Basic Information

Insect: Trichoplusia ni
Gene Symbol: ush
Assembly: GCA_003590095.1
Location: NC:293816-303163[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0034 0.17 12.1 0.2 1 20 95 114 95 116 0.95

2 9 7.3e-05 0.0038 17.4 0.9 1 23 154 176 154 176 0.98

3 9 0.046 2.3 8.6 0.6 3 21 207 225 206 226 0.92

4 9 0.016 0.84 10.0 3.9 2 21 466 485 465 486 0.95

5 9 0.0057 0.29 11.4 0.2 3 20 515 532 513 534 0.91

6 9 3.5 1.8e+02 2.6 0.0 2 23 562 583 561 583 0.93

7 9 0.0072 0.37 11.1 1.3 1 23 589 611 589 611 0.99

8 9 0.38 19 5.7 0.7 1 23 650 673 650 673 0.95

9 9 0.15 7.9 6.9 0.7 2 20 705 723 705 725 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0034	0.17	12.1	0.2	1	20	95	114	95	116	0.95
2	9	7.3e-05	0.0038	17.4	0.9	1	23	154	176	154	176	0.98
3	9	0.046	2.3	8.6	0.6	3	21	207	225	206	226	0.92
4	9	0.016	0.84	10.0	3.9	2	21	466	485	465	486	0.95
5	9	0.0057	0.29	11.4	0.2	3	20	515	532	513	534	0.91
6	9	3.5	1.8e+02	2.6	0.0	2	23	562	583	561	583	0.93
7	9	0.0072	0.37	11.1	1.3	1	23	589	611	589	611	0.99
8	9	0.38	19	5.7	0.7	1	23	650	673	650	673	0.95
9	9	0.15	7.9	6.9	0.7	2	20	705	723	705	725	0.92

Sequence Information

Coding Sequence: ATGCCGGGAGAACCTCGCACACCAAGCTCAGGAGGCGAGCGCGCCGCGTCGAGCGGGGGAGCCTCGCCCGCGTCCGGGGGCTCGCCTGCCGCGTCGCCGCCTCGCCTGCGCCTCAACACCAGCCTCGCCACTGACCCGGCGCTCGCTCCGCAGGCCACCTCGCTCAAACACGAGCCACCATCACCGTCACCGCCACCACCACCGGCGCCACAAGCAAGAGACTACCTCGCTTTGACGGCGGCCGCGTTTCCAGGACTTTTTCCTGCATCTACCGCCCCGAGCTACGTATGCAAGCCGTGTGGCATTCGCTACTCGTCTCTGAGTACATTGCAAGCACATCAAGAACACTATTGTTCGAATAGATTGCCTAAGCCAACAGAAGGAGCAAACGCAACAGCTGACCCTTCAGTTGATGAGTCGAGCAGTGATGCGAAAACTCCGCGTCCTGCCGGCAAACAGTATGCGTGCACATACTGTTCATATAGTGCCGACAAGAAAGTTAGTTTGAACAGGCACATGAGGATGCATTCATCGTCGCCAGTAAGCAGCGGCACTCCAGCGCCGACACCGACCTCTAACGGTGAAGCCACAGAGGGTCCGCCGGTACAGGACCGCTACTGCGCAGACTGTGATATTCGATTTAGCTCTATCAAGACTTACCGAGCGCATAAACAGCATTATTGTAGCACAAGACAAGTTGTAAAGCAAGCGCTGGCAGCAGCTCGAGGCGGCTCGGCGACGTCCGGATCCGCGCCGCCCTCCCCGGGAGCTACTCCACCAGCGCAGAACCAGTACGCCCTCGCGTTACCGACTAATCCCATTTTAATTGTACCCTACTCACTGTTACGGAGTGCCAGTACTCTCCCGGGTGCGACACTGCCCGACCCTGATACGCCATGTTTCTTGTTACCAAATGGAACTTTCCAGCCTATCAGTCGAGCTTTATCCAACATAAACGCCGATGGAAAAGAACCTGAGGTTTTGAAATCAGCAAATAGACCTCGAGAGCCATCAAGAGACGGAGCCACTCCTCTGGACCTTAGTGTCCGGCGGTCGCCAGAATCGGTGGTAACTGATGAACACGAAAAAGAGAATAGGATACGTTCCGCGACACCCGAGCAGATAGTGTGTGCTCCTTCTCTGCCAGGATCTCCAGGCACACCGTCTCCGTCTCGAAGGTCCTCATCGCCGAGCGCAGAAAGCTCGCCTAAACGACGGCGGCGGAACTCCCGAGGGCCCACACCAAAACCTCCCAGCGTGCCCTCGCCACCTGAAGAAAAATTCACACCAATCGTTCCTCCCGCAATTCTTCCTCCTGCTCTTGCAATTCGCCTCGCATCAGAATTGCCAGTGACGGCAGCATCTCCTCAAGTGCTTGTAAAGCAAGGAGTTTCGAAGTGCAAGGAATGCAACATCGTGTTTTGCAAGTATGAGAACTACCGCATCCACAAGCGGCACTATTGCTCGGCGGGCGGCGGAGAGGAGCGCgccagccccgcgccgccggAGCCGGGCCCGCCGCCGCAGTACCGCCAGCTGATCTGCCTCGCGTGCGGCATCCACTTCAGCTCGCTGGACAACTTGACGACGCACCAGTCGTTCTACTGCACGAAGCGCGAGACTCGGTCGCCGCGCAGCGTGCCGGAGGCTCCGCGGCCCACGTCGGGCTCGGAGGGAGGGTGGAAGTGTCCCTGCTGTGAGGTGGTGTCgcccaccgccgccgccgcgcagcgCCACATGGAGGCGCACGCCGGCGTCAAGGCCTTCCGCTGCACCATCTGCCGGTACCGGGGCAACACGCTGCGAGGCATGCGCACGCATATTCGCATGCACTTCAACAACAAGAAACCTGCTGATCTGCAGGAGGAGAGCTACATAGCATGCGTGCTGGAGGAAGACAGTCGCGAGGCGACCTCCCCGAGCCCAGCGGTGGGCGGCGAGCGCGTGCACCGCTGCGGCAGCTGCGCCTACACCTCCACCTACCGCGGCAACGTCGTGCGACACGCGCGCCTCGTACACGCCACCGACGAACCAGAGGAAGAACAGACCTCCCCAGTCCCAACAGTGGACATCAAAAAGGAACCAGAGACAGAACTAGAGGAGACCCCAAACTACTGCAAGTCGTGCGACATATCGTTTAAATACGTGAACACTTACAAAGCACACAAGCAGTTCTACTGCACCGCTAACAACCAGGATGCGGCGGCCAACAACAACGTGCCTACGCCCGCCAGGGTCACAGACACTCCTGTACTATAA
Protein Sequence: MPGEPRTPSSGGERAASSGGASPASGGSPAASPPRLRLNTSLATDPALAPQATSLKHEPPSPSPPPPPAPQARDYLALTAAAFPGLFPASTAPSYVCKPCGIRYSSLSTLQAHQEHYCSNRLPKPTEGANATADPSVDESSSDAKTPRPAGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTPTSNGEATEGPPVQDRYCADCDIRFSSIKTYRAHKQHYCSTRQVVKQALAAARGGSATSGSAPPSPGATPPAQNQYALALPTNPILIVPYSLLRSASTLPGATLPDPDTPCFLLPNGTFQPISRALSNINADGKEPEVLKSANRPREPSRDGATPLDLSVRRSPESVVTDEHEKENRIRSATPEQIVCAPSLPGSPGTPSPSRRSSSPSAESSPKRRRRNSRGPTPKPPSVPSPPEEKFTPIVPPAILPPALAIRLASELPVTAASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSFYCTKRETRSPRSVPEAPRPTSGSEGGWKCPCCEVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEEDSREATSPSPAVGGERVHRCGSCAYTSTYRGNVVRHARLVHATDEPEEEQTSPVPTVDIKKEPETELEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDAAANNNVPTPARVTDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00006662;
80% Identity: -