Basic Information

Insect: Trichoplusia ni
Gene Symbol: -
Assembly: GCA_003590095.1
Location: NC:6539868-6547607[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0001 0.0052 16.9 1.7 1 23 191 213 191 213 0.99

2 12 0.25 13 6.2 0.7 2 23 221 243 220 243 0.90

3 12 0.23 12 6.4 2.1 1 23 247 269 247 269 0.93

4 12 0.0054 0.28 11.5 2.8 1 23 274 297 274 297 0.97

5 12 0.2 10 6.6 0.1 3 23 303 324 301 324 0.91

6 12 1.8 91 3.6 0.4 2 19 337 354 336 356 0.90

7 12 0.00044 0.022 14.9 0.4 2 23 369 390 368 390 0.97

8 12 0.00098 0.05 13.8 1.0 2 23 395 417 394 417 0.96

9 12 0.00014 0.0073 16.5 0.5 2 23 437 458 436 458 0.96

10 12 1.7e-05 0.0009 19.3 1.5 1 23 464 486 464 486 0.99

11 12 4.4e-05 0.0022 18.1 1.9 1 23 492 514 492 514 0.94

12 12 1.5e-05 0.00076 19.6 2.2 1 23 520 543 520 543 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0001	0.0052	16.9	1.7	1	23	191	213	191	213	0.99
2	12	0.25	13	6.2	0.7	2	23	221	243	220	243	0.90
3	12	0.23	12	6.4	2.1	1	23	247	269	247	269	0.93
4	12	0.0054	0.28	11.5	2.8	1	23	274	297	274	297	0.97
5	12	0.2	10	6.6	0.1	3	23	303	324	301	324	0.91
6	12	1.8	91	3.6	0.4	2	19	337	354	336	356	0.90
7	12	0.00044	0.022	14.9	0.4	2	23	369	390	368	390	0.97
8	12	0.00098	0.05	13.8	1.0	2	23	395	417	394	417	0.96
9	12	0.00014	0.0073	16.5	0.5	2	23	437	458	436	458	0.96
10	12	1.7e-05	0.0009	19.3	1.5	1	23	464	486	464	486	0.99
11	12	4.4e-05	0.0022	18.1	1.9	1	23	492	514	492	514	0.94
12	12	1.5e-05	0.00076	19.6	2.2	1	23	520	543	520	543	0.98

Sequence Information

Coding Sequence: ATGGAGAGGTTACTAGCATGTCGTGTTTGCCTCGCTACGGATGTTAATCTTTATGACATGTACAAATATAAGTTGAAAAACATGTATGAGTGTATCAGTGGGCTTTGCATAACTTCAACAGATACCTATCCGCAGTATTTATGCAGTTACTGCTGTGCCCTGGTCATCAAATGTGTAAATTTCAGGGATAGATGTCAAAAAGGCTATGAGTTGTTAAAGTATGCAGAGATTAATGGGCAAAGTATCAACCAATTAAAGTCCCTCTCATCCTCAAACCCGCTACCATACACAGCAACAGCTCCAGAAGTAACGGATCTTACGGAACAAGTTAAAACTGAACCGGATGTAAAACAAGAACCAGACTTGTCCGATGAAGAACCATTGTCTAATAAGGTGAAGAAGAAGTTTAATTATGAGGAGAATGAATTTGATGATGGCAATGATTTTAGTGGAGCGCCTGATGATAATGAACTTGGTGGAAACGAATTTGAGGTAATAATACTGACCAAAGAGGAACAACATCAAGAGATATTAGCTCGTAAAGAATCTTACAACTATTTACACTCTTACTACAAGTGCGATCTATGCTACAAAGGCTTCATACAAGATGTGACGTACAGGAATCATATGCGGAGACATGATCCGTCCAACGGCCCCTCACAATGCGACATCTGTCACACGCGCTGGCCGGACGCTCGCTCGCTAAAATCACACACAACAGCGTCACACGAACGCAAATACATATGCAAAATATGCAATCACATCACCAAGAGCTCCTTTCGTGCGAAAGAACACTTGAAGTGGCATTCAGGGTACAAGTTTGTTTGCAAACTCTGCGGAATGACGTTCGCAAAGTCGACGAGTCACTTGACACATCTGAGGACGCGTCATCCGAGTGACGTTAATTGTGATGTATGTGGTGAGAGTTTTCTGGGAGAAGTCGGGTTAAATATGCATAAGAAGAAGTCACATCGAGGATACGAGcaattaaatctaaaactaCATTTGAAATGTGTGACCTGTGGAGTTCAATTTAAATGTGTCGAAGCATTGAAGAAACATGTCGGTGACTTTGAAAATGGTGTTTGCGATCGGAATATCAGTTCTTGTTATCAATGCGGTGAGAATATAAAGAATCAAGAATTATTGAAGGATCATATAAAGACACACGAGGTCGCCGTTAGATGTGAAGAGtgTAATCGCAATTTTGCCCACGAGCGCTCATTCGCGGTCCATTATCAAAGGGTACATCTAGGTTATAACTTGAAACCTAAGTCTGGCAAGGAGAGGCCTAGGAAGTCAGCCTGGGTCTGCGAGATATGCGGCAAGAAATGCATGTCAAATGCAACGCTGATTTATCATCAACGAGCACATACGGGGGAAAAACCGTTCCAATGCAGCGAATGTCCGAAGAAATTCAGTGTTTTTCAGCGATTACagATACATCTTCGTACGCACACTGGTGAGAGGCCATTCAAGTGTTCGAGCTGTCCGAAGGCTTTTAAACACAAAGCGGCTTTGAATAGACATGATAGGGTGCATTCAGGTGTGAAGCCATACCAGTGCGGTCACTGTGCGAAGACCTTCTCCCAATCCAACTCCATGAAGCTACATGTCAGGACAGTTCATCTGAAGATGCCGGCTCCCTATAGAGGGAGGAGGAATAAAACTGAGTGA
Protein Sequence: MERLLACRVCLATDVNLYDMYKYKLKNMYECISGLCITSTDTYPQYLCSYCCALVIKCVNFRDRCQKGYELLKYAEINGQSINQLKSLSSSNPLPYTATAPEVTDLTEQVKTEPDVKQEPDLSDEEPLSNKVKKKFNYEENEFDDGNDFSGAPDDNELGGNEFEVIILTKEEQHQEILARKESYNYLHSYYKCDLCYKGFIQDVTYRNHMRRHDPSNGPSQCDICHTRWPDARSLKSHTTASHERKYICKICNHITKSSFRAKEHLKWHSGYKFVCKLCGMTFAKSTSHLTHLRTRHPSDVNCDVCGESFLGEVGLNMHKKKSHRGYEQLNLKLHLKCVTCGVQFKCVEALKKHVGDFENGVCDRNISSCYQCGENIKNQELLKDHIKTHEVAVRCEECNRNFAHERSFAVHYQRVHLGYNLKPKSGKERPRKSAWVCEICGKKCMSNATLIYHQRAHTGEKPFQCSECPKKFSVFQRLQIHLRTHTGERPFKCSSCPKAFKHKAALNRHDRVHSGVKPYQCGHCAKTFSQSNSMKLHVRTVHLKMPAPYRGRRNKTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01221889;
90% Identity: -
80% Identity: -