Basic Information

Insect: Trichoplusia ni
Gene Symbol: -
Assembly: GCA_003590095.1
Location: NC:4193632-4195630[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00048 0.024 14.8 0.2 3 23 233 254 232 254 0.96

2 10 7.2 3.7e+02 1.6 0.4 2 23 263 283 263 283 0.85

3 10 0.025 1.3 9.4 0.5 2 23 299 319 298 319 0.96

4 10 0.0023 0.12 12.6 2.0 2 23 331 352 330 352 0.96

5 10 0.012 0.59 10.5 0.6 2 23 380 400 379 400 0.96

6 10 2.8e-07 1.4e-05 25.0 2.3 1 23 407 429 407 429 0.98

7 10 0.031 1.6 9.1 1.7 1 23 435 457 435 457 0.98

8 10 2.8e-07 1.5e-05 25.0 1.1 1 23 463 485 463 485 0.99

9 10 4.4e-06 0.00022 21.2 1.1 1 23 491 514 491 514 0.96

10 10 0.00012 0.006 16.7 1.8 1 23 520 543 520 543 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00048	0.024	14.8	0.2	3	23	233	254	232	254	0.96
2	10	7.2	3.7e+02	1.6	0.4	2	23	263	283	263	283	0.85
3	10	0.025	1.3	9.4	0.5	2	23	299	319	298	319	0.96
4	10	0.0023	0.12	12.6	2.0	2	23	331	352	330	352	0.96
5	10	0.012	0.59	10.5	0.6	2	23	380	400	379	400	0.96
6	10	2.8e-07	1.4e-05	25.0	2.3	1	23	407	429	407	429	0.98
7	10	0.031	1.6	9.1	1.7	1	23	435	457	435	457	0.98
8	10	2.8e-07	1.5e-05	25.0	1.1	1	23	463	485	463	485	0.99
9	10	4.4e-06	0.00022	21.2	1.1	1	23	491	514	491	514	0.96
10	10	0.00012	0.006	16.7	1.8	1	23	520	543	520	543	0.96

Sequence Information

Coding Sequence: ATGCGGACGCGTAATAAGTTACGATCCAGGAACTCAACAGTATCTCAAGAAGCAGTAATAATTGACCAAAGAAACTCGCCGGGAAAATGTAGAGTGTGCTTAGATGATGGAGATATACCAATTTTCGGTTCAAAAGATATATCTAATGATGTAGCAGAGTTCGGAAAGATCAAAATCAATGCAAATGATAACTTCCCAAAGTACTTATGCGAAGCTTGTTATACTTTACTCGAAGCTGCAATCTTGTTTAGGAAAACCGCGAAACAAGCCAATGCATTTCTAAAGAAAAATCCCTGGAAGATCCCATCGTCGGCAGCGTCTGATGATTctaattatataaatgaaaacGAACCTGAAATAAAGCGAGAGTATCTTGAGTTGGATAACACCTCTGAATCTGAACTTGACGACTTTGATAAACTAAGGCTTAAAATTGAGTCGGAAGATGAAACCATTGATTACCTTGCTCTAGCTAACAATCATATGGATATGTCAGTTAAGTCAGAGGATGGTAGTGTAGGATACCGGTCTGCTTCTGAAGCAGATACtcaagaaacaaattatatggAGCACTCTCAATTAGAGGACATTGATGAATCAAAAAATGATGAAGATGAAACTGTTGCTGATCCAGATAGTGAAATGATTATGATTATAGTTTCtgacaaagataaacaaaatcagATTACACCAATATGTGAAAAATGCAACACTAGTTTTGATAACATAGATGACCTTTTGCAGCACATTGAGAAAACTCATCCGAAACCGGGCCCAGATGAGAGAGAATGTGAAATTTGTCGTAATGTGGTCAAAAGGAATTTATATAAAGTACATTTAAAAGAGCACAGAGAAAAGTATCAAGagaaacatattaaaaagtatgGTAAAGTTGAATGTGAAATATGCAATAAGAAAATTAGTAAAGCATATTATAAATACCATATTAAAATGCATGGAACTGCTGAAGAACAAGCTGAAAGGACTATGGAATGTACAATATGTAAAAAATCCTTTGGTGCACACTACTTTAATGACCATATGAAAAGGGTACATGATAAGAAAATGAAGCACACAAAACAATCATCTCAGAAACCAGTGCCCAAAGAGGTTTCACctaagaatgtaaaaaaaactaaatgtcCAGTGTGtgacaaaaaagtaaaagaaagtgaatataaacaacatttagCAAAACACGGCGGTCCACTGCGACGTTACATTTGTGACAAATGTGGAAAAGTATTCAAACATCCGTCTGCATTCCGAACTCATTACATGACACATGGTACTGAACTGAAATACAAATGCCAGTTTTGTCCCTACAGAGGCTTGCATCAAGGCCTCCTTAAGATCCATGTTCGGACCCACACAGGGGACTACAACTACAAATGTACGGAGTGTCCCGCAAAGTTCATAACAAAGAGTAACTTGTCTAAACATATTCAACGGCACAAGGGACAATGTAACTACAAGTGTGAAATTTGTAATAAAGGATTTTACTCgaaacgtgatctaaacaaacACAACAATATAGTACATTTGAAGTTACGGAACCATGTTTGCGAGTCCTGCGGAAAAGTTTTTGGACACAGAGATAATATGTTGAGTCACCAACTGAAAGTTCATAAACGTGAAAAGATTATTACGAAAGGCAGAATGCCTTCATACCTTAAGACGGAAGAACAGTTGTAA
Protein Sequence: MRTRNKLRSRNSTVSQEAVIIDQRNSPGKCRVCLDDGDIPIFGSKDISNDVAEFGKIKINANDNFPKYLCEACYTLLEAAILFRKTAKQANAFLKKNPWKIPSSAASDDSNYINENEPEIKREYLELDNTSESELDDFDKLRLKIESEDETIDYLALANNHMDMSVKSEDGSVGYRSASEADTQETNYMEHSQLEDIDESKNDEDETVADPDSEMIMIIVSDKDKQNQITPICEKCNTSFDNIDDLLQHIEKTHPKPGPDERECEICRNVVKRNLYKVHLKEHREKYQEKHIKKYGKVECEICNKKISKAYYKYHIKMHGTAEEQAERTMECTICKKSFGAHYFNDHMKRVHDKKMKHTKQSSQKPVPKEVSPKNVKKTKCPVCDKKVKESEYKQHLAKHGGPLRRYICDKCGKVFKHPSAFRTHYMTHGTELKYKCQFCPYRGLHQGLLKIHVRTHTGDYNYKCTECPAKFITKSNLSKHIQRHKGQCNYKCEICNKGFYSKRDLNKHNNIVHLKLRNHVCESCGKVFGHRDNMLSHQLKVHKREKIITKGRMPSYLKTEEQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01487962;
90% Identity: iTF_01487962;
80% Identity: -