Basic Information

Insect: Trichoplusia ni
Gene Symbol: salm
Assembly: GCA_003590095.1
Location: NW:11-12284[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.3 16 6.0 1.9 1 21 236 256 236 257 0.94

2 8 4.3e-06 0.00022 21.2 0.9 1 23 556 578 556 578 0.98

3 8 8.5e-06 0.00044 20.3 2.1 1 23 584 606 584 606 0.98

4 8 1.1 58 4.2 3.0 5 23 904 922 901 922 0.92

5 8 9.3e-08 4.8e-06 26.5 1.2 1 23 928 950 928 950 0.97

6 8 0.0006 0.031 14.5 4.4 1 23 960 982 960 982 0.98

7 8 0.0063 0.32 11.3 2.2 2 23 1161 1182 1160 1182 0.97

8 8 0.028 1.4 9.2 1.6 1 16 1188 1203 1188 1205 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.3	16	6.0	1.9	1	21	236	256	236	257	0.94
2	8	4.3e-06	0.00022	21.2	0.9	1	23	556	578	556	578	0.98
3	8	8.5e-06	0.00044	20.3	2.1	1	23	584	606	584	606	0.98
4	8	1.1	58	4.2	3.0	5	23	904	922	901	922	0.92
5	8	9.3e-08	4.8e-06	26.5	1.2	1	23	928	950	928	950	0.97
6	8	0.0006	0.031	14.5	4.4	1	23	960	982	960	982	0.98
7	8	0.0063	0.32	11.3	2.2	2	23	1161	1182	1160	1182	0.97
8	8	0.028	1.4	9.2	1.6	1	16	1188	1203	1188	1205	0.91

Sequence Information

Coding Sequence: ATGTCGCTTATGAATATGAGGCGTTATGATTATGAAAATATGCCCCGCCCCGAATATGGAATATGGAGGAGGGGGGCCCGTGAAGCGCGTGCGAATGGGCGAAGTTTGATTTATGAGCCGGGCGCGGCCCCGCCTCCCTGTCATAACCGTATACCTGGtgcgcgcgcgcgctgccgcccgccgcccgccgctcGCCTCGCGCTCAGTCCCGCTTCAGATGGCGAGTGGTGCGCTCGGTCACACGCCGCGTCCGCTCCGCTCAGTGTACTTCGTCCGAGGCGAGTAGCCGGCCCGCGAGTGCGCCCCGAGGAGCCCTGCGCCTGCCATGCGCCGGCCCTGAGCCGAGTCCGCAGCGCCGCACCATGCCGCGCGTCAAGCCCTCCTGCGTCCGCCGCGTCTCCATCGGTACTTAACGTTCCTACGACATCTCACCAGTCACCACATCACACACGACGTCTCCGCCACATCCGACGACCTGTGACCCCACTCTCAGGAggaataatttgtgtttttgtcgATACGTTATTGTTGAATCCACGATTTGATATTCGTACCGATAAAATGATTCAGTTAGCGACGATAAAATTCGGCATACATGACAAAGTGAGCACTAAAATTCGTCACCAACGGGGTGAAAGTTCGGGCTCGTGTTCCGAAGAAGATATTAACAATGCGTGTGATGAAACGAGAGACCGGCCTGAAGCGCACATGTGTCCGCGCTGTCAGGAACAGTTCGAAAACCTTCATGAGTTTCTGTACCACAAGCGACTTTGCGATGAGAAAGCATTGCAAATGGGCGAGGAACGAATGCATTCTGATCCCGAGGAAATGGTCGTTTCTGGCGACGAAGAAATGGATGGACCTAACAAACGTTTAGAACAAGTCCGACGGCATCGACAAGATGCGGAGAATAATAACAGCCTCGAAGATGGCGAGGCAGAAGTGCCTGAAGCCGACGTGCCGCCGGTCGGGTTGCCCTTCCCGGTGGCCGGACATGTCACGCTCGAAGCTTTACAAAATACTAAAGTAGCCGTAGCGCAATTCGCCGCGACAACAATGGCAAACAACGCAGATAATGAAGCGGCGCTACATGAACTGGCCGTGCTTCAAAGCACGTTATTTACGCTCCAACACCAACAAGTGTTTCAGCTGCAATTAATACGCCAATTACAAAACCAGCTATCATTAACGCGGCGAAAAGATGACCAGCTCCCGAGCCCGCCACCGAGTGAACCAGAGCCGGCGCAAGCGGCTCCCGCTCCGTCGCCGTCACCGCCGCGTCCGCCACGGGAGCCCACTCCTGTCGCTCCCACTCCCCCTACTAGTCAAAGCTTGCCGTCAACCCACTCGCATCTTACACCTAAGACGGAACCAATTACCGTTCCCAAACTCCCGACCTCATCTCCTCCGATGATGTCCCATCCACCTTACAGCTCCATTTCCTCGTCGTTAGCGTCTTCAATTATCACAAACAACGACCCACCACCGTCTCTCAACGAACCTAATACGCTTGAAATGCTACAAAAGAGAGCACAAGAAGTGTTAGACAATGCATCCCAAGGTCTGCTAGCTAATAATCTTGCCGATGAACTTGCTTTCCGTAAATCGGGAAAAATGTCACCCTACGATGGAAAATCAGGAGGAAGAAATGAACCCTTTTTCAAACACCGTTGCCGTTACTGCGGAAAAGTATTTGGAAGCGACTCTGCGCTGCAAATCCACATTCGATCACACACAGGTGAAAGAccatttaaatgtaatgtatgtGGATCACGATTTACAACCAAAGGgaatttaaaagtacatttCCAAAGACACACAGCAAAGTTTCCTCATGTCAAGATGAATCCTAATCCAGTGCCAGAACATTTGGATAAATACCATCCCCCACTGCTAGCGCAATTGTCGCCGGGACCAATTCCTGGAATGCCACCACACCCACTTCAGTTCCCTCCGGGTGCGCCAGCTCCTTTCCCGCCAAGCTTGCCGTTATACAGACCCCCGCACCACGACTTACTGCCGCCACGTCCGCTCGGAGACAAGCCTCTACCACCTCACCCACTATTTACAATGCGAGAGGAACAAGATGCTCCGGCTGATCTCAGTAAACCATCCGCGCCGAGCCCTTCTCGATCAGCACCCGAGGTTAAGTCTGAACCACAAGACGAAGACTGTCACCGAGAATCCAGTTTTGAAGATACAGACCGCGTGTCTCCTAAGCGAGAACTTGATGAAAACGACGCGACTCAAGATCCAGAACAAGACCGATACCCGTCTACATCGCCCTACGACGACTGCAGCATGGACTCGAAATATAGCAATGAAGAACAAATCGGCAGAGAGAGTCCTCATGTGAAGCCCGATCCAGATCAACCGGAAAATCTCTCAAGTAAGAATTCACCGATATCCGGGCCAATTTCAATAGCAACGGGACTGCGTACTTTTCCTTCGTATCCTCTTTTCCCTCAGTCACCACCCAGTAGTATATCCTCAGGTAGTTTAACTCCTTTTCCTAACACTATGCAAAACGTCGTTGATGTAGATCTGGCACGTGATCCCGTATTTTATAATTCACTCTTGCCTCGCCCAGGCAGTAATGATAACTCTTGGGAGAGTTTAATAGAAATAACGAAAACTTCTGAAACATCAAAGCTCCAACAGTTAGTCGATAATATAGACAATAAAGTCTCTGATCCTAACGAATGTATTGTATGCCACCGCGTTCTCTCTTGCAAGAGTGCCTTACAAATGCACTACCGTACGCACACGGGCGAAAGGCCTTTTCGATGTAAATTGTGTGGCCGTTCTTTTACGACTAAAGGTAATTTGAAAACGCATATGGGCGTTCATCGCATTAAGCCGCCAGTTCAAATGTTACATCAATGTCCAGTTTGCCATAAGAAATTTTCGGATCCTACCATATTACACCAACATATAAGACTTCACACAGGCGAGCGCGCCCACGTCCCTTACGATCAAATCAGAGGTATTGATATTGAGGGTTTTCCATCTCTAAGTAACGGGTCAGACGTCAGCGACTATCAAGCTCAGCGTCCCTTCCCGCGCCCGATGTTCCCTACTCCGACCACTCCCGGCGACCGACGGGCGGACTCCCGCGGGACCGACGATGAGAGCGGCCGGGACGAGCGCGAGCCCGCTATTCGGGAGTTCGACGACGACTTAGACATGAAGGATCGTCGAACTTCGCCGCTCTCCGTCTGCGCCTCGGCGTCCGAAAGCGAAATAAAAACCATCACCACAACGGCTTCCCTCCCATCGGCGACAGGTTCGGAGAGCGGGCGCAGCGCGCGGGCCTCACCACCTTCGCCCACCATGTCGACGCTGTCGACGCCGCCGCGGCTGCCGCTGCACTCGCCGCTGCCATCGCCGCCCACGCCTATCGCCGCACTTGGGGCGCTCGGAGGATCGCCCTTCAGCCCGCTCGGACTTGCGTTTCCTCCCGCAGTGCGCGGCAACACGACCTGTAACCTCTGCTACAAGACGTTCGCCTGCAACTCCGCCCTGGAGATACATTACCGGAGCCACACCAAGGAGCGACCCTTTAAGTGCACCGTCTGCGATCGCGGATTCTCCACAAAGGTTTGTCTCTTAAACCTCTTATTTAATCATACCCTTTGA
Protein Sequence: MSLMNMRRYDYENMPRPEYGIWRRGAREARANGRSLIYEPGAAPPPCHNRIPGARARCRPPPAARLALSPASDGEWCARSHAASAPLSVLRPRRVAGPRVRPEEPCACHAPALSRVRSAAPCRASSPPASAASPSVLNVPTTSHQSPHHTRRLRHIRRPVTPLSGGIICVFVDTLLLNPRFDIRTDKMIQLATIKFGIHDKVSTKIRHQRGESSGSCSEEDINNACDETRDRPEAHMCPRCQEQFENLHEFLYHKRLCDEKALQMGEERMHSDPEEMVVSGDEEMDGPNKRLEQVRRHRQDAENNNSLEDGEAEVPEADVPPVGLPFPVAGHVTLEALQNTKVAVAQFAATTMANNADNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKDDQLPSPPPSEPEPAQAAPAPSPSPPRPPREPTPVAPTPPTSQSLPSTHSHLTPKTEPITVPKLPTSSPPMMSHPPYSSISSSLASSIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFPPGAPAPFPPSLPLYRPPHHDLLPPRPLGDKPLPPHPLFTMREEQDAPADLSKPSAPSPSRSAPEVKSEPQDEDCHRESSFEDTDRVSPKRELDENDATQDPEQDRYPSTSPYDDCSMDSKYSNEEQIGRESPHVKPDPDQPENLSSKNSPISGPISIATGLRTFPSYPLFPQSPPSSISSGSLTPFPNTMQNVVDVDLARDPVFYNSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIDNKVSDPNECIVCHRVLSCKSALQMHYRTHTGERPFRCKLCGRSFTTKGNLKTHMGVHRIKPPVQMLHQCPVCHKKFSDPTILHQHIRLHTGERAHVPYDQIRGIDIEGFPSLSNGSDVSDYQAQRPFPRPMFPTPTTPGDRRADSRGTDDESGRDEREPAIREFDDDLDMKDRRTSPLSVCASASESEIKTITTTASLPSATGSESGRSARASPPSPTMSTLSTPPRLPLHSPLPSPPTPIAALGALGGSPFSPLGLAFPPAVRGNTTCNLCYKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKVCLLNLLFNHTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00383064;
90% Identity: -
80% Identity: -