Basic Information

Insect: Trichoplusia ni
Gene Symbol: -
Assembly: GCA_003590095.1
Location: NC:4824945-4829389[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.029 1.5 9.2 0.1 5 23 344 362 343 362 0.96

2 12 0.011 0.54 10.6 0.2 3 23 370 390 368 390 0.94

3 12 0.88 45 4.5 0.3 2 23 398 419 397 419 0.91

4 12 2.4e-07 1.2e-05 25.2 1.0 2 23 425 446 425 446 0.98

5 12 0.0024 0.12 12.6 4.3 1 23 452 474 452 474 0.98

6 12 4.7e-05 0.0024 18.0 0.4 1 20 478 497 478 499 0.94

7 12 5.2e-05 0.0027 17.8 0.1 1 23 532 555 532 555 0.96

8 12 0.027 1.4 9.3 0.1 3 23 564 584 563 584 0.98

9 12 2.3e-05 0.0012 18.9 0.4 1 23 595 617 595 617 0.98

10 12 6.3e-05 0.0032 17.6 4.5 1 23 623 645 623 645 0.98

11 12 0.0023 0.12 12.6 0.3 3 23 653 673 651 673 0.98

12 12 1.6e-05 0.00083 19.4 0.8 1 23 679 702 679 702 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.029	1.5	9.2	0.1	5	23	344	362	343	362	0.96
2	12	0.011	0.54	10.6	0.2	3	23	370	390	368	390	0.94
3	12	0.88	45	4.5	0.3	2	23	398	419	397	419	0.91
4	12	2.4e-07	1.2e-05	25.2	1.0	2	23	425	446	425	446	0.98
5	12	0.0024	0.12	12.6	4.3	1	23	452	474	452	474	0.98
6	12	4.7e-05	0.0024	18.0	0.4	1	20	478	497	478	499	0.94
7	12	5.2e-05	0.0027	17.8	0.1	1	23	532	555	532	555	0.96
8	12	0.027	1.4	9.3	0.1	3	23	564	584	563	584	0.98
9	12	2.3e-05	0.0012	18.9	0.4	1	23	595	617	595	617	0.98
10	12	6.3e-05	0.0032	17.6	4.5	1	23	623	645	623	645	0.98
11	12	0.0023	0.12	12.6	0.3	3	23	653	673	651	673	0.98
12	12	1.6e-05	0.00083	19.4	0.8	1	23	679	702	679	702	0.96

Sequence Information

Coding Sequence: ATGGATACGTGGTCCGATCTTTGCCGCTGTTGTTTGTCTGCCAATTGCGAAGTGTCACTCCTAGATTCGGAGCAGAATGTAACTGACAAGTTTCTTGAAGTTACTACGATCGAGGTTAAGGAAGATGATGGTTTACCCCAGAAGCTATGCTCAGATTGTTACGCCATCATGAATTCTGCTTACCAATTCCGGAAACAGTGCATCAAAATGGATAATGAGCTGAAACTGCAGCTCAATGCTTTACTAGACATAACAAAAATTGATAAAACCCCGCCCGATTTTACTGATGATATAATTGGTGATGATGAAGACATCGGAAGTGATCCGATGAAGCAACTCGCAGCCATCATCAAAAAGGAACCAACAGACAGTGATGATGATTGCTATTATGTCCTGGTTATTGATGATCCCAAAGACAAAGATAAGGAAGACAAGGTGGAATTATCGAATGTGAAAATTGAAAAGATGGATCATGAAAATGAAGTTGCGTACAGCCCTGAGAAACAAACTCAGAGTCAGTTTGAAGATTCTATTGAATCGTTTCTCATGTCCAACACCAAGGTATCAGCTAATGTACCAGCAACTATTCTAGAAAATGAAGAGGGACAGGAAAATGATGAACTGGATGGTGCTATGAACATTGATGAGAATCAAGACAGCATGAATCAAGATCAGAGCCTAGTACAAATGGAAGATTCTAATGACAATCAAATAATAGAAACTATTTCTTCAGACGTCATCAAAGAAATACCGAattctaaaaactttattaaaatcttaactACAACTGACTCAGATGGAACTATCTTGTTGAAGAGTAATGACAGGATACAATATTTGACGGACTCCCAGTTAGTGAATGAAGATGAAGACGGTGACCCAATGTCGCAAGAAGTTATATTCTGCGAAGGTGATGACTCCTCACAGTTCCAAATTTTGAAGTATGATGGGTCAGAACTGGTGATAGAATATGCTGATGATAGCCAAATAGCTACAGTTCTGCAACAAGAAGATGGTACCTTCTTATGTGACTGTGGAGAGCAATTTGAAGACTTGGCTGATTACGAAAAGCATCAGTATAAACACAATCCCGCAGGAGAACACTTGTGTAATCTGTGCGGCAAAGGCTTTGAATCTGCAGAGATACTGACAGGACACATGTTACTACACAGCAGTACAGGCCTGCTAATAACTTGCCCATTCTGCAACCAACTCATCAGACGTAATGCCCTAACACAACACATCAAATATGGCCACAACAATATAAAACCCCGTTGCAACATCTGCTTCAAGACATTTGCTAACCCGAACAACTTGAAACGTCACATGATGATACACAGCGGTATCCGAGAGTTTGAGTGTGACATCTGTTTCAAAAGATTCCATCAGAAGATTACAATGCAGACACACAGGCTGACACACATGAACCCATTCTCCTGCAACCAGTGCGACAAGACTTTTGAGAGTAAAGCAGCACTAACCAGTCACAAAGAATCTGATGAGTGTACTAAATCTAAAGTAATCAAAGTTAAAGAGGAATTAATGAAGACTGTGAAACAAGAAATTACGACAAATCTCGGTAAACTCCTAGGCTATGCATGTTCACTGTGCAAGAAAATGTTTTCAGTGGAATCAGCTTTGGAGCAACATATCGAGAGCTCCCATATTGTGGATCCGACAGAGTTGCTTTGCTCGGAGTGTGGTGATGTGTTGCCTTCTAAGAAGGACATGCAAACTCACATATTGACACATAAGAATCTAAAGGTGAAGAATGCAAAACGGTTTGAATGTAGCATTTGTGGTAAAGGCTGTTCCAGCCAAGCCATGCTATTGATGCATGAACGAGTGCACACCAACGAGAGGCCATTCCCATGCCAGTTGTGCTCCCTACGGTTCAAAACGAAGACTCACCTGCGTACCCACCAGTTAACTCATACAAGGGAAAAGAAGTTTGGTTGTTCTGTTTGTATGAAGTTCTTTGCACTAAAAGGTAATTTAGTTGTGCATCTACGGACGCATACTGGTGAACGTCCATATGTGTGCTCATTGTGTGGCGAAGCTTTCATAGACTCGAAATATCTGAAGAAGCACAAACTAAAGAAGCATGCTATAGAAAATGTTCCGTGGAATCAGTACTAG
Protein Sequence: MDTWSDLCRCCLSANCEVSLLDSEQNVTDKFLEVTTIEVKEDDGLPQKLCSDCYAIMNSAYQFRKQCIKMDNELKLQLNALLDITKIDKTPPDFTDDIIGDDEDIGSDPMKQLAAIIKKEPTDSDDDCYYVLVIDDPKDKDKEDKVELSNVKIEKMDHENEVAYSPEKQTQSQFEDSIESFLMSNTKVSANVPATILENEEGQENDELDGAMNIDENQDSMNQDQSLVQMEDSNDNQIIETISSDVIKEIPNSKNFIKILTTTDSDGTILLKSNDRIQYLTDSQLVNEDEDGDPMSQEVIFCEGDDSSQFQILKYDGSELVIEYADDSQIATVLQQEDGTFLCDCGEQFEDLADYEKHQYKHNPAGEHLCNLCGKGFESAEILTGHMLLHSSTGLLITCPFCNQLIRRNALTQHIKYGHNNIKPRCNICFKTFANPNNLKRHMMIHSGIREFECDICFKRFHQKITMQTHRLTHMNPFSCNQCDKTFESKAALTSHKESDECTKSKVIKVKEELMKTVKQEITTNLGKLLGYACSLCKKMFSVESALEQHIESSHIVDPTELLCSECGDVLPSKKDMQTHILTHKNLKVKNAKRFECSICGKGCSSQAMLLMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSLCGEAFIDSKYLKKHKLKKHAIENVPWNQY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01198026;
90% Identity: iTF_00000544;
80% Identity: -