Tni013612.1
Basic Information
- Insect
- Trichoplusia ni
- Gene Symbol
- ZFY
- Assembly
- GCA_003590095.1
- Location
- NC:1160438-1175751[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.011 0.57 10.5 3.5 1 23 92 115 92 115 0.98 2 24 0.00018 0.009 16.2 4.0 2 23 136 157 135 157 0.97 3 24 0.075 3.8 7.9 1.6 3 23 166 187 165 187 0.93 4 24 0.031 1.6 9.1 3.7 1 23 194 216 194 216 0.95 5 24 0.00016 0.0082 16.3 2.5 2 23 223 244 222 244 0.97 6 24 0.0014 0.072 13.3 2.0 1 23 250 274 250 274 0.97 7 24 0.099 5.1 7.5 2.0 2 23 282 303 281 303 0.94 8 24 0.003 0.16 12.3 5.9 1 23 465 488 465 488 0.97 9 24 0.00082 0.042 14.1 1.4 1 23 497 520 497 520 0.97 10 24 0.039 2 8.8 0.4 2 23 533 555 533 555 0.97 11 24 0.00047 0.024 14.8 0.8 1 23 564 587 564 587 0.97 12 24 0.00053 0.027 14.7 3.0 1 23 599 622 599 623 0.96 13 24 0.00015 0.0079 16.3 0.7 2 23 651 673 650 673 0.97 14 24 0.0016 0.084 13.1 1.2 2 23 683 705 682 705 0.96 15 24 0.3 15 6.0 1.0 3 19 711 727 709 730 0.92 16 24 0.00095 0.049 13.9 1.6 2 21 735 754 734 757 0.94 17 24 0.13 6.5 7.2 1.9 3 23 767 788 766 788 0.93 18 24 0.0012 0.06 13.6 3.0 1 22 793 814 793 816 0.91 19 24 0.00012 0.0062 16.7 1.6 2 23 828 850 827 850 0.95 20 24 0.02 1 9.7 3.5 1 23 876 899 876 900 0.94 21 24 0.27 14 6.2 0.1 2 23 906 927 905 927 0.93 22 24 0.022 1.1 9.6 1.4 2 23 933 954 932 954 0.97 23 24 0.023 1.2 9.5 0.1 1 23 1020 1042 1020 1042 0.97 24 24 0.099 5.1 7.5 1.9 1 23 1048 1071 1048 1071 0.97
Sequence Information
- Coding Sequence
- atgAATAGCATGTTAGAAgaagaggaaataaaaatagagtattTTGAGTCAGTTGAAGAAGATCCTTTGAGTGagaattgtttaaaactttCGTCTGGAGACTGCCTTTCAAACATTTGTAATGAATCaaatgttcttaataaaaatggaCTCCTGGATGTGTCACCATCGAAAGTGAGCCACGGTACAACAAATAAGACCattgatgaaaataatgatCCTATTGAAGAAAACGAAGAAACATGGTTTGACTCAATAAATAATGACGGAAGATATCAATGTAAATTCTGTGATCTCTCATATTCAACCGTCCAAACTGTCCGTCATCATGTGAAAATGAAACATTCAGATCActtcaataacataaaaaatacaactatcAAAACCCTAAGAAGATCGAAATTAAAATGCCATGTATGTAAAAAGAGGTTTAAAAACAAGATAACAATGCAAGAACACATTCAATCACATGGTGTTACCAACATACAAAATTCCTGTTTCGTATGCCACGCAACTTTTACAACAGACACCGAAATGCAGACCCATATATCAGAGAAACATAAAACAAGTGACAAAAGATACCTCTGCGTactatgcggttatagcacatcAAAAACTTCGCATTACAAACAACATACGTACACACATACATTCACAAACCAGCAGAAGTGCTCATACTGTGATTATAAAACTAGTCATCCACGCAACTTGAAGATACATGAACGCATACATACTAATGATAAACCGTATACCTGTAGCTTCAATGGATGCGGTTACCGTTGTGCCTCTAAGTCTGCTTTGCGTAGTCATGAATTGAAACATGAcagagataataatatgttgtattGCGAGCAGTGTAGTTATAAGACAGTGTATAAGCAAagtttgaaaaaacattttgatagtcATAGAAGGAATAATGTGAGGACGAAGTTTGGAAGAAAattagacAAAATGGCAGATTTAGACATAAAAATTAAGATAGAAGATAATGTAGATGCAAGAAAAGATCCTACCTCATTTTTACCTGAGGAACCAATGTCCTATGAAatcaagaagaagaaaaagaagaagaagaaagttCAGGAAGACCCGTTTAAGGATATTGATAATACAATGGATGTCAAACTTGAGCCAACAATCATTATAGACCCAGAGGTTAACATAAAGGTTGAGAATATAGAGGTGGAATTAGATTTCAATGATtttGCAGACAACAGCGGCTTGATGGTAGAAGGTCCTCACAGTGAAGACAGTCAGGAACCAGCAGTAAAAATCGAACCTCACAACCATGAGGCCGTCCTTCTAACATTCGAGAGTGTCATCAACAACTCGGCTACTCAAGACGTCAGCTACCCTGAATTTGGGAGTCTACCTCAAAAGGCACCAACACACGTCTGCAAAGTTTGCCACTTAGTCTTTCAATCACAGAAAACGTTACGCATGCATCAGAAACGAAAACACAAAGCATTCAGGAAGTCATTCAAACATGTCTGTGATTACTGTAACATGTCCTACGAAATGAAGAACAGTTTAGTTGCTCATATTAAGAGGAAACACGGACCTAACTCCATGCCCGATGATCGGGAGGAACGGACTTGCGAAATTTGTGCGCTCGTCTTCAAAGGCATGCCTCGGCTACGAATGCATATGAGAAGGAAACATGGCTCCTTCCAGGAATCATTCAAACACGTCTGCGAAGACTGCGGACTAACCTACGATAAGTATAGAAGTCTCATAGTCCATATACAACGTAAACACTCCAATAATAAGAAGCCAGAAATCAGTCAATGGTTCAACTGCCCATTCTGTCCAAAAATATTCACGAAACGGGAAACCTATGCGAGACACGTCCAGAGGAAGCATCATGTGTCGGATGAGAGCATGAAACAAGATAACGTAACTGATGCTTATTTGGAAAGCTGTAAGAATGAGCAAACTGGTGAGATCACGTGTAAGGAATGCCCTCTAGTCTTCTCTTCTGTAAACTTCCTTAAACTGCATATGAGGAGAAAACATAACGCGTTGAAAGAAGACTTTCGGTTGAAGTGTAGAATTTGTAACTTGTCTTATGACAAGATTGAGAGCCTCAAGAGACATGTTAGGAGAAAACATGATAAGGGATCCCACTGCGTCGTGTGTAATAAACAGTTTGACACACGAGAAATGTACTTAAACCATTCTCATATAAAAGTTATCAAGGAGTGTCATATCTGCGGCTTCATTTTTGCATCCCAAGGAGGCTTAGCAAAGCATTTAAGATGTACACACAAAATAGATGCGGCAAAAACCGTGTTCTGCAATATATGCAATGAGGGTTTCCATGATAAACGGCAATTGAAACCGCATTTCATGAAAGTGCATTTAAAAGTCTCCTACACTTGccaattttgtaaaaaagtgtTCAAAGCGAAAGAGAGTTATCGACGACATATAGTATTTAAGCATCCCAATGCCAATCATTTTAATACTCAGACACAGAAATGTGATCAATGTAACGAGACATTCAAAGATGAATTTGAATTATGTAGGCATATAAATGGTGTTCACGGTCGGCCAGAAGATGAActgaaagaagaaaaagaagtgtcgattaaaaatgaagatttaGATATTAAAGACTGTTTCCAATGCACCAAGTGTCCGGAAACATATTTGACATGGGAGCATTTAAAGTTGCACTACGAGCAAAATCATCACAACGTTGAAGAGACACAGTGTCAAATATGCGGGGAAATTCTCCCAGGCAATGAGCTACAGAAGCACATAAAAACTTTGCACACAGATACAGAAATGCAGTGTAAATACTGTGAGTTTAAAACGAATATTAGGGTTAGCTTAACACAGCATATGTTGAGGCATAAGAATGCTGAGACGATACACTGTGACTATGCTGGatgtaaatacaaaacattttacgatGGTGCAATGGACAAGCATAGACGGAAACATGCAGACCAGGGAGTCAAACTCCAATGCAGCCAGTGTCCATTCCAGACGATgaataagtacattttaaagtacCATGAGGAAGCTCACGAAACTGGCAAGAAGAGGTACATGTGTGATCAATGTGATTATGCAACAATACTGCCAGCGAACTTAGTCCAACACAAATATAAGCATTCTACGGAGAAACGGTTCAAATGTGAAGTGTGCCCATTTGCAACGAAGTATAATACTTCACTACGATTCCATGTTAGGAAGAAACACTGTGATCTCCCCACATTCagttaa
- Protein Sequence
- MNSMLEEEEIKIEYFESVEEDPLSENCLKLSSGDCLSNICNESNVLNKNGLLDVSPSKVSHGTTNKTIDENNDPIEENEETWFDSINNDGRYQCKFCDLSYSTVQTVRHHVKMKHSDHFNNIKNTTIKTLRRSKLKCHVCKKRFKNKITMQEHIQSHGVTNIQNSCFVCHATFTTDTEMQTHISEKHKTSDKRYLCVLCGYSTSKTSHYKQHTYTHTFTNQQKCSYCDYKTSHPRNLKIHERIHTNDKPYTCSFNGCGYRCASKSALRSHELKHDRDNNMLYCEQCSYKTVYKQSLKKHFDSHRRNNVRTKFGRKLDKMADLDIKIKIEDNVDARKDPTSFLPEEPMSYEIKKKKKKKKKVQEDPFKDIDNTMDVKLEPTIIIDPEVNIKVENIEVELDFNDFADNSGLMVEGPHSEDSQEPAVKIEPHNHEAVLLTFESVINNSATQDVSYPEFGSLPQKAPTHVCKVCHLVFQSQKTLRMHQKRKHKAFRKSFKHVCDYCNMSYEMKNSLVAHIKRKHGPNSMPDDREERTCEICALVFKGMPRLRMHMRRKHGSFQESFKHVCEDCGLTYDKYRSLIVHIQRKHSNNKKPEISQWFNCPFCPKIFTKRETYARHVQRKHHVSDESMKQDNVTDAYLESCKNEQTGEITCKECPLVFSSVNFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCVVCNKQFDTREMYLNHSHIKVIKECHICGFIFASQGGLAKHLRCTHKIDAAKTVFCNICNEGFHDKRQLKPHFMKVHLKVSYTCQFCKKVFKAKESYRRHIVFKHPNANHFNTQTQKCDQCNETFKDEFELCRHINGVHGRPEDELKEEKEVSIKNEDLDIKDCFQCTKCPETYLTWEHLKLHYEQNHHNVEETQCQICGEILPGNELQKHIKTLHTDTEMQCKYCEFKTNIRVSLTQHMLRHKNAETIHCDYAGCKYKTFYDGAMDKHRRKHADQGVKLQCSQCPFQTMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -