Tni013590.1
Basic Information
- Insect
- Trichoplusia ni
- Gene Symbol
- -
- Assembly
- GCA_003590095.1
- Location
- NC:391267-394511[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.3 67 4.0 4.1 1 23 171 194 171 194 0.97 2 19 1.2e-05 0.00061 19.9 1.2 2 23 200 221 199 221 0.97 3 19 0.051 2.6 8.4 0.4 2 23 225 245 224 245 0.95 4 19 0.0011 0.055 13.7 1.6 1 23 250 273 250 273 0.97 5 19 0.0068 0.35 11.2 1.9 2 19 280 297 279 300 0.93 6 19 0.003 0.15 12.3 4.9 1 23 360 383 360 383 0.97 7 19 0.41 21 5.6 0.2 1 14 387 400 387 407 0.79 8 19 0.023 1.2 9.5 0.1 1 23 416 439 416 439 0.95 9 19 0.00071 0.036 14.3 0.9 1 23 443 466 443 466 0.91 10 19 4.9e-05 0.0025 17.9 0.1 2 23 479 500 478 500 0.97 11 19 0.0023 0.12 12.6 1.2 1 23 506 528 506 528 0.98 12 19 0.046 2.4 8.6 0.2 2 23 534 554 534 554 0.96 13 19 6e-05 0.0031 17.6 0.6 2 23 560 581 560 581 0.97 14 19 0.7 36 4.8 0.1 2 23 586 606 585 606 0.91 15 19 6.3 3.2e+02 1.8 3.2 2 23 625 646 624 647 0.93 16 19 2.3e-05 0.0012 19.0 3.1 1 23 653 675 653 675 0.98 17 19 0.00064 0.033 14.4 0.9 2 23 682 703 681 703 0.96 18 19 0.075 3.9 7.9 0.8 1 23 709 732 709 732 0.93 19 19 0.034 1.7 9.0 1.1 3 23 739 760 738 760 0.95
Sequence Information
- Coding Sequence
- ATGAACTTTCAGGTTGAAAACTTCGCAATGGAtggttttaaagaaaaattgaGGAATATTCTTCATAGCAATCAGTTTTGCGGGATTTGCATTGAACCGGAAGAGCATATAAGCACCCTTGATGATAGTTTCCAAATAATTGTAAACGGACAATGTTACAGCAAAACATTGAAAGAAATAGTTGAAgtagtttttataaatgcTGAAAACATACTAACAAGCTCTCAGATATGCAACAGTTGTTCAGAAAAACTAATCCAGTCATACATATTTATCAAGAATGCGGAAGATTCATCtgcaatcataaaaaaatatataaatgatttatttaataaatctgatGATATTTTTGGTCATTTATGTAATTCAAGCTTGGAAAGCTCAAATGTTGTTAttgtattagaaaataatattcaaggaTACAATGATCAAGTGAAGAACAAAAAGTCTACAATAAAAGAggaattagaaaatttaaaaaaggatgcATCAAAACCAAAGATCTCTAAATTCAAATGTCTGAACTGCAATGTAAAACTACCCTCTAACAGAACTTTTATGTTACACAGACAAAAATGtcacaaaaaaggtttattgcAATGTGATGAATgtttaaagacatttaaaaacaagcaGTACTTAAATGCACATTACAAAGtacattctaaaataaaatgcaaagttTGTGATGAACTAATAAAGAGTACTGAATTAACAAATCATATGCAAACTCATACAGATTCCATACACAAGTGTTTACAATGCAATGAAGAATTCTATTCTAAAAATGCGTTAGAAATTCATGAAAGAATGCGCCATGCTAAAACTGAAAGTAACCAATGTTTGATGTGTTTTAAGAGTTTTATCACACAAGACGAGTTAAAGCTACATAATTGCAAGTACACCTGTCCGGAATGTTCTGAACATCCTTGTATGCACTACAAGTATTTAATGTTCTATAGAGAACAAATGCTTAAGAATGCTTCGAGAGCAAAGTGTTTGGACTGTGACTATTTATGTAGAAATAAGGAGGTTTATTTAGGACATGTGAATCAGGAACATTTAAATCACCATCCATATTCTTGTGATAAATGTGGACGGCAGTTTTACTCGAAATTCGTGTTAAGAACCCATCTACATAGATTTCATAGAGATACTTTTGTTTGTCAGTACTGTGACACTGAATACagtaatattagtatttatgaGGATCATGTTAAGTTTTGTGGGACTGTCAATAGGAATTTTGCTTGTAAAGAATGTCCTGCATCTTTTGAAGTCGTAGATAAACTGCTAGAGCATGAAAAACGCAGACACAGCAATAATTTTCCATGCGATCagtgtaataaaaagttttctacAGCATCTAAAAGAAAAGACCATGTAGACAATGTTCACAGTggcattcaaattaaaaataaagttctgaACGTTGAATGTGTTGTGTGCCAGAAGATGTTCGATTCAAAAGGAGACTTGGTACTGCATATGAAATCACACGGCCCAAACACTAGGTATCCGTGCAGGATTTGTAATACTGAATATGAGACTTTGAGACAGTTTCGCGCGCATAATAGAAAACATGGTGGTCCATTCGCAACTTGCGAGgtttgtgggaaagagatgagAGCGATTCTTCTAAAGAAACATATGGGTACCCACAGAGACAGTGTTGAGACGTGTGAGACCTGCGGACGGTCTTTCGCCAACATCACCTTGCTAAAGTACCACCAAAAGGTCCATTTAGAAAGCGTGCCCTGTCCAAAATGCAAGAAGTTGATAAACCCAGCGCGATTACGTAGACATTGGAAAGCACATCTGCTTGAAGAGAATCCTGACTTAAAGGGATCCAAAAAACAAACACCGAAACTAAAATGCGAGCAATGTGACTACATAACATGGAACAATACACTTCTCGAATGCCACATGAACCGCCATCATTTAAAAATCAAGCCGTATGTCTGTCATATATGTAGCAAGGACTTTATTGGGAAACATTTGCTGAAAAAACATATAGAAACGCATCAGTTGGACAAATCCGTGGTCTGTATGGTGTGTTTGAAAAGTTTCGCGAATTCCGCTTGTCTGAAAATGCATTTACGTTTGCATACGGGCGAAAAGCCTTTTACTTGTGAAGTTTGCGGGGATCGATTTAGGTCTTCTAGTATTATGAATGTCCATAAGTTGAAGAAGCATTCGGATAAGAGGAATATTTGTCCGTTATGCTCGAACAAGTTTCATACTGTGAGGGACTTGAGAAGGCACGTGATTAAAGTGCATTGGAAGCAGAAGAATAAACGGTTTGATCCTCGAGAGCTGAAGGGTTTGGATAAAGAGCACTATCATTTGTTTCATGATGGAAGGAGAGTCAAAGTCGCGGAGGAAGATGTTGACTTTTATATGCCATGTTGA
- Protein Sequence
- MNFQVENFAMDGFKEKLRNILHSNQFCGICIEPEEHISTLDDSFQIIVNGQCYSKTLKEIVEVVFINAENILTSSQICNSCSEKLIQSYIFIKNAEDSSAIIKKYINDLFNKSDDIFGHLCNSSLESSNVVIVLENNIQGYNDQVKNKKSTIKEELENLKKDASKPKISKFKCLNCNVKLPSNRTFMLHRQKCHKKGLLQCDECLKTFKNKQYLNAHYKVHSKIKCKVCDELIKSTELTNHMQTHTDSIHKCLQCNEEFYSKNALEIHERMRHAKTESNQCLMCFKSFITQDELKLHNCKYTCPECSEHPCMHYKYLMFYREQMLKNASRAKCLDCDYLCRNKEVYLGHVNQEHLNHHPYSCDKCGRQFYSKFVLRTHLHRFHRDTFVCQYCDTEYSNISIYEDHVKFCGTVNRNFACKECPASFEVVDKLLEHEKRRHSNNFPCDQCNKKFSTASKRKDHVDNVHSGIQIKNKVLNVECVVCQKMFDSKGDLVLHMKSHGPNTRYPCRICNTEYETLRQFRAHNRKHGGPFATCEVCGKEMRAILLKKHMGTHRDSVETCETCGRSFANITLLKYHQKVHLESVPCPKCKKLINPARLRRHWKAHLLEENPDLKGSKKQTPKLKCEQCDYITWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHQLDKSVVCMVCLKSFANSACLKMHLRLHTGEKPFTCEVCGDRFRSSSIMNVHKLKKHSDKRNICPLCSNKFHTVRDLRRHVIKVHWKQKNKRFDPRELKGLDKEHYHLFHDGRRVKVAEEDVDFYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -