Basic Information

Insect: Trichoplusia ni
Gene Symbol: -
Assembly: GCA_003590095.1
Location: NC:6203304-6205662[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.6 84 3.7 0.4 2 23 205 227 204 227 0.85

2 9 0.053 2.7 8.4 1.5 3 23 264 284 262 284 0.96

3 9 0.046 2.3 8.6 0.0 2 20 291 309 290 311 0.92

4 9 6.9e-06 0.00035 20.6 0.7 2 23 335 356 334 356 0.96

5 9 9.7e-07 5e-05 23.3 1.0 1 23 364 386 364 386 0.98

6 9 0.00086 0.044 14.0 1.4 1 23 392 414 392 414 0.97

7 9 9.6e-06 0.00049 20.1 2.1 1 23 420 442 420 442 0.97

8 9 0.00046 0.023 14.9 2.2 1 23 448 470 448 470 0.98

9 9 2.5e-07 1.3e-05 25.1 3.9 1 23 476 499 476 499 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.6	84	3.7	0.4	2	23	205	227	204	227	0.85
2	9	0.053	2.7	8.4	1.5	3	23	264	284	262	284	0.96
3	9	0.046	2.3	8.6	0.0	2	20	291	309	290	311	0.92
4	9	6.9e-06	0.00035	20.6	0.7	2	23	335	356	334	356	0.96
5	9	9.7e-07	5e-05	23.3	1.0	1	23	364	386	364	386	0.98
6	9	0.00086	0.044	14.0	1.4	1	23	392	414	392	414	0.97
7	9	9.6e-06	0.00049	20.1	2.1	1	23	420	442	420	442	0.97
8	9	0.00046	0.023	14.9	2.2	1	23	448	470	448	470	0.98
9	9	2.5e-07	1.3e-05	25.1	3.9	1	23	476	499	476	499	0.98

Sequence Information

Coding Sequence: ATGGAAAACCTGTACTGCAGATTCTGCGCCGAGCCCAAGAGCTCCGAAAAGCTTTTGAACCTTCAGAACGACGCAGAAAAACacgatgaaataatattaaaactcgCATTTGTGAATGCAGTGTATGTCAACGTTACGAACAGTGATATGTTGCCGAAAACGATATGTTTTATATGTTACAACAGTCTAAACAAGGCTTACGAGTTCCTCGACGGTGTGAAGAGAGCGCAAGACGTTCTATCTAACATTTTCACAGCAATAAATGAAACTAAAGACGACTTATCGGACGACGATCGAATACCAGGTTTTGACGATTTTCTTGGTAACGACGACTCCGCCGCTGTTAAAACCGAAGGGAACACGTCTAGCAATCACATTGGACAGCACATAGTCGACGTAAGAGTACAAGTGAAGCAGGAATTGAAAGAAGAAGCGTCAGACGGCGAAGATCAATCAAATTACGTTGACGCCTTAAATGTACATGATATTTTGAATGCTGCGATATGTAATGCCTCGTTTACGTCAAACGTGTACGAACCAGCGACGATACACGCTAAGGAGATCGGAGATTTGAGTAAGAAGGTCGTAAGATCCTGGAAAGAGTATCCATGGGTCTGTGGATACTGTAACATAgagtttttaaacattgataTGTTAAGGTCTCACTGTAAAGTTGTACACGGGAAGTGTTCTGCTTTCATGTGTATTGATTGCAAAGCGGGCAGGAACGAAGACTTCACTAGTTTTATGAAACATGTTAGGAAACATAGAAAAATGTTGAGaaaCCACTGCTACTACTGTGatttaatattagataaaacGGACAGCTTAACTAACCACATAAAACAACACTTTCAAAAATCACAATTACCGTGTCCACTCTGCGGTGAGATATTAGAAAACGAAGAATCCTTAAAGATCCACGTCCAAGACTTCAATACGATAAAACAGAAACGAAGACCGAGAAGAAAACCCGGTACACCCATCACCGTAGAAGATTTAACCTGTGAACTATGTAAAAAGGTCTATAAGAACCCAAATAGTCTACGTGACCATATGAAGTTACACACGATTGACCGTAAAAGAAACTACACTTGTGATCGTTGCGGCAAAATGTTCTACAACAAAGGTACGCTCACATCACATATCTTATCACATGACAAGAACCGTCCCCACGTTTGTAGAATATGTAATAAGTCATTCTTATACCCAAATATGTTACGAAGGCATGTAGAAATGCATTCTGGGATTAAACCGTATTCTTGTGAGCAATGCGGACGGTGTTTTAGGCTGCAATACCAACTGAATGCCCATAAGATCATACATACGGACTCCATGCCATATGTATGCTCATATTGCAATAAAGCTTTTAGATTCAAACAGATTTTGAAGAACCATGAGAGGCAACACACCGGTGCTAAACCATATTCCTGTCAGCACTGCGGTATGGAGTTCACGAATTGGTCAAATTACAACAAACATATGAAACGGAGACACAATACGGACACTTCAAAGAAAAAGATTACACCAGAAGGAGTGTTTCCAGTTAATCCGGAGACAGGACAGATCATGCAGGTCCAGGATCCAGCGGGCACTGAGGAGTGGAAGACCAAGATCATGATACCTGGGAAAAGAGGGAAAAAGAAAGTTATTAAGCAAGAGAATATTTAA
Protein Sequence: MENLYCRFCAEPKSSEKLLNLQNDAEKHDEIILKLAFVNAVYVNVTNSDMLPKTICFICYNSLNKAYEFLDGVKRAQDVLSNIFTAINETKDDLSDDDRIPGFDDFLGNDDSAAVKTEGNTSSNHIGQHIVDVRVQVKQELKEEASDGEDQSNYVDALNVHDILNAAICNASFTSNVYEPATIHAKEIGDLSKKVVRSWKEYPWVCGYCNIEFLNIDMLRSHCKVVHGKCSAFMCIDCKAGRNEDFTSFMKHVRKHRKMLRNHCYYCDLILDKTDSLTNHIKQHFQKSQLPCPLCGEILENEESLKIHVQDFNTIKQKRRPRRKPGTPITVEDLTCELCKKVYKNPNSLRDHMKLHTIDRKRNYTCDRCGKMFYNKGTLTSHILSHDKNRPHVCRICNKSFLYPNMLRRHVEMHSGIKPYSCEQCGRCFRLQYQLNAHKIIHTDSMPYVCSYCNKAFRFKQILKNHERQHTGAKPYSCQHCGMEFTNWSNYNKHMKRRHNTDTSKKKITPEGVFPVNPETGQIMQVQDPAGTEEWKTKIMIPGKRGKKKVIKQENI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00040192;
90% Identity: iTF_01487970; iTF_01221892; iTF_00185575; iTF_00327307; iTF_00186558;
80% Identity: -