Basic Information

Insect: Trichoplusia ni
Gene Symbol: -
Assembly: GCA_003590095.1
Location: NC:4482582-4496558[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00056 0.029 14.6 0.9 1 23 402 424 402 424 0.97

2 10 0.55 28 5.2 1.7 1 23 431 454 431 454 0.95

3 10 0.16 8.3 6.8 0.6 2 23 459 480 458 480 0.96

4 10 0.001 0.051 13.8 4.1 1 23 485 508 485 508 0.97

5 10 0.00056 0.029 14.6 0.2 1 23 512 535 512 535 0.97

6 10 0.002 0.1 12.8 0.1 2 23 618 640 617 640 0.96

7 10 0.00059 0.03 14.5 0.3 1 20 655 674 655 677 0.92

8 10 1e-06 5.1e-05 23.2 2.6 1 23 683 705 683 705 0.99

9 10 0.0004 0.021 15.0 4.4 1 23 712 734 712 734 0.96

10 10 0.0001 0.0051 16.9 0.6 1 22 740 761 740 763 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00056	0.029	14.6	0.9	1	23	402	424	402	424	0.97
2	10	0.55	28	5.2	1.7	1	23	431	454	431	454	0.95
3	10	0.16	8.3	6.8	0.6	2	23	459	480	458	480	0.96
4	10	0.001	0.051	13.8	4.1	1	23	485	508	485	508	0.97
5	10	0.00056	0.029	14.6	0.2	1	23	512	535	512	535	0.97
6	10	0.002	0.1	12.8	0.1	2	23	618	640	617	640	0.96
7	10	0.00059	0.03	14.5	0.3	1	20	655	674	655	677	0.92
8	10	1e-06	5.1e-05	23.2	2.6	1	23	683	705	683	705	0.99
9	10	0.0004	0.021	15.0	4.4	1	23	712	734	712	734	0.96
10	10	0.0001	0.0051	16.9	0.6	1	22	740	761	740	763	0.90

Sequence Information

Coding Sequence: atggttaaGTTAGTTAAATGCGCTGTCGAGACGTGTACaaataatacgaataaaaaagcTACCGAATGTCCCTGGCTTTCTTTTCACAAGCCCCCAAGAAACAAGAATATACAGAAATGTTGGTTTAATGCTATCGGCAAACAAAATATGGATCTAACTGACTTAAGAATATGCAGTGATCACTTTAGAGATGAAGACTTTCAATtacaaatcaataataaatacagGAAACGATTAAAACCTGAAGCCATACCAGTTATCAATCataagtataACGAAGATGCTTTTATTAGTGACAGGCTGTGCAGGATATGTCTGACCATCGATCGAAAAATGTATACCATGAAAGGATCAGTTATTGGCGAGATGTATATGACCTTGAGAGGGTGTTTGGTCTCAAATCTGGAAGATACTTTACCGATGCAGTTGTGTTGGGTATGCGCCGCTAGACTTACTGCCGCGACCAAGCTTAGAGAACGAGCTATGTTGACAGATCAGATCTTGAAAGACTACCTTATGAAGACTCCAAGAATTAAATATCGTGATTTAACAATGATTTATGAACAACTAGATTCCGATGTAGTGAAATCGAAATTCGTAATCGAGAATTCATCGGACAGCATCGATGGAAAGGACAGTGTTGCCGGTACAATAAATTCAGACTGGCAGAATGAATTCAAACcgaaaactgaaaaaataacgTGTCAAAACTTTGATATAACTCAAGTAACAGTTAAAAAAGAATTAGATACAACACTAGCTTTCGATGATCATGACCCTAGTTCGATGAAAACCGAAATCGATATGACATTGACAATTTGTAATGACATTACTAGTGTTGTGCAAGAAGATATCAATATTAACAGCGATCTGTTGAAAAACGATGTCGATGTAACAACAGACATCACGAGCAATAGTGATGGGAATGAAGTCGATGAAATCGATACgaaaaatcgattttattttgaagagaTCGATTTTAGAGAAAACGAtgtatctttaataaataatgaaaatactgAAGCAATTGAAAACGGAAAACGGCAGGTTAAAATATTAACTGCAAAACTTGAAAGTAAAAAGCAAACAAGGCATACTAAACAGATAGATGAGAATATATTCACAATAAGACACCTGTCTGAGGAGGAGGAGATCCAGGCAGTTGTGAACAGGCAGTACAGCGAGAGGTATCTCAAGTCACCCTACCAGTGTACGCAGTGCTATAAGGGGTTCCCGAGCGAGGAGTCTTATGAGAGACACGCCACGAAACATAGTGAGAAAATGGGGCCACACATATGCAAGATATGCAAAATCCGATCGGGAACGAAGACTAAAGCTAGACTTCACATGGCGAGACAACATACTGAAGAAATTACTTGTAAACTATGTTCCTTTGTAACAAGATCTAGAAATCTCGTGATCGGTCATATGAAATACCATGCAGGTGATAAGTATAAATGCCAACATTGTGATCAGGAATTTGAgaAACAAACGacttatttaaatcatttacgATTGCGACATATGTCTCATTATGTGTGCGATCTATGTGGCTACACGTTCGTCAATCTACAAGGAGTCAGAACTCACAAAAAGATTATACATCGGTTCAATAAAGATCTGGTGATGGAGGGTCCGTACTGCGAAGTGTGCGAGGTTCGGTTCCTGTCCGAACAGGCGTACGACACTCACCTCAACCTGTCCTCCAAGCATGTCGCCGAGGACAACCCAAACCGTATGTCCAACGATCGCAGTAACCATCGTAAACTAGACAACTTTACTCGGAAACCGGTTCGTCGAGAAGCAATCCGCCGGCGAGACAGGAACACGGGTCCTCAGAACACGAGCGTGTCTTGTGAACAGTGCGGTGAGGTATTCCCAAATCTCCGCGGCTATGTCGCGCACTTCAGGAAGTCACATCCAGGGAAGCAGAGGACTAAGTACTCGACGCAGACTACTCCGTACTTATGCGAGCTTTGTGGGAAGATATTCGCGaaCTACACAACCCTCCGTTATCACATGTGGATACACACTGGTCAGAAACAATACCAGTGTGATCATTGTAAAAAAACCTTCAGCGTGAAGGGCAACCTCTCCGGACACATGCGATTGCACGACAAATCGCGACGGTCGTACGACTGTCGCATATGCGGGAAACAGTTCACTTCGTCTTGTAATAGGACGAGGCATATGTTTCTGCACACGGGCCTGAAGCCGTTCCGCTGCTCGGCGTGCGACAAGTGCTTCGTGACGGCGGGCGAGCTGAAGGCGCACGTCGACTTCGTGCATCTGAAGAAGCCCAGGCCCAAGCGGCTGCGGGCCAGAAACAGGAAGCCTGACGGCCAGGCCGgatattaa
Protein Sequence: MVKLVKCAVETCTNNTNKKATECPWLSFHKPPRNKNIQKCWFNAIGKQNMDLTDLRICSDHFRDEDFQLQINNKYRKRLKPEAIPVINHKYNEDAFISDRLCRICLTIDRKMYTMKGSVIGEMYMTLRGCLVSNLEDTLPMQLCWVCAARLTAATKLRERAMLTDQILKDYLMKTPRIKYRDLTMIYEQLDSDVVKSKFVIENSSDSIDGKDSVAGTINSDWQNEFKPKTEKITCQNFDITQVTVKKELDTTLAFDDHDPSSMKTEIDMTLTICNDITSVVQEDININSDLLKNDVDVTTDITSNSDGNEVDEIDTKNRFYFEEIDFRENDVSLINNENTEAIENGKRQVKILTAKLESKKQTRHTKQIDENIFTIRHLSEEEEIQAVVNRQYSERYLKSPYQCTQCYKGFPSEESYERHATKHSEKMGPHICKICKIRSGTKTKARLHMARQHTEEITCKLCSFVTRSRNLVIGHMKYHAGDKYKCQHCDQEFEKQTTYLNHLRLRHMSHYVCDLCGYTFVNLQGVRTHKKIIHRFNKDLVMEGPYCEVCEVRFLSEQAYDTHLNLSSKHVAEDNPNRMSNDRSNHRKLDNFTRKPVRREAIRRRDRNTGPQNTSVSCEQCGEVFPNLRGYVAHFRKSHPGKQRTKYSTQTTPYLCELCGKIFANYTTLRYHMWIHTGQKQYQCDHCKKTFSVKGNLSGHMRLHDKSRRSYDCRICGKQFTSSCNRTRHMFLHTGLKPFRCSACDKCFVTAGELKAHVDFVHLKKPRPKRLRARNRKPDGQAGY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01487778;
90% Identity: iTF_01487778;
80% Identity: iTF_01487778;