESHVSDELGDFEDLFICQFCDEEFPDREATRRHLTDHWDLIEYDNCFSPHLGFKCSFCPTLFWHETDRETHQVRAHFFNHKEHFFKCETCKEIFSDKVWFIHHYLVTHSIAGKIPLYLLKCSLCCLVLPDIEKMREHFNCEHPEARKVYCSLDACKYKPLSHRKSFKLHVRTIHTAKPRPERAVECQVCGREFSSARACGAHMAQAHGPGKFKCKLCREVLHTLDERKLHYLISHPGQHPFECNECGKSFQYKSSLYMHKQDHLPNKQNYTCTYCGKIFMKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFILLMIRPAPQKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRSFADKGACTSHTRTHSKDTSYACMYCGKTFVQKSKLTYHIRKHTGENLETCGVCSKLFTSACSLREHMKIHQRKKELVKCPLCDRKYADERYMLRHLRTTHTHERFPCPICKKLLTSASGLRHHVITHSTLKTLRCKMCPKEYSVKRTMIKHFRRRHGFKGTEPNIKEYFTRLDPRDCNLDLDEETMTTIFGPAKNRSEEILVGDFVTLTNIEENKELEVEVEVERNETLEEEKSQTDDEKSTESEPVMANDDGKIVIKVEPAEPPPEPAELEPTDFVSVKIESMDEEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -