Basic Information

Insect: Trichoplusia ni
Gene Symbol: -
Assembly: GCA_003590095.1
Location: NC:4052896-4062850[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 4.2 2.2e+02 2.4 0.4 3 23 307 328 305 328 0.93

2 10 0.65 33 4.9 0.9 2 23 353 375 352 375 0.93

3 10 0.00062 0.032 14.5 2.8 3 23 399 419 397 419 0.95

4 10 0.034 1.7 9.0 2.1 1 23 423 445 423 445 0.94

5 10 0.0008 0.041 14.1 1.6 1 23 450 473 450 473 0.97

6 10 0.044 2.3 8.6 0.4 2 23 481 503 481 503 0.90

7 10 4.7e-05 0.0024 18.0 2.4 1 23 510 533 510 533 0.95

8 10 3e-05 0.0015 18.6 1.7 1 23 539 561 539 561 0.93

9 10 0.039 2 8.8 1.5 1 23 567 589 567 589 0.97

10 10 2.1e-06 0.00011 22.2 1.2 3 23 597 618 595 618 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	4.2	2.2e+02	2.4	0.4	3	23	307	328	305	328	0.93
2	10	0.65	33	4.9	0.9	2	23	353	375	352	375	0.93
3	10	0.00062	0.032	14.5	2.8	3	23	399	419	397	419	0.95
4	10	0.034	1.7	9.0	2.1	1	23	423	445	423	445	0.94
5	10	0.0008	0.041	14.1	1.6	1	23	450	473	450	473	0.97
6	10	0.044	2.3	8.6	0.4	2	23	481	503	481	503	0.90
7	10	4.7e-05	0.0024	18.0	2.4	1	23	510	533	510	533	0.95
8	10	3e-05	0.0015	18.6	1.7	1	23	539	561	539	561	0.93
9	10	0.039	2	8.8	1.5	1	23	567	589	567	589	0.97
10	10	2.1e-06	0.00011	22.2	1.2	3	23	597	618	595	618	0.96

Sequence Information

Coding Sequence: ATGTCGGAAGTAAAGAATGAAATAGCGACTTATTTCGGGAGATGCAAGTGTTGTCTCTCCTATGGATACCTTAAGAACATGTGGACTGAACACCAATTTGAGGGAGAATCGGAAGTATACGGCGAAATGCTTGTCGACTGTTTTGCTCTCACTTGGGACAGTTCCGAGTCCATCGATCAAGACCAGATATGCGAGCAGTGTGTCAACAGGTTGCGGGACGCGTGCGACTTCAAGAAGATCGTCCTCACCTCGCAGGAGGATTTCTACCGGCAGTTAGGAGATGGTGATGATAAAGACACAATACCAAAACTCGAAGACTGCGACGAGGAGTACCTCATGGTGTATAAAGAGGCGGATAGCGACACCGCTGACACAGCTGACACCGACACAGCTGACATGGACGTCAGTGTCAACGACGCCAGCGCGTGCGATGAAGAATACGAGGATGTTGAATACCTGGAGGACGAGGTTGGTGGAGACGCTAAGGAGGCTTTAGTTGCAACTTCATCAACGCAAGCTCAAAAACCGAAACGACGTCGCAAGGCCGACACTCCAACAGACTCAGACGACGGCGTTAAAAGAAAATGGCCGAAACGTCTCCCCAAGAACGAGAGATTCAAAACGTACAAGCAATACACGGAGGAGAATCTAAGACAGTGCTTGGAGGCCGTACGAAGTGGAGAAATAACACCGAACGATGCAGCAAGAAAGTATAATATACCGAAGAAGACGATTTGTGCGAAAATGAGGCTGGAACCGACAGATGCACTGGGAACTAAAAATACTACGGAGACTTCACTGCATCAGCTACAAAACAATGAAAGGACtatactgaaaaaatataaagataatgtgCGTTTAATTATAACGAATTCTAACGCTACCCCGATTAAAGGGCGCTGGGGAATCGGCTACGGCTGTCTCTACTGCGAATACCATACTCAAATACCAGCAGAATTAAAAGAACACacgacaaaaatacacaaaaacgacacaggaaaaaataaagttaaatccGTAGCAgatatgattataaaattagaTATAACTGACTTAAAATGCAAGCTTTGTgccaaagaaataaacaatctCCAAGATTTTATGCAGCATCTACATCTAATACACAAATTACCAATCAATTTTGATATTAACAACCATATAGTGCCCTTCAAGTTTAAAACAGAACAACTGCTATGTGCGTTATGCGACAAACCGTTCAGTCATTTCAAACATTTAACCGAACACATGACTGATCATTACCCCAACTACAAATGCGATGAATGTTCAAGACAGTTCATAAATCTGCGATCGCAGAAGATACATTCGTTTCGACATCGCATAGGGACATTCAAATGCATGCACTGTCCAAAAATCTTCAACACACGAATCAAAGTTAAGGAGCACGAAAGAGTTATACACCAAAACGGTTCGAAAACACGAAAATGTGGGTATTGTGACGAAAAATTCATGGATTCCGTACAGAGAACGAATCATGAGGTCAAAGTCCACGGAATTCAAATGCCGAAGTTTGAATGCAAAGCGTGTGGCAAAAGTTTCGATAGTCAACGATCTTTGAATAACCATGTCAACCATTTTCATTTGTTGCTAAGGCCTCATATTTGCCCGGAATGCGGTAAAGGTTTTTATAAGAAGAATGAATTGAAGAGGCATTCAGTCAAACACACTGGTTTGAGAGAGTTTCAGTGCAAAGTTTGTTTCAAATGGTACGGGTCGAAGAGATCTTTAACGGCACACTCCAAGTTGCACGAAGATAGAATTGTTTTAGCTTGTGAGTATTGTCCGAAAACGTTTAAGAATAAGAACGGATTGGTTCACCATATTAGGAGTCAACATGGTAATATATATTAA
Protein Sequence: MSEVKNEIATYFGRCKCCLSYGYLKNMWTEHQFEGESEVYGEMLVDCFALTWDSSESIDQDQICEQCVNRLRDACDFKKIVLTSQEDFYRQLGDGDDKDTIPKLEDCDEEYLMVYKEADSDTADTADTDTADMDVSVNDASACDEEYEDVEYLEDEVGGDAKEALVATSSTQAQKPKRRRKADTPTDSDDGVKRKWPKRLPKNERFKTYKQYTEENLRQCLEAVRSGEITPNDAARKYNIPKKTICAKMRLEPTDALGTKNTTETSLHQLQNNERTILKKYKDNVRLIITNSNATPIKGRWGIGYGCLYCEYHTQIPAELKEHTTKIHKNDTGKNKVKSVADMIIKLDITDLKCKLCAKEINNLQDFMQHLHLIHKLPINFDINNHIVPFKFKTEQLLCALCDKPFSHFKHLTEHMTDHYPNYKCDECSRQFINLRSQKIHSFRHRIGTFKCMHCPKIFNTRIKVKEHERVIHQNGSKTRKCGYCDEKFMDSVQRTNHEVKVHGIQMPKFECKACGKSFDSQRSLNNHVNHFHLLLRPHICPECGKGFYKKNELKRHSVKHTGLREFQCKVCFKWYGSKRSLTAHSKLHEDRIVLACEYCPKTFKNKNGLVHHIRSQHGNIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01487648;
90% Identity: iTF_01487648;
80% Identity: iTF_01487648;