Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 1.2 62 4.1 0.7 2 23 176 196 175 196 0.89

2 6 5.9e-06 0.0003 20.8 5.4 1 23 203 225 203 225 0.98

3 6 0.0015 0.076 13.2 2.9 2 23 232 253 231 253 0.97

4 6 0.00025 0.013 15.7 1.2 1 23 259 281 259 281 0.97

5 6 0.00098 0.05 13.8 2.2 1 23 286 309 286 309 0.90

6 6 0.00013 0.0067 16.6 1.4 1 23 315 338 315 338 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	1.2	62	4.1	0.7	2	23	176	196	175	196	0.89
2	6	5.9e-06	0.0003	20.8	5.4	1	23	203	225	203	225	0.98
3	6	0.0015	0.076	13.2	2.9	2	23	232	253	231	253	0.97
4	6	0.00025	0.013	15.7	1.2	1	23	259	281	259	281	0.97
5	6	0.00098	0.05	13.8	2.2	1	23	286	309	286	309	0.90
6	6	0.00013	0.0067	16.6	1.4	1	23	315	338	315	338	0.92

Coding Sequence: ATGGTTTCCTCATAtgttatactaaaattattcaacaaaGCTACGTCCGACAGACGGCAAAATAATCGCGAGAGAAATGAAACACTCAGCGGAAGTTTATCTATAACGACTCAACGagaaaacaatacaaacaaatgtaGAATTTGTTTAAAGGAAGGCACCGTTCCTATTTATAATGACCTGGGCGATGTAATGGCTGTAGATATCAGTACTTTTGGTGGTATAGACTTAAGTGAGGATGATGAATCCCTTCACTTCATGTGTGATCCGTGCAGTAAATTACTTGAAGCGGCAATTCTATTTCGAAAAACCGCAAAAAAAACGGatcaaatattgaaaaacatagCGGCAAAAAACACAAAGCTTTCCATTGAATCTAAAGGATCGTCAACACAAGAAAAAGTTGAAGACAATTCTGAATCATCTACATTAGTCATACAAAGTTACTTCTCGTCTGTTGCCAGTAACATCGGTGACGCTGAGGAATCTCTAACTGTTAAACCAATTAAAAAGATACCTAAAGTGCAATGTAGAGTCTGCTTTAAAGTGATTACAAAATCCTACTACAAAGAGCATTTTGCTCTCCATGATCATACTGCAGCTAAATACGTATGCGACATCTGTGGGAAATCCTTTCGCCAGCGCTGTTCATATAGGAAACACTACTTCACACACAGTTCAGAATTCCCTTGGAAATGTAAGCTATGCCCCTACAGGGGTCGCCATTCAGGTCTACTGAAAACTCACATGCATGTACACACAGGGGATTATAGATTCATGTGTACTGAATGCCCAGCTAGATTTCtaacaaaaagtaatttgaaCAAGCATTCTTTAAAACACAAAGAACCATTATTCAAATGTGATACTTGTCAGCGAGGCTTCCACTCTAAGCTTAATTTGGAAAGACACTTTGAAGCAGACCATTTGggaataaaaaatcacatttgtcATGTTTGTGGAAAGGCATTTGGGTATAGAAAGGCTATGATGAGACATCAGTTAGATGTTCACAAGAGAGAAAAGAAAGTTAATGGTAGAACACCAGCTTATATTGAGGCAGAGTTAAAGAATTTGGATTCTTTTTTATGA
Protein Sequence: MVSSYVILKLFNKATSDRRQNNRERNETLSGSLSITTQRENNTNKCRICLKEGTVPIYNDLGDVMAVDISTFGGIDLSEDDESLHFMCDPCSKLLEAAILFRKTAKKTDQILKNIAAKNTKLSIESKGSSTQEKVEDNSESSTLVIQSYFSSVASNIGDAEESLTVKPIKKIPKVQCRVCFKVITKSYYKEHFALHDHTAAKYVCDICGKSFRQRCSYRKHYFTHSSEFPWKCKLCPYRGRHSGLLKTHMHVHTGDYRFMCTECPARFLTKSNLNKHSLKHKEPLFKCDTCQRGFHSKLNLERHFEADHLGIKNHICHVCGKAFGYRKAMMRHQLDVHKREKKVNGRTPAYIEAELKNLDSFL

Sequence clustering based on sequence similarity using MMseqs2