Basic Information

Insect: Trichoplusia ni
Gene Symbol: -
Assembly: GCA_003590095.1
Location: NC:4079741-4083491[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.45 23 5.4 1.4 1 23 254 277 254 277 0.96

2 8 0.0039 0.2 11.9 5.1 1 23 343 365 343 365 0.97

3 8 0.00064 0.033 14.4 3.1 2 23 370 391 369 391 0.96

4 8 0.0001 0.0053 16.9 0.3 1 23 396 419 396 419 0.96

5 8 0.62 32 5.0 1.5 2 23 425 447 424 447 0.93

6 8 0.00028 0.014 15.6 1.8 1 23 453 476 453 476 0.97

7 8 1.1e-05 0.00059 19.9 1.7 2 23 482 503 481 503 0.97

8 8 1.2e-06 6.3e-05 22.9 1.1 1 23 509 531 509 531 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.45	23	5.4	1.4	1	23	254	277	254	277	0.96
2	8	0.0039	0.2	11.9	5.1	1	23	343	365	343	365	0.97
3	8	0.00064	0.033	14.4	3.1	2	23	370	391	369	391	0.96
4	8	0.0001	0.0053	16.9	0.3	1	23	396	419	396	419	0.96
5	8	0.62	32	5.0	1.5	2	23	425	447	424	447	0.93
6	8	0.00028	0.014	15.6	1.8	1	23	453	476	453	476	0.97
7	8	1.1e-05	0.00059	19.9	1.7	2	23	482	503	481	503	0.97
8	8	1.2e-06	6.3e-05	22.9	1.1	1	23	509	531	509	531	0.98

Sequence Information

Coding Sequence: atgatGGATGATGAGAATACAGAGAGTTGGATCTCACAGCCAGATGTTTGCCGATGTTGTTTATCTGCAAGCGGGACCTGGGACATGACCGCGTCTTATATTACGGAGGCCGGTAGCAAAGAGGTTTATTCAGAAATGGTTCGAGAGTGCTACGGCGTttcaCTATCTTACCTGATGGAGTGGGGTCCAAGTAGGATGGTGTGTGCTCTCTGTGTGGGGCACCTGAGAGACGCTTGCAGTTTCCGGAAACAAGTGATGAAGGCAGAGAACCGGTTCATAGCTTATTATGACAGCAGGAAAGATGAATTCAACTCAGTGCCAGTCAAGTTGGAGCAAGACCTTAGTCCAGACATCTCAGACAGTCCAAACTGTTTCAACAATGACTTAGATACTAATGaagctttattaaaaactcaagTAGTAGATACCAGCACATCTAAGAGAAAGAGACAAAAAACCGCACTGAAGTGTAAAAAAAAGAGAGAAAAGATAGTAGACGATGATTCGGACACGCCCATTTCTGAGCtgtcaaagaaaaatgtatcttaTGACGTTGAAGATAAGATTGAAATTGGTTTAAATGGAATGGAAGTTATAGAAAATGGTTTTAAATGTCTTGATACTGCGGAGAtagGTACCACCCACACAAGATTACAAAACGGTGTAAAGCAAGTTTCAGAACGCAAGCGAGTCATGTTAACATGTGAAACTGTCCTAAGAGACACCACAGCCTGCCCCTTCAGACACCACAAAAGCTGGTTCCAATGTTTCTTCTGCCAACAAGACTTCATGGAAATAAACCTCCTTCGAGACCACACATTAAAAACCCACGCCGACGTAaacgaagaaataaaaaaaataaaacgttaccCGCGCTCCTTACAAATCGAAATTTCGAATCTTGAATGCCGCTTATGTCAGTTGACTTTGACAGATGTCATTTCGATGTGCTGCCATTTTATTGAGGTTCATAAAAAGGTTGTTTATAAAGAATGTATTGCTGATTATAAAGTTAATGGCAGTCCATATTCATGTCATCTCTGTGGAAAACAATTTCACGTATTTAGAACTTTAACAACACATCTGAACGAACATTACGCGAACTGCATATGCGATGTATGCggcaaatcatttttaaattcgaaaaGGTTAAAAGTCCACAAGCGTACGCACGAAAACGGCCATTTTCCGTGTAAAGAGTGCGGTAaagtacttaaaactaaaacttctAAAGCCAATCATATGGAAAGTGCTCATTCGAAACGCGTTATTAAAtgtcaaatatgttttaaaccTATGAAACATTATAATGACCGAATAAAACATATGTCTGAGGTCCATAATATCACGCATAAGTTCAAATGTCCTATCTGCAGTAGAGAGTATAATATTAAGCATTATTTAGCGACGCATATACGTCAGACGCATGGGCATAAAAACAAGAAGTGTTTGGAATGTGGCATGGCGTTTATAACGAACCATGGTTTGAAGAAACATATGTTGAAACACACTGGGGTTAAACCGTTTTCTTGTACTGTTTGTAGTAAGGCATATGCGAGGAGTTATACTCTAAGGGAGCATATGAGATCACATGATAATGAAAAGAGGTTTGTTGAGAAtgaatga
Protein Sequence: MMDDENTESWISQPDVCRCCLSASGTWDMTASYITEAGSKEVYSEMVRECYGVSLSYLMEWGPSRMVCALCVGHLRDACSFRKQVMKAENRFIAYYDSRKDEFNSVPVKLEQDLSPDISDSPNCFNNDLDTNEALLKTQVVDTSTSKRKRQKTALKCKKKREKIVDDDSDTPISELSKKNVSYDVEDKIEIGLNGMEVIENGFKCLDTAEIGTTHTRLQNGVKQVSERKRVMLTCETVLRDTTACPFRHHKSWFQCFFCQQDFMEINLLRDHTLKTHADVNEEIKKIKRYPRSLQIEISNLECRLCQLTLTDVISMCCHFIEVHKKVVYKECIADYKVNGSPYSCHLCGKQFHVFRTLTTHLNEHYANCICDVCGKSFLNSKRLKVHKRTHENGHFPCKECGKVLKTKTSKANHMESAHSKRVIKCQICFKPMKHYNDRIKHMSEVHNITHKFKCPICSREYNIKHYLATHIRQTHGHKNKKCLECGMAFITNHGLKKHMLKHTGVKPFSCTVCSKAYARSYTLREHMRSHDNEKRFVENE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01221989;
90% Identity: -
80% Identity: -