Basic Information

Insect: Trichoplusia ni
Gene Symbol: ZEB2
Assembly: GCA_003590095.1
Location: NC:4718333-4729434[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00057 0.029 14.6 2.9 1 23 200 223 200 223 0.97

2 11 9.6e-05 0.0049 17.0 1.7 3 23 232 252 231 252 0.97

3 11 1.9 98 3.5 2.4 1 23 256 278 256 278 0.93

4 11 2.5 1.3e+02 3.1 0.5 3 23 283 304 282 304 0.96

5 11 1.6e-05 0.00081 19.5 3.2 1 23 307 329 307 329 0.98

6 11 0.00069 0.035 14.3 0.5 1 23 333 356 333 356 0.93

7 11 0.17 8.7 6.8 0.1 5 20 367 382 364 383 0.88

8 11 0.0014 0.073 13.3 1.2 1 23 399 422 399 422 0.93

9 11 1.6 81 3.7 11.2 1 23 428 450 428 451 0.95

10 11 2.1e-05 0.0011 19.1 0.2 3 23 462 482 461 482 0.99

11 11 0.00024 0.012 15.7 1.1 1 23 488 511 488 511 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00057	0.029	14.6	2.9	1	23	200	223	200	223	0.97
2	11	9.6e-05	0.0049	17.0	1.7	3	23	232	252	231	252	0.97
3	11	1.9	98	3.5	2.4	1	23	256	278	256	278	0.93
4	11	2.5	1.3e+02	3.1	0.5	3	23	283	304	282	304	0.96
5	11	1.6e-05	0.00081	19.5	3.2	1	23	307	329	307	329	0.98
6	11	0.00069	0.035	14.3	0.5	1	23	333	356	333	356	0.93
7	11	0.17	8.7	6.8	0.1	5	20	367	382	364	383	0.88
8	11	0.0014	0.073	13.3	1.2	1	23	399	422	399	422	0.93
9	11	1.6	81	3.7	11.2	1	23	428	450	428	451	0.95
10	11	2.1e-05	0.0011	19.1	0.2	3	23	462	482	461	482	0.99
11	11	0.00024	0.012	15.7	1.1	1	23	488	511	488	511	0.97

Sequence Information

Coding Sequence: atgtataaaataaatgatgtaaaatataaagtatgtcTGGCTTGTTTAAGTAGTGATCGGGAACTGTTCTCAATCGATGAatacattgatatttttaacactattaCTAATGTCTCCTACAACgcTTTTCAACCAGTGTCTGTGTGCTGGGAATGTCTAGctatattaaaaaagataaaactttttaaaacaagagTAGAAGAGGCACAGAGTATATTGTCAAagcaacttattaaaaaaaagAAATCTCAATTCAAGACACTATCAAGACTAACTACTACATatacagataatataatattaataacacatgacgaaaatattgaaacaaaacaacaagtacaaataaaagaagaaattaaTGATGATATTGATGTCTATGATGCAGATAACAATGTCCTTTGccttgaagaaattaaaaaagaaaacaccatagataaaaaagttaaaaaagagagaacgaaaaataaaaactataaacttGTTTCTGGTGTACAGAGATACAAGTTTTTGAGAAAAAAGGTTTCTATTAATCCAGAAGATATTCAAATTTGGTTGAATAAAGATCGAAACAgtgatttttataagaatttcaaGTTTCAATGTACATTGTGTATACATAGCTTTAGTTCAAAGGATAAATTAAAAgcacacattttaaaatatcacgatgagtcACTCGCTACAAATATATGCACGACATGCAATTCCCGCTTCAGCACAGAGTCAGCTCTATGCGCGCATATGCGGGGACACATGCATGGATACGAATGTATCCGGTGCGGTTTCCAGTGTTACACACGGCGACGGTTTAATGCGCATATTAACGCACATGCCGTTGTGCTATGCGATAGCTGTGATGCCTGCTTACCAGATGTGGCAACATTTTCATATCATTACAAGACGTTGCACAGTTTGTATATATGTGATCAATGCGGGAAGCGATGTAAAACTAAACCTTTTCTGGAGAGACATATGAGCCGCCACGCCAGCGTTCACGCGTGCGCGTCCTGCCCGCGGCGCTACCGCTCGCGCGCGGGGCTGCAGCGGCACATCACTAGCGCGCACAGCCCTAGCGCGGCGCCCGCGTACTGCGCGCCCTGCGACCGCCGCTACCGCAGCGCCGCGCTCTACAGGAGGCATCTCACCTGCAGCGCCGCCCACGCGCATGAGAGGGACAACCAAACGAAGAAGTTCCTCTGTCCGGAGTGCGGCAACAGTTATTCGAGAAGGGTGTACATGATGAATCACTACCAACATGTTCATATGAAGCAGTCTAAGCATTACTGTTCGCACTGTGATAAGCACTTTCTGAATCGAACCCGCTACCTCGACCACATGAGATACCACCACGAGGGCGTTCAGAAGGAGAGGAATAAGTTATGTAACATCTGCGGGAGAGGATTTGCTgcaAACCGCACTTTAATGAATCATATAAGGACACATTCTGGCGAGCGTCCCTACGAATGTGAATACTGTTCAGCTAAGTTCACACAACGGACCTCCATGCTGACACATATCAAATATATACATTTGAAGAGCAAGAGAAAGGTGCAGTGGCAGTAA
Protein Sequence: MYKINDVKYKVCLACLSSDRELFSIDEYIDIFNTITNVSYNAFQPVSVCWECLAILKKIKLFKTRVEEAQSILSKQLIKKKKSQFKTLSRLTTTYTDNIILITHDENIETKQQVQIKEEINDDIDVYDADNNVLCLEEIKKENTIDKKVKKERTKNKNYKLVSGVQRYKFLRKKVSINPEDIQIWLNKDRNSDFYKNFKFQCTLCIHSFSSKDKLKAHILKYHDESLATNICTTCNSRFSTESALCAHMRGHMHGYECIRCGFQCYTRRRFNAHINAHAVVLCDSCDACLPDVATFSYHYKTLHSLYICDQCGKRCKTKPFLERHMSRHASVHACASCPRRYRSRAGLQRHITSAHSPSAAPAYCAPCDRRYRSAALYRRHLTCSAAHAHERDNQTKKFLCPECGNSYSRRVYMMNHYQHVHMKQSKHYCSHCDKHFLNRTRYLDHMRYHHEGVQKERNKLCNICGRGFAANRTLMNHIRTHSGERPYECEYCSAKFTQRTSMLTHIKYIHLKSKRKVQWQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -