Tni009763.1
Basic Information
- Insect
- Trichoplusia ni
- Gene Symbol
- -
- Assembly
- GCA_003590095.1
- Location
- NC:10271077-10285839[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.55 28 5.2 0.2 2 21 1728 1747 1727 1748 0.88 2 7 4.1e-05 0.0021 18.2 0.9 2 23 1857 1878 1856 1878 0.95 3 7 0.0021 0.11 12.8 4.6 1 23 1898 1920 1898 1920 0.98 4 7 0.0047 0.24 11.7 4.2 1 23 1963 1985 1963 1985 0.98 5 7 0.038 2 8.8 4.1 1 23 2008 2030 2008 2030 0.94 6 7 0.00045 0.023 14.9 2.1 1 20 2054 2073 2054 2075 0.94 7 7 0.52 27 5.2 0.8 5 23 2436 2455 2433 2455 0.90
Sequence Information
- Coding Sequence
- ATGGATAGGTTGAGCCACTTGCGGGGTGAAGCGGGGAGCTCGCGGGACTCCACGCTCGACACCACGTCCCCGCCGAGCGAGTCCTTCATGACGGCCAACGAGAGCAACTCCAAGTACTACTCTCTGTCAGAAGTCGACTCAACATTCGACATTTCATCCATAAAGGATGTTTCAATGGGCAGCGCGACCACAGGCTCTGACGAGACTATAACGAACACCGATGAGTTGATCTCAAACCTGTCGCCTATTGGCAAGAAGAGTGACATATTAGATAGCTACAAAATTGGTAAACAGATAGAGGCTGCAAACATTCTCTCTGGAGGTGTTGACATCTTTGATGACAATGACAACTCATATGATGGCGACGAGCTGGTGATTGATGATGCTGTGGATGTGGATGATAAGTCTAACTCGGAGCTGAAGCAGGTGGAGAGCATGCAGTACAAGTCTGATGAGAATGAGTCGACCCTGATGAATGAGGATGTTGATATTGCTAGTAAGGATACTGAAGTGGTGCTACAAATTGATGGTAAAAACGTAGATGCTATTGATATTGGTAACGGACTCTACTTGTATAGGAAGGAAGGACAGGAAGAGTTGGCCGCTGTTCAGATCATTGATGATGATCAACAGCAACCAAGTTTTAAGTTCCTTAAAGTTCGtgAAAATGCCGAAGGTAATTTAGAAGTATATgaagaaatagaaatagaagTACCTAAAGAAGTGCCTGCAAAAGAAGGAAAGACTCCAGATAAGAAAATTTCATCACATGTGCCTATTAAGGATATCAATAAGGTGATTAGTGATACCTCTTGCAACAAAGTTGCTGAAAGGAAGAGAACACCAAGAAAAGAACCAAAAGCAACTGTTACTGAAGTTGAAACTGAAATAAGTAAGGAATTATCACCTGATAACAAATCTGAAGTGAACTTTAATGGGAAGATGATGAAATTTAATGAATCACGAAAATCTCCTGTCATAGGTAGCTTTACACCTATGACGTTTCATTCAACACCCAACAAAGAAGGTATACCATTAACTAAGACCATGGTAGACCAACAGTTGCACCCAAATCGGCAttcagataatattaaaaaaaccattGAGGTGCATACTGATAGTTGTAAGCAAAGACCAATTGATTCACTCTCTAAGTTCAAAGATGCtgatgacaataaaataaacgataTATCTAGTACTGAGAAAGAAATTGATTTAGATGAAACTAATGAAAAAGATATTAATATAGAAGAATCTATTGCAAAAGATGATATTGTTGAAGTAAATGATAAAAGGAATGAAGAAACAGCTGTATTTGAAGAAGCTGGTCAACTTATAATAGAGGAAGATAGTGATAGTCTAAGAATTATCCAGTCAGAATCAAATGAATCTGACAAAAAGGAAATTGTTGAAAAATGTGTTCCCAAAGATACATTAGTTGTTGCTGTTGAACAAGATAATGTAATTGATTCAACGGAAAGTAATTCTAATAAGAGTCCCTTAGTTTTACAAGATGTTCAAGCTGAAACTGTTgatgaaattaaagaaaatactgaaaatgaGAGTGCGGTTGTTGCAACTGAAAAGCCTGCCGAAAGTGTACTCAGTGAGAAAACagaaacaacaaatattgaatcTGAACCCGACAGTGGCAAAGCTGAAGTGGCTGCAGTTGAGACAGTCATAGTTGAGACTGAAACTGAACagcaaacaaaagaaaatgaagtTATCGAAATAATTGAAGATGACTCAAAGGATGCTATGGAAATAGACATTCAAGAAACTATTGAAGAGAAAGCCGAAAAGGTTGACGAAAGTGATAAAGAAAAGATTACAATTgtagacaaaacaaatgaaagtgaaCAAAAAGCCAAggtttgtgaaaaaataaatgaacctCAAAGTAAAGAGGCTGacgatattataattattgatgacAGTGTAGCAGAAGAGTCTGTTGTTGAGGAAAGCATTAAGCCTGAAACTCAAAAAATTGTTACTGAAATAACTGTTAGTGAAAGAAATGCTATGGAAAGTAGCACGAAAATAAATGTTGAGGAGAAAGgtaaagctaaagaaaaaattGTATCTAAAAACGCTGTGCCTCAAGAACCAGAAAGTGTTCAAGATAAAGATTTAAAACTAGAAGAATCAACAAAAAAGAATGACGTGAAAAATGAGAGTAAAGATACTGAACCAAAAGCAACACCAGAAacggaaaaagaaaaagttgtTGAAGTTGCTTCAGATAGCGTGAAAAATAGCCAATCTAAAATACCCGTTCCACAACCCACTAAGGATACAAATAAACCTACTGAAAGTGAACTTACATCTAAAACGGAATCCTCTAAACCAATGGAAAGTAGTGAAAAAGTCGACAAACCAAAAGATATTCCAAAAGAAACGGTTCAAGAAAAAATAGTCGAACCCGTTCAAAGTATTCCTTTGGATTTAGAAccaacattaaacaaaaagacTGAATCTCCAAAACATATTCCGATAGAGCTAATCAAACCGCAAGGGAAATTAAAAGCTAAGTCGAAAAATGTTGAAAAGTCAACTCTTATACCAACAAAGGCTGCTTTAGTAAAACCTTTAAAACAAGAAGTAATGAAAGAAAATGCACAGGACAAATGTAATAAGAAGGAACCCGAAAAGTCTACAAAAGTACTTGAGCCACCAAAAAGTGCAGTACCTACAAAGGTAGAAAGTATTGATGTGACTCAAGTTGCAAAAACAGATGATGTCGCCAAAGAACCAGCTGTGACCGAAAAGGAAAAAACAATAACTCAAGAAAAACCCGAGCCTGTTCCTAATGTAGTTGCTGACTCAACAGTTCATAAGGAAGAACAGAAAGACAACAGCTTGCCATCCACAAGTGCTGATAGTGAAACTGTAAAAAGTGAAGGagttgtaaataaatcatcTATTGAAGAGCCAATGCCTTGTAGCTCCTCCAAACCAGACGTCTGCAGTTCATCATCAGACGTTAAAGAAGATGCGAAACCAGACACAAGTGATAGAAGCGAGCCTGGGACATCAGGTGAGTCTAAGCCCAAAAACAATGCTGCTGTACCATTCGGAAAATGGACGGCGACCAATAGAAAAGAGTTCTTGGATAAAATTAAGACGAGAGTCCCACAACCAGCCCCACAGTCAACCAGTAATCAGCTGAAAAACTCCAACGATCTCAACAGAAGAGatgtattaaagaaaattgacAGCCAAAGGCAATCTAGTAACGCCCTATCAAAATCTCAGGAAGCCAACAAACAAAATGTGAAGAACGAAACTGCATTTGGAAAAACCAATTTAATCAATAAGGATAATAGTACTCAAGAAAGCAAAATACCCTTGAAGGTGGAAACTGAACCTGAGACAAATGCTGTAGTTGCTAAAACGACGGCGAAAAAGGAGGAAGCAGAACCGAGTAAAACTCAGAACGAGCCATCTCAAGCAGCTGTTACCACAAATGTGCCCAAAAAAGAAGCCTCAGAGAGAACTGAAGTCAATTACCAACATTTAATTGACAAAACTATTGAAGGCATGATACACAGAACCGTTGCACAAAAATCATCTTCCGATGAACCAAACCAAAACTCTACTAAAGATGAAAGTGCTCCTGAATCTGCTAAATACGCACTTAATTACGAACCAACAGACCAGGCGACTCTAGACGCCatagaaatgaaaatgaatgagtTACATGGAATTCCTTTTATAGAGAGACCTCCTCACGAATTGCCACAAGTCCCTATTACCGAGGTTAAACCTGTTACAAAAACAGATACTGAAAAGCAACCAGCTCCCGTAAAAGCTTCGAAAATACCGAATCTCTTAccattcacaaataaaaatcaacagtGGGTCATCAAAGGAAACGTTGTAGAAGTAGATTCAGAAGAAGAAATAATTGAACATGAACCTATCACAGGTGATAAAGACTTAACAAAGAAAACTACTGGACATAAGCATACTATAAAGGAGAAATTGTTAAATAGCGTAACGGCAGATGCTGCAAAGAAGGAGGCAATAATTACAGAAAACGAATTTGATAAATTCGCGAGAAGAAATTCTATCACTTATGAGAACTGCCTAACTGTTAACTTTGATGGTAAAGAAGCTCACAAGGTCATCCAAAATGTGGTTGAGAAGGACCCATATCCAAAAAGCTATTCAAGAAATGACATAGCCCGCAACGACCCTAAGTCACGGCTTACATACAAATACCAAAATATGCGTCAAAATACTGCTCCGGTTAAAGTTcatcaatcaaataaattcGGCACTGCTACAGAAGATTCGTCGAACAGGAACCACTCTAAGTTACAAAAAGCTTACCAATCAGCTTTGACGGCAAAACGACAAATGGAATGTCCTATTACCATCATTGAAGATAAACCAGTCAAAGTTGTTTTCATGGACAATATGGAGTTTGTTCCAAGTCAACTTAACGTTCAGGGTCAAGAACTGTCGCCCGCCAAGAAACGGGAAATAGAGGCTGATAATGTAACAGTCAGTACTGTTGATTCTTTGGAATTGGATGTCTTAGATAATACAGATGATAGTAAGTCCCAAGATGAAGTAAAAATCAAAACTAAGCATCAGAGAAAACAAGTGTTCACACCAGTCGATGAGCCTGAGCTAGAACTAATAGAACCAAAGGATTTAGGACTAGAGTCCTCGCctaagaagaaaaagaaatcagATGAAGATAAAACTGTTAAATACCCGATGCGTAAGAAATACTACTTACTCGGTTCTAATACACTAACGGAGGAAAAAGTTGTGAACACTGCAGAAGTCGTGAAAAACCCGCTCAAGGAAACTGTAAATCGAAACGATAATGGGGTTTCTCATAAAAATGCTGTCTCAGCTATCGATAGTTTGGTCAAAGCGGCTGAGCTTCTCGAACACCAATCAGAAAACTTCAACCTGAGTGATTCCCCTAATCCCGATAGTCAGAACAGCACCCCTGTAAAGAGAGGAAGGGGACGCCCAAGGAAATATCCTTTACCTGATGGCGGaatggaaaaacaaaagatCAGCCCAAGCCCTCAGAAGAAGCCTCGCCTGATAGACGCGAAACCTCCTCCACGAGACACTTCTACAGAAGACGAGAGTGACAGCGATGAAATCATTAAAGAAAACTGGACTATGGGCAAAATCAATGAAAACATTGTTTGTCCAATTTGCAGCAAACTATTTAGAACagaaaatgtagtttttaagCACGTGAAACATTGCACGGGACCGTCGCCGAACAGGTCTGATTCCGATAAAAGAAGTCCGAGGCGATCGCGACATTCGCAGGAGTCTGATTCTAAATCACGTGATGAAAGCCAGTCCGACGATATGGATGACGATGAGCCACTGATCGTCAGGAAAACAACCCCTAAGAAGCGAAAATCCAAAGATTCTGTCGTCAAGTCTGATGATAAAGACGATGTTATCATCATCGAGGACACGCCAGTCAAAGAGAAGCCAGAAAAGAAAGATAAAGAAGTTGACGAAAGAAAACATCACGAGTCTCGAAAACCTAAGCCCGActctaaacaaaacaatttagtttGTGAATTCTGTGGCAAAACATTCAGGCAGTTATCATACTTAGTCAAGCATAAACTACAGCACAAGAAAGAGGAAGTCAAGAAAATTGAGAAAGAACCTCCTATTAACCACAAGTCAGTGTATAGCTGTGAAGTGTGCAAGAAGCAATTCAGAAAGCTACACCATTTAGTTCAGCATCGGATTATACACAACCCGAGTTCGGTTCCTGCGAGAACATTACGCAAGAGCTCATCTGAACAGAACAATTATGAGAAGAAGGTTGAAAAAGATCCGTCGACGTCAGCTGCTAAACAAAACGATGATCCCAGTGCCGGGTTCCGTTGTGAACCGTGTGACAAGTCATTCAGAAAACTGCACCATTTAGTGGAACACAGGGAAACCCATGATGGTATAAACAGACAGAAAACTACGGTTGTAACACAAAACAGTGTCGAAAAGCCTGTTTTGTTGCACCACTGTGACATTTGCAAGAAAACGTTTAACaaattacaacttttaattGAACACAAAGAGCAGCATGTAGAGACCAGTTCTGAAAAGTCTGATGATAAGAGTGTTAAAAGTTCACTCTCGACCAAAGACATTATACATGAATGTCCACATTGTTACAAAGTTTTCCCAAATGAACACTCCCTAACTAAGCATACAACTGTCTGTCAAAGAAAGAAGAGACAGTCGAAACAAGATACGCCTGCTGAAAAACCAGAAGATGTAGAACCCATAACTGAGACCACCGCCCCGAAAACTGAAGAAAAAGTCGAAGACGATTTAGACTCATCAGTACTTGTGATTGATGAAACGAAAAATGTAGTTGAAAAACCTGTAGTTGTTAAGACAATAGAAATGCCACAAAAACAACCCGAAGCAGCTAAAGTAATACCTCAACCAATAGTCCCAAGAACGGAAAAAGTTAAGGAAATTGTACCAGTAAAAGTTGAAACTAAACCACCTCAGATCGTACCTGCGAAACGAGAGTTCGAAGAGACACAAAATACCAAAATCGAAGCTAAGTCGGAAGTaccagaaaaaattaaaaaagttgatGTTAAAGAAAATCCTAAAGTTATACCTGAAACTcctaaaaagaaaactgttctTAAAGAAAAGTCTACTGCTAGTGCCAGTAAGCGCAAGTCGCAGGTCGCGCAAGCCGCGGTGAAGCCTGCGCCTGCTCCCGCTCCGCCCGCTGAAGACGTCAAACCATCGATAGAATCGAGTGATGACGACGAAGTGCGGTACATGCTCAATCCTAACTTCAAAGTTGAGGATACAACAGAAGAAAAAGTGTTCATGAAAGTCAAAGCTAAAAAGCGCAGCTCCCTTCAGATAGAACGACCCAACTCCAAAGACTTAGTAAAACGAAGAACGTCGTTACAACACCCACCGAAAATACCGCGCCTCAAGCCGAAAGCAGTCGAAACGAACTCAGTTacggtaaaaaatattgtaaaagcaCAAAAGCTGGAGCCAATAGCATCAACGGATTCTGATGATAGTGAAACTGTAAAATACTCTTTCCCGAAAACTGTTCCTGAGAAAACAACGAAACCCGCACAAGACCGCACATCAAAAGAATTAGAACGTAAAACTCAAAAGAATTCAGTAGTCGATAAGAGAAAGTCTTTAAGTGCAATCGCCAAGAGGAAATCTTTGGGGAAAGCTGTCGTACCCAGGCACAAAGTCTCACCTGTAAAGCAAATCAAGAGAAGGACGTTGGAGGTGGAGCACCGCTGCGACTGCGGGCAGTTGTTCAGCAGCGCGGCGCTGCTGTCGCGCCACACGACGCTGGCGCACACGCCGCCGCGGatccgccgccgccgctcgccGCCGCCCGACGACAAGCCCGCTGCCAAATCACTCCCGCGCAAATCTTGTCGCAGAAAAACCTAG
- Protein Sequence
- MDRLSHLRGEAGSSRDSTLDTTSPPSESFMTANESNSKYYSLSEVDSTFDISSIKDVSMGSATTGSDETITNTDELISNLSPIGKKSDILDSYKIGKQIEAANILSGGVDIFDDNDNSYDGDELVIDDAVDVDDKSNSELKQVESMQYKSDENESTLMNEDVDIASKDTEVVLQIDGKNVDAIDIGNGLYLYRKEGQEELAAVQIIDDDQQQPSFKFLKVRENAEGNLEVYEEIEIEVPKEVPAKEGKTPDKKISSHVPIKDINKVISDTSCNKVAERKRTPRKEPKATVTEVETEISKELSPDNKSEVNFNGKMMKFNESRKSPVIGSFTPMTFHSTPNKEGIPLTKTMVDQQLHPNRHSDNIKKTIEVHTDSCKQRPIDSLSKFKDADDNKINDISSTEKEIDLDETNEKDINIEESIAKDDIVEVNDKRNEETAVFEEAGQLIIEEDSDSLRIIQSESNESDKKEIVEKCVPKDTLVVAVEQDNVIDSTESNSNKSPLVLQDVQAETVDEIKENTENESAVVATEKPAESVLSEKTETTNIESEPDSGKAEVAAVETVIVETETEQQTKENEVIEIIEDDSKDAMEIDIQETIEEKAEKVDESDKEKITIVDKTNESEQKAKVCEKINEPQSKEADDIIIIDDSVAEESVVEESIKPETQKIVTEITVSERNAMESSTKINVEEKGKAKEKIVSKNAVPQEPESVQDKDLKLEESTKKNDVKNESKDTEPKATPETEKEKVVEVASDSVKNSQSKIPVPQPTKDTNKPTESELTSKTESSKPMESSEKVDKPKDIPKETVQEKIVEPVQSIPLDLEPTLNKKTESPKHIPIELIKPQGKLKAKSKNVEKSTLIPTKAALVKPLKQEVMKENAQDKCNKKEPEKSTKVLEPPKSAVPTKVESIDVTQVAKTDDVAKEPAVTEKEKTITQEKPEPVPNVVADSTVHKEEQKDNSLPSTSADSETVKSEGVVNKSSIEEPMPCSSSKPDVCSSSSDVKEDAKPDTSDRSEPGTSGESKPKNNAAVPFGKWTATNRKEFLDKIKTRVPQPAPQSTSNQLKNSNDLNRRDVLKKIDSQRQSSNALSKSQEANKQNVKNETAFGKTNLINKDNSTQESKIPLKVETEPETNAVVAKTTAKKEEAEPSKTQNEPSQAAVTTNVPKKEASERTEVNYQHLIDKTIEGMIHRTVAQKSSSDEPNQNSTKDESAPESAKYALNYEPTDQATLDAIEMKMNELHGIPFIERPPHELPQVPITEVKPVTKTDTEKQPAPVKASKIPNLLPFTNKNQQWVIKGNVVEVDSEEEIIEHEPITGDKDLTKKTTGHKHTIKEKLLNSVTADAAKKEAIITENEFDKFARRNSITYENCLTVNFDGKEAHKVIQNVVEKDPYPKSYSRNDIARNDPKSRLTYKYQNMRQNTAPVKVHQSNKFGTATEDSSNRNHSKLQKAYQSALTAKRQMECPITIIEDKPVKVVFMDNMEFVPSQLNVQGQELSPAKKREIEADNVTVSTVDSLELDVLDNTDDSKSQDEVKIKTKHQRKQVFTPVDEPELELIEPKDLGLESSPKKKKKSDEDKTVKYPMRKKYYLLGSNTLTEEKVVNTAEVVKNPLKETVNRNDNGVSHKNAVSAIDSLVKAAELLEHQSENFNLSDSPNPDSQNSTPVKRGRGRPRKYPLPDGGMEKQKISPSPQKKPRLIDAKPPPRDTSTEDESDSDEIIKENWTMGKINENIVCPICSKLFRTENVVFKHVKHCTGPSPNRSDSDKRSPRRSRHSQESDSKSRDESQSDDMDDDEPLIVRKTTPKKRKSKDSVVKSDDKDDVIIIEDTPVKEKPEKKDKEVDERKHHESRKPKPDSKQNNLVCEFCGKTFRQLSYLVKHKLQHKKEEVKKIEKEPPINHKSVYSCEVCKKQFRKLHHLVQHRIIHNPSSVPARTLRKSSSEQNNYEKKVEKDPSTSAAKQNDDPSAGFRCEPCDKSFRKLHHLVEHRETHDGINRQKTTVVTQNSVEKPVLLHHCDICKKTFNKLQLLIEHKEQHVETSSEKSDDKSVKSSLSTKDIIHECPHCYKVFPNEHSLTKHTTVCQRKKRQSKQDTPAEKPEDVEPITETTAPKTEEKVEDDLDSSVLVIDETKNVVEKPVVVKTIEMPQKQPEAAKVIPQPIVPRTEKVKEIVPVKVETKPPQIVPAKREFEETQNTKIEAKSEVPEKIKKVDVKENPKVIPETPKKKTVLKEKSTASASKRKSQVAQAAVKPAPAPAPPAEDVKPSIESSDDDEVRYMLNPNFKVEDTTEEKVFMKVKAKKRSSLQIERPNSKDLVKRRTSLQHPPKIPRLKPKAVETNSVTVKNIVKAQKLEPIASTDSDDSETVKYSFPKTVPEKTTKPAQDRTSKELERKTQKNSVVDKRKSLSAIAKRKSLGKAVVPRHKVSPVKQIKRRTLEVEHRCDCGQLFSSAALLSRHTTLAHTPPRIRRRRSPPPDDKPAAKSLPRKSCRRKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327464;
- 90% Identity
- -
- 80% Identity
- -