Tni009302.1
Basic Information
- Insect
- Trichoplusia ni
- Gene Symbol
- -
- Assembly
- GCA_003590095.1
- Location
- NC:10414058-10438543[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.51 26 5.3 0.3 2 23 494 515 493 515 0.95 2 18 0.0065 0.33 11.2 0.0 1 23 525 548 525 548 0.95 3 18 0.2 10 6.6 2.0 1 21 667 687 667 688 0.94 4 18 0.046 2.3 8.6 3.8 2 23 751 772 750 772 0.95 5 18 0.77 39 4.7 0.7 1 23 784 808 784 808 0.90 6 18 0.00017 0.0086 16.2 0.3 2 23 815 838 814 838 0.97 7 18 0.089 4.6 7.7 0.2 1 23 844 866 844 866 0.93 8 18 0.0044 0.22 11.8 2.9 1 23 872 894 872 894 0.98 9 18 5.7 2.9e+02 2.0 0.1 2 20 1325 1343 1325 1345 0.89 10 18 0.038 1.9 8.8 0.1 1 23 1424 1446 1424 1446 0.97 11 18 2.6 1.4e+02 3.0 7.2 1 23 1453 1475 1453 1475 0.95 12 18 0.0018 0.091 13.0 1.8 1 23 1507 1530 1507 1530 0.95 13 18 8.5e-05 0.0044 17.2 0.8 1 23 1537 1560 1537 1560 0.98 14 18 0.0049 0.25 11.6 0.2 2 23 1582 1604 1581 1604 0.96 15 18 0.0083 0.42 10.9 4.2 3 23 1624 1645 1623 1645 0.95 16 18 0.0011 0.055 13.7 1.7 3 23 1684 1704 1682 1704 0.96 17 18 0.00016 0.008 16.3 0.1 1 23 1710 1732 1710 1732 0.97 18 18 0.00049 0.025 14.8 0.7 3 23 1740 1761 1738 1761 0.95
Sequence Information
- Coding Sequence
- atgacagaAGCACAGCCTCCTTTGATTCTCTGCATGGAGAACGCAGCAGGAGAAGATGTGGCTCTTAAAATAGAGCCAGATGATAACTTTCAGACTTTTCTGGATAAAGCTAAGTCTTTACTAGGTTTCGATGTAGACCTCAACTCGATCACCAGAAACCAGCCTGTCTCCCTAGCAGACAATGTCTACCAATTCCTTATAACAGCTGAACAGAACTTGCAACAAGACGAATTGGCTCAAAACTTTGATCAAATGTTGGATCCAAACGATGGGGCCAACGATTTGGTCTACATACTAGACGATGGCACTCAGATACGAGCTTCGCAGATACATTTTGATAATGACGATCCGTTAATAGATCTCACAGCTGAAAAGATTCCCTTTGTGAAGTACGCTGATGACGTCACAGATGATTTAGACGTGGAAAATGTTAATATACAGGAAACTAAGAAGATTAATATCGTTGAGAGTCCAGTCTCTCGCTGGTCCAGTAAGAATTCCAGTCCGAAATGCAGTTTCGTGAACTCTCTGCCTTTCAAACTTGTATGCAATAATACGTCGGGTTTCGAAGCTCAATTCACGAAGTATCTAGAAGCTAACACAGCCAAAACGTACGCGACTTTGAACCCTGTGACAGCTAGGAATAAGTCTCCAAAAAGCTTGATAAAAGACAACTTTAAAAACTACGATGAGAGTTATCAACGTAGCGACAATCTATCTTATACTCGGGAGGACATTCTGAACATGTTCAAAGACTCCCCGATGACGTCACTGCCTTATGACCAAGGGTATGGTGAAAGACGACATGTTCGGAAGACCGACCCGTCCAGACTCGTTCATAAGAACTGGAACAAGCCGATTTCTTATGTCGATATTGACGGGACTTTGATTGGAGAAAGTGAGAGccagatttgttttatttgtgggAAACATGTTGATAACAGTGTCGATAAGTTGTATCTTTTCGATAATGAGGACCAAAGACTACACAGATGTTCGCCGCAGAAGAAAATGTCGAcgcaattaaaaattatatgtgAATGCTGCCTTAATGAGAACTTTAAGCCGTGCAGAATGAAAAGCGCCAACCAGTTTCTGAATCCGGACGAATTTCTAGTCATAAGAAACAACCAGCAATACATATTTCagaaaatcaaaaatttcaGTTTCACACATTTGGGGAAAGCGAAGGAAATCATAAACAAGATAGAATCTAAAGTCACAGACAAGGAAGAGTTCGTTAAAGTGGAAATTGGGTCAGATGGAGAAATTATTACCAAGCCCATAGACAATGATCCGCGTTCTGATGACGTGATCATAGTGAAGGACGAGAAAAAGGACGGCAGTTCCAGTGATGTAGAGATTATAGAACCGGAACCGGAAATAGATAATATCATAGACAATTTGGAGGAGGCTGATGAGGAGGTGAAGGAGTTTTTGGGGAAGTACCAGTGTGATAGCAGTGAGGTTACTGAACTTAAATGcagaTTCTGTGAGAAGATATTCGCTGAACTAACGGAAGTTACCGAGCATTCCGAGACACATAAACATGAGTTGGAAGATGGTGAAGTGTATCCATGTCCATTGTGTAACTATGGATATGCAAATCTAAAATGGCTGAAAGGTCACTTGAAAGCTGCCCACGAGAAATCTGAAACTAGCAATAAAGAAGATGATCAAATTAAAGAGGAAGACAAAGgcGACTCACAGACTTCGCCAAAAGTGTCGTCGCCGATAGCTAAGCGCACGCGCAGCTCTAGTAAGAAAGATGGCGATAGAAAAGATGAGAAGCCATCAGATGAAATTAAATCAGATTTGAACCCTGAAGAGGCGGAACCGCCAGTTATAAAAACGGAGGTGAAACAAGAGTGCGTGGACAGCAGCGAGGATGAGATCTGGATCGTGCAGACTGCTGATGCTGAGGCCACGCAGGAGCTGCAGAAGCTCATCGATGCTGCCAAGGTGACCGGTGAAGGGCAGGAAGAATCGACTAAGACACATAAATGCTTTAATTGCAGTCAAATATTCCCGAGCGCGGAAGGTCTGTCGAACCACCGATGCCGTCGACGCGGACGGAAGCGGAAGTCAAAAGACCTCGTCAACCTTATATGTATACCCACAGAAGAAGATTTTCTTAAGAGAGCACAGGGTCGTCCAAGACAAATTGATACATCGACCGACAATGATCTTCTAGTTTTGCGTCCAAGAAAAAGACGTAGCCGTGAACCGACCTCCAACCCTCAAGTGGTGACCTGTCACAATTGTAACGAATCCTTCACGTCTAAAGTTAGACTCAAGTTTCATATGCAGTTTCACGACACGACATCCTTGCTAGCGGCGGACGGCAGATACACCTGTTCGGAGTGCGACGGCGCCATCTTCTCGACGGAGACGGAGCTGTTCGACCACGTCCACTTCCAGCACGACAAGCAGAAGCAGTGGCAGTGCCCCGTCGATGGCTGCGGGAAGACCTTCTTCCTGAGGGCAACACTGACGAAACACAGTCGTACACACACAGACACGCGTCGCTACGTGTGTGTGACTTGCGGAAAGCGGTTTCTTGACAAGCAGACGCTGGACGAACATGGAGTTACTCATTTACAGATCAAGCCGTTCCAGTGCCACATCTGCCTGAAGCAGCTGACGCGGCGCTCGCGGCTGCGCATGCACGTGCGCGCGCACGAGGAGGAGCTGTCCCCCAGCCTCGTGCGCGTCTGCGCCGTCTGCGCGCGCGCCTTCCGGGACCATCCGCATGCACAGGTGCCCACTAGCTACACTCACATGCACGAGGAGGAGCTGTCCCCCAGCCTCGTGCGCGTCTGCGCCGTCTGCGCGCGCGCCTTCCGGGACCATCCGCATGCACAGGTGCCCACTAGCTACACTCACATGCACGAGGAGGAGCTGTCCCCCAGCCTCGTGCGCGTCTGCGCCGTCTGCGCGCGCGCCTTCCGGGACCATCCGCATGCACAGGTGCCCACTAGCTACACTCACATGCACGAGGAGGAGCTGTCCCCCAGCCTCGTGCGCGTCTGCGCCGTCTGCGCGCGCGCCTTCCGGGACCATCCGCATGCACAGGTGCCCACTAGCTACACTCACATGCACGAGGAGGAGCTGTCCCCCAGCCTCGTGCGCGTCTGCGCCGTCTGCGCGCGCGCCTTCCGGGACCATCCGCATGCACAGGTGCCCACTAGCTACACTCACATGCACGAGGAGGAGCTGTCCCCCAGCCTCGTGCGCGTCTGCGCCGTCTGCGCGCGCGCCTTCCGGGACCATCCGCATGCACAGGTGCCCACTAGCTACACTCACATGCACGAGGAGGAGCTGTCCCCCAGCCTCGTGCGCGTCTGCGCCGTCTGCGCGCGCGCCTTCCGGGACCATCCGCATGCACAGGTGCCCACTAGCTACACTCACATGCACGAGGAGGAGCTGTCCCCCAGCCTCGTGCGCGTCTGCGCCGTCTGCGCGCGCGCCTTCCGGGACCATCCGCATGCACAGGTGCCCACTAGCTACACTCACATGCACGAGGAGGAGCTGTCCCCCAGCCTCGTGCGCGTCTGCGCCGTCTGCGCGCGCGCCTTCCGGGACCATCCGCATGCACAGGTGCCCACTAGCTACACTCACATGCACGAGGAGGAGCTGTCCCCCAGCCTCGTGCGCGTCTGCGCCGTCTGCGCGCGCGCCTTCCGGGACCATCCGCATGCACAGGTGCCCACTAGCTACACTCACATGCACGAGGAGGAGCTGTCCCCCAGCCTCGTGCGCGTCTGCGCCGTCTGCGCGCGCGCCTTCCGGGACCATCCGCATGCACAGGTGCCCACTAGCTACACTCACATGCACGAGGAGGAGCTGTCCCCCAGCCTCGTGCGCGTCTGCGCCGTCTGCGCGCGCGCCTTCCGGGACCATCCGCATGCACAGGTGCCCACTAGCTACACTCACATGCACGAGGAGGAGCTGTCCCCCAGCCTCGTGCGCGTCTGCGCCGTCTGCGCGCGCGCCTTCCGGGACCATCCGCATGCACAGGAGCATGCATCGAAGTCCACCGAATGTATCGAGGCGTTTGCAAACGAACTGAAAGAGGAAGCGGAAGAGGTGACTGTCCAGCTGTCGCCCACTAGTGGACTCGTCAGACATACTGTGCAGATTGTTGAATCCCCAAAACTGTCGATGCCGATCAAGCGCCAGGTGTCTCCAGAGGTGGGTGAGCCGCTGTTGTCACAGCTGGCGGACGAGGCGAGAGCTCTCATTAGAGTGGTCGAAATAGAGAAGGCATTCAGATGCGAGTATTGTGAAGACGTTTTCTACTTGGAGAGCGGCCTGAACGCGCACCGCGCGATACACAAGGGCGTAAAGAACCCCTTCACCTGCCATATATGCAAAGTCAGCTTCGCGACTTACTCCAgATGTACGACCCACAAGACGACCCACGGCTTCTACAAGCGCTCGCTGGCCGACACCAAGAAGCAGGCGGGCGCGCCCACGCGCATCCTCGGCTACGGGGACTTCCCCGTCGTCAAGCACTTCCTGTGCGAGGACTGCGGCCGTTCCTATTTACACTGGACGTACCTACAAGTGCACAGACGTATGAAGCACGCGAACGAAAACTTTTTATACAAGTGTAACCAGTGCGACTTGACCTTCCCGAATAGTTGGAGTCTAGCCTACCACCGTAAGAAGATCCACGGCAAGACAGGACCTGATGACCCTGGCTCCACCAGCAAGATCATGAGGGATGATTACAGGATACCATGCCGCGATTGCGACGAAGTTCTGCCAAACAAAACTGCACTCTATAAGCACAGGAAGAAGGAGCACAGTGACGGAGCAGCGCGCGTTAAGAAACAGGGCGAGGACAGCGGGACGGGTGGCGCGTGTTCACGCTGTCACGCTACCTTCACGCACGCGTCGGACTTGCATAAACATGTCAAAGAAGTTCACAAACAAGAAACAGAGGCATCGTGCACTTCGTGCCTAACTTTAGACTACCGTGTGCCGCCGTCCCAGCCGCTGGGCAACCCGGCCCAGGCTGGGCAGGCCCGCCGCCCACACTTGTGCCCAGTGTGTGGGCATGCCTTCAGGACGTTATCTATGAGGAACGAACATCTGCGGGTCCACACTGGAGAGAGGCCGTTTCCTTGTGATGTCTGTGGTGTTGCGTTTAGAAGGTCTACGGCCATGCGTAATCACCGCCTGATCCACACGGGGGTCCGTGCGTGGGCATGCGGCCGCTGCCCGAAGCGGTTCCGGATCCGGTCGGATCTGCGCACGCATCTCAGGCTTAAACATCCTGCCACCATACTTGTCATAGAAATGGAGGGCATGAACCCGACTTCAGATGAGGTGATGAAGACCCTCGAGTTACACAACGTGCCGCACGACAAGCTCATTGAGGTCACCAAGATGTCTTTCGCAAAGGGTACAGCGAGTGTGATCCCGTGCAGCGCCCgcgcgctggcggcgctggGCAGCGTGGCGCGGGACAGCGTGGCCTGCGGGAAGCCCGCCCCGCCCCGGATGTTGGAAGACTTCCAACCAGCTCGGCGCGGCCGCGGCATCGCCAAGAACCCGCGCCGGGCCAAGATACTGCATGCGCCGCATACGCCGCATACGCAGCATACCCCGCATACACCGCATACGCAACATACGCAGCATGGTGCCATGCCGCATGCATCGCACTCGGCAGGATATCCTATCGCCGAGTTATCGGACTTAAATGTGCAACTTCTACTTCGCGATGGAGTCCTAGTCAACGGCAACCAGATGGTGCAACTACAACTGGACGACCCCATGTTGTTGCAGTGA
- Protein Sequence
- MTEAQPPLILCMENAAGEDVALKIEPDDNFQTFLDKAKSLLGFDVDLNSITRNQPVSLADNVYQFLITAEQNLQQDELAQNFDQMLDPNDGANDLVYILDDGTQIRASQIHFDNDDPLIDLTAEKIPFVKYADDVTDDLDVENVNIQETKKINIVESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANTAKTYATLNPVTARNKSPKSLIKDNFKNYDESYQRSDNLSYTREDILNMFKDSPMTSLPYDQGYGERRHVRKTDPSRLVHKNWNKPISYVDIDGTLIGESESQICFICGKHVDNSVDKLYLFDNEDQRLHRCSPQKKMSTQLKIICECCLNENFKPCRMKSANQFLNPDEFLVIRNNQQYIFQKIKNFSFTHLGKAKEIINKIESKVTDKEEFVKVEIGSDGEIITKPIDNDPRSDDVIIVKDEKKDGSSSDVEIIEPEPEIDNIIDNLEEADEEVKEFLGKYQCDSSEVTELKCRFCEKIFAELTEVTEHSETHKHELEDGEVYPCPLCNYGYANLKWLKGHLKAAHEKSETSNKEDDQIKEEDKGDSQTSPKVSSPIAKRTRSSSKKDGDRKDEKPSDEIKSDLNPEEAEPPVIKTEVKQECVDSSEDEIWIVQTADAEATQELQKLIDAAKVTGEGQEESTKTHKCFNCSQIFPSAEGLSNHRCRRRGRKRKSKDLVNLICIPTEEDFLKRAQGRPRQIDTSTDNDLLVLRPRKRRSREPTSNPQVVTCHNCNESFTSKVRLKFHMQFHDTTSLLAADGRYTCSECDGAIFSTETELFDHVHFQHDKQKQWQCPVDGCGKTFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELSPSLVRVCAVCARAFRDHPHAQVPTSYTHMHEEELSPSLVRVCAVCARAFRDHPHAQVPTSYTHMHEEELSPSLVRVCAVCARAFRDHPHAQVPTSYTHMHEEELSPSLVRVCAVCARAFRDHPHAQVPTSYTHMHEEELSPSLVRVCAVCARAFRDHPHAQVPTSYTHMHEEELSPSLVRVCAVCARAFRDHPHAQVPTSYTHMHEEELSPSLVRVCAVCARAFRDHPHAQVPTSYTHMHEEELSPSLVRVCAVCARAFRDHPHAQVPTSYTHMHEEELSPSLVRVCAVCARAFRDHPHAQVPTSYTHMHEEELSPSLVRVCAVCARAFRDHPHAQVPTSYTHMHEEELSPSLVRVCAVCARAFRDHPHAQVPTSYTHMHEEELSPSLVRVCAVCARAFRDHPHAQVPTSYTHMHEEELSPSLVRVCAVCARAFRDHPHAQEHASKSTECIEAFANELKEEAEEVTVQLSPTSGLVRHTVQIVESPKLSMPIKRQVSPEVGEPLLSQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNAHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADTKKQAGAPTRILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCDLTFPNSWSLAYHRKKIHGKTGPDDPGSTSKIMRDDYRIPCRDCDEVLPNKTALYKHRKKEHSDGAARVKKQGEDSGTGGACSRCHATFTHASDLHKHVKEVHKQETEASCTSCLTLDYRVPPSQPLGNPAQAGQARRPHLCPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWACGRCPKRFRIRSDLRTHLRLKHPATILVIEMEGMNPTSDEVMKTLELHNVPHDKLIEVTKMSFAKGTASVIPCSARALAALGSVARDSVACGKPAPPRMLEDFQPARRGRGIAKNPRRAKILHAPHTPHTQHTPHTPHTQHTQHGAMPHASHSAGYPIAELSDLNVQLLLRDGVLVNGNQMVQLQLDDPMLLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -