Tni011235.1
Basic Information
- Insect
- Trichoplusia ni
- Gene Symbol
- -
- Assembly
- GCA_003590095.1
- Location
- NC:7798102-7814050[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4 2e+02 2.5 2.2 1 23 205 227 205 227 0.88 2 13 1.8 90 3.6 2.6 2 23 231 252 230 252 0.90 3 13 2.5e-06 0.00013 22.0 5.6 1 23 257 279 257 279 0.99 4 13 0.0043 0.22 11.8 1.7 1 23 285 307 285 307 0.95 5 13 1e-06 5.3e-05 23.2 0.2 3 23 316 337 315 337 0.97 6 13 2.1e-05 0.0011 19.1 5.0 1 23 343 365 343 365 0.97 7 13 0.00051 0.026 14.7 5.9 1 23 372 394 372 394 0.97 8 13 2.4e-05 0.0013 18.9 1.0 1 23 398 421 398 421 0.97 9 13 0.0011 0.056 13.7 0.8 1 23 425 447 425 447 0.98 10 13 0.00047 0.024 14.8 0.5 1 23 452 475 452 475 0.97 11 13 0.63 32 5.0 2.0 2 23 487 505 486 505 0.90 12 13 4.3e-05 0.0022 18.1 0.9 2 23 511 533 510 533 0.93 13 13 1e-06 5.2e-05 23.2 1.2 1 23 538 561 538 561 0.96
Sequence Information
- Coding Sequence
- atggctGACCtaggaatattaaatttaaatacgcTGTGTCGTTGTTGCCATTCAGACGGGAGCTTTAAGAGTCTCGAAAGTCTCGTTAAGAAAAGAAATGCCGAGGAAACATATGAAACTATGTTAAGAGATACTTTAGGTATAACGATATATATACCACCTCTAGAAGCTAGTTACACTATATGTGAAAAATGCATAACCAAGCTACGAGCGGCCACAAACTTTAAGAAACAGGTTGCACTATGCGAAGAGAAATTTATGGAATATTGTAAAAatgAACAGTTTCTGAATCAGGAATGTAAAGTCGAAATAAAATCGGAACCAAGCATTCAAGAAACAGATAATAATGATGACACACAAATGGAAAATTACAATGAGAATACGTTAGATTTTAAAGAAGAACCAAAAGAGGATGTCGACTATTATTTAGAAGTGGATATGCCAGAAGCTTCCGatGACACAGATGAACAGACAGCTGATTTAGAAAACCAGGAAAATACTATCAAAGAAACTCAAGACAACACGGTagtgaagaaaaatgaaaataaatCACAAGAATATGAAATCGACACGTCATGCATCATAGAAACAGAGTCCGAGAACGGCTTAAAATACTCGTGCAGGGACTGTGGCGGGAATTacacagaaaaacaaatacatcaaCACCTATTCACGAACCATGACACTCTAGAATGCAAAATATGcaagaaaatactaaaaaatgtaaattcatACAAGTGTCATGTGAAGCTACACGGTAATAGGTCATTTAAATGTAACACTTGTGATAAAACTTATCCCACCAAACATGCCTTGAAGCATCATATTAATACACACACGAGGGAAAAGGTTTTCACCTGCGATTAttgcaataaaacttttttaggaAGAACTGttttaagaaaacatattttattccatctcggtttgaataaaaaaaaactctgcgACTTATGCGGGTGGTCTTTCAACGATTCATCGAATTTGAGAAGCCACGTTCGCTCTGTTCATTTGAAATTGAGGCCGTTCGTTTGTAATACGTGCGGAAAAACGTTCAAAGCGAAAAAGCATTTGAAAGACCATCAATTTAAGCACGGTACGGGATCGAAGAGATTCTTTTGTGATAAGTgcgacaaaaaatattcaacttgtACCTCTTTGAAAATCCATAGATTGAAACATGATAATGTATTCAAATGCTCGAAATGTCCTTTGACATTTGAAAGTCAAGCGAGCTTAACAATGCATTTAAAACAGAGCCACAGTAGGTATTACCCTTGCGATGTTTGCAATAATGTTATGTCTTCGCAAAAATCTTTAAATCGCCATAAGAGAAATCATGCGGGTCTAAAGTACCCTTGTGATATCTGCAATGAATTTTTCTCAGAGAAAAGTGTAGTTTCTCGTCATAAAAGAAGGGTACATAATAATGAGAAAAAGGATACAAATGTAAAAACTAAATGTTCGGTTTGTGGGAAGTTGTTCATGAATATTCTGAATCATATGCGGTCGCATAACAACAGGCAGTCCTCTTGTGACTTGTGTGATAAATCTTATCCTGATAATAGTACTTTGAATAGGCACAAGCTACAGAAACATTTCTCAAGGTTGTTCGATTGTGAAATATGCGGGAAAAAGTATATACAgaaagataaattgaaaaaacatcAGAATAAAGTGCATAATTTGAAACTTGAGAGGAATCAAGACAGCTCGGAAACTTCTGGTTGA
- Protein Sequence
- MADLGILNLNTLCRCCHSDGSFKSLESLVKKRNAEETYETMLRDTLGITIYIPPLEASYTICEKCITKLRAATNFKKQVALCEEKFMEYCKNEQFLNQECKVEIKSEPSIQETDNNDDTQMENYNENTLDFKEEPKEDVDYYLEVDMPEASDDTDEQTADLENQENTIKETQDNTVVKKNENKSQEYEIDTSCIIETESENGLKYSCRDCGGNYTEKQIHQHLFTNHDTLECKICKKILKNVNSYKCHVKLHGNRSFKCNTCDKTYPTKHALKHHINTHTREKVFTCDYCNKTFLGRTVLRKHILFHLGLNKKKLCDLCGWSFNDSSNLRSHVRSVHLKLRPFVCNTCGKTFKAKKHLKDHQFKHGTGSKRFFCDKCDKKYSTCTSLKIHRLKHDNVFKCSKCPLTFESQASLTMHLKQSHSRYYPCDVCNNVMSSQKSLNRHKRNHAGLKYPCDICNEFFSEKSVVSRHKRRVHNNEKKDTNVKTKCSVCGKLFMNILNHMRSHNNRQSSCDLCDKSYPDNSTLNRHKLQKHFSRLFDCEICGKKYIQKDKLKKHQNKVHNLKLERNQDSSETSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -