Basic Information

Insect: Trichoplusia ni
Gene Symbol: -
Assembly: GCA_003590095.1
Location: NC:4972218-5008729[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.014 0.73 10.2 0.2 1 23 232 255 232 255 0.97

2 20 0.024 1.2 9.5 1.3 1 23 261 283 261 283 0.98

3 20 0.023 1.2 9.5 3.8 1 23 287 309 287 309 0.96

4 20 0.001 0.053 13.7 5.0 1 23 339 362 339 362 0.97

5 20 0.062 3.2 8.2 2.2 1 23 365 388 365 388 0.92

6 20 0.62 32 5.0 0.5 3 20 396 413 395 415 0.93

7 20 0.00068 0.035 14.3 0.1 2 23 428 450 427 450 0.94

8 20 2e-06 0.0001 22.3 0.8 1 23 456 479 456 479 0.98

9 20 3.4 1.7e+02 2.7 0.2 3 11 490 498 489 503 0.88

10 20 0.097 5 7.5 0.8 1 23 702 725 702 725 0.92

11 20 0.016 0.83 10.0 0.1 1 23 732 754 732 754 0.98

12 20 3.3 1.7e+02 2.7 0.6 1 10 758 767 758 781 0.74

13 20 0.99 51 4.4 2.2 1 23 788 810 788 810 0.82

14 20 2.4e-05 0.0012 18.9 0.8 2 23 815 837 814 837 0.93

15 20 2.1e-05 0.0011 19.1 1.0 1 23 843 865 843 865 0.97

16 20 0.023 1.2 9.5 3.0 3 21 878 896 877 901 0.93

17 20 4.8e-05 0.0025 17.9 2.0 1 23 909 932 909 932 0.94

18 20 0.0013 0.067 13.4 0.7 1 23 937 960 937 960 0.97

19 20 1.2e-06 6.1e-05 23.0 3.3 2 23 968 989 967 989 0.97

20 20 3.4e-06 0.00018 21.5 1.3 1 23 995 1018 995 1018 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.014	0.73	10.2	0.2	1	23	232	255	232	255	0.97
2	20	0.024	1.2	9.5	1.3	1	23	261	283	261	283	0.98
3	20	0.023	1.2	9.5	3.8	1	23	287	309	287	309	0.96
4	20	0.001	0.053	13.7	5.0	1	23	339	362	339	362	0.97
5	20	0.062	3.2	8.2	2.2	1	23	365	388	365	388	0.92
6	20	0.62	32	5.0	0.5	3	20	396	413	395	415	0.93
7	20	0.00068	0.035	14.3	0.1	2	23	428	450	427	450	0.94
8	20	2e-06	0.0001	22.3	0.8	1	23	456	479	456	479	0.98
9	20	3.4	1.7e+02	2.7	0.2	3	11	490	498	489	503	0.88
10	20	0.097	5	7.5	0.8	1	23	702	725	702	725	0.92
11	20	0.016	0.83	10.0	0.1	1	23	732	754	732	754	0.98
12	20	3.3	1.7e+02	2.7	0.6	1	10	758	767	758	781	0.74
13	20	0.99	51	4.4	2.2	1	23	788	810	788	810	0.82
14	20	2.4e-05	0.0012	18.9	0.8	2	23	815	837	814	837	0.93
15	20	2.1e-05	0.0011	19.1	1.0	1	23	843	865	843	865	0.97
16	20	0.023	1.2	9.5	3.0	3	21	878	896	877	901	0.93
17	20	4.8e-05	0.0025	17.9	2.0	1	23	909	932	909	932	0.94
18	20	0.0013	0.067	13.4	0.7	1	23	937	960	937	960	0.97
19	20	1.2e-06	6.1e-05	23.0	3.3	2	23	968	989	967	989	0.97
20	20	3.4e-06	0.00018	21.5	1.3	1	23	995	1018	995	1018	0.95

Sequence Information

Coding Sequence: atgaaagaaataaagactttgaacTTGAAAATGATGGATGACACTGAATTGAAACATGAATTTATAAATGATGGCCAatgctttgtttgtttgtctgttggccgaaagttatttaatttaggaGAATATATTGATGTATTTAAGAAGATAACTGCAGATTTGGAGTATcagaatCACTTACCTTTAGAAGAAGTCCAGATATGTTGGGAATGTTATGCTTTTCTAAGGAGGTTgaatcagtttttattaaaagtaaataaagcaTATGAACTCTTTGCTTTAGGACagAACTATATACATGGATCTCAATCTAATTTAACGACTATTATACTGAATGAGTCATACCCACAAACATTGTATTTAGCTGATGTTGTCATGGCAACCGATGTAAACAGCGCAGTCAAGAATGATGGCTTTGATGATTTGACAGATGACCTTAATACTGGAGATTTATTCatagatgaaattaaaattgaagatggtaaaaaagatgaaaataagGAAATGTCAGatccGAAAAAACCGAGAAACAATCGTTGGGCAAAACAAAgagctttacaaaataaaaagccaaaattcaaaattattacagaatatacaaaagatagttttaaaaacatagaaATAGATGAGAAAGAGTTAAGGTTATATTTAGAGAGAGAGAGGAAGAGTGAACAATATATATCGAAACAGTTTAAATGCGAAACGTGTGTGATAGCATTTGAAAATGAGGATTTAATGAAACAACATGAAAACATGTTACATGACCAGTCAAAACCATATCCTTGTGATATATGCAACTCAAGATACTTGAAAAAGCGACATCTAGCGGTCCACATACGGAATCATTACAAGAAATACTTGTGCACAGTTTGCGATTATGCGACTTGCGACAAATCGCAGCGACAATCGCATTATAAGAAACACAAGAGAGTCTTTCAATGCATAAAGTGTAAATTGAAATTTAGctGCCGCAAAGAATTCTTTCAACATCACAAGGATTGGCATGAGCTATTCATATGCGATCACTGCGGAATCAGTTTCAAAATGAGATACTGTATTAAAGATCATATGAGAAAACAACATTCCCCACACAAATGCGAGCCCTGCAACCGCACGTTCACTCGATACAACGGCCTCTGGCTACACAACAAGCTGACTCACGCGGCACCGAACCCGCGATACTGCGTTGAATGCGACACTCACTACCCGGACAGACACCGGTACCAGTGGCACTTGGCTAATAGCGCAAGACATCGGAAGCGGAGGGGGAGTAGGATACCTTGCCCGGGCTGCGACAAAATCTTCTCCAAGAATATATACATGAAGGATCACTATAATTTGGTACATttgaaaaactataaatacaGATGTGAGGAATGCAATAAGAATTTCATTCGCAATGCAGACCTAGTGAAACACAAGCGTCGTATCCATGAAGGTATAAAACCGCCCAAGAATAAGATCTGCTACGTCTGTGGAAAGGGTTTCTCCCTCTTCAAACTGAACTCAATCAATCTCCTCATATGCTGGGAGTGCAAGGCCCTCTTAGATAAGAGTTTGGCTTTCAGGGAACAGGTCCAGGACTCCTACAGGATACTACAGACTTATACCAATGAGAACCTTCACGAATGCCTCCTCTCAGAGGTGACTAGGCCTCCGCGCTTGAAGATACACGTCAGTGACTCAGTAGACATAGCGCCGGCGGACGGCAGTGCGGGTAGCGGGTTTGAGGAGGTGCCGGTCATATGCGTCAAGGATGAGGTCAAAAATGAAATGAAGGATCCGTGGGATAGTGATAAAGATGAAGATATAGATCACCTAGAAGACGATTGTCCCCTAACAGACAGCTCAGACTGCACAAAAAATCTAGATTCTGAACTCCAGACTATAATAAGTACTATAAAGagagataaaaagaaaaagactgacgtcaaacacaaaataaagaGACCTAAGAAGATCGTGAAGAATTTGAAGACAGAGAAAAAGCCAAAACTCAAAGATCCAGATCAAAAGATTCTAACAATAGAGTTGACGTACGAGGAACTCATGCAAGAGAGAGAGAAAGAGTCGACAAGAGAAGTGTACCTCAAATCGGAGTATAAATGTGAGAGTTGTCTAATCGGCTTCAACTATAAAAAGTCGTATCAAGCTCATGTCACTGCCAAACATTCATTGGAGCTTGGTGAATATATCTGTCCTATTTGTAAAACTATAATAGCTTCAGTTGAATCATTTACGGCGCATTATAAAAGACATATGAGAAGatatgAATGCAGTATTTGTCAGAAACGCACTCTAGATATGAAAGTAATGCaacaacattattattctaCGCACGAGATATCTTTAAAGGAATATAAATGTAACCTTTGTGGGAAAATATCGaaCTCTATAGACACACATCGTTACCATAAAGACACTCATAAAGCCAGAGTGCAGTGCACAGAGTGTGACAAAACCTTCAGGCATAGAGCAGGACTCATGAACCATAGACTtGCAGTCCATGAGTTTCACAACGCGTTCCCTTGTACCATTTGTGATAAAGTGTTTCGTTGGAAAACTAGTCTTAAACGGCATTTAGAAAAACATGAAGTTAagGCAAAGTCGTCTACAGCGGCCGCCTACTGTCTAATGTGTAACGTTAGTTTCTCATCGCTCTGTTCATATCAGAGACACATGAAAAACAGCTTGAAACATGTCACACAGGATCAGCTGAAGTTCATATGCGATCATTGCAACAAGAGGTTCGCCGATAAAACTAAGCTACGCGATCATATTGAAGAAAAACACTTACATAAGACTTACCAATGCCATATTTGTCTAAAGCCATCCAAAAACCGCGTGGGATTAGATCAGCACATTCGCAACGTCCACAAAGGAAGACCGAATAATAAAATGTGTCATCACTGTGGGAAAGGATTTCCTacTAAAGTCCAACTGGAATCTCACATTCGCACTCACACTGGTGAACGTCCTTTCATTTGTGAATATTGTCCGACAACGTTTTCGCAACAGTCTAATTTATATAAGCATAATAGACAGGTACATCTGAACATCAAATCCAAACGTTACCCCATATGCAAGCGGAAAGACGAAAAACCACCGGAAGTGACGATACCGGATAGCTGTGAACCTGTCGACCCGTACAGGAACGTATCCATGTTATATACAGACAGAGGTTTCGTTATATAA
Protein Sequence: MKEIKTLNLKMMDDTELKHEFINDGQCFVCLSVGRKLFNLGEYIDVFKKITADLEYQNHLPLEEVQICWECYAFLRRLNQFLLKVNKAYELFALGQNYIHGSQSNLTTIILNESYPQTLYLADVVMATDVNSAVKNDGFDDLTDDLNTGDLFIDEIKIEDGKKDENKEMSDPKKPRNNRWAKQRALQNKKPKFKIITEYTKDSFKNIEIDEKELRLYLERERKSEQYISKQFKCETCVIAFENEDLMKQHENMLHDQSKPYPCDICNSRYLKKRHLAVHIRNHYKKYLCTVCDYATCDKSQRQSHYKKHKRVFQCIKCKLKFSCRKEFFQHHKDWHELFICDHCGISFKMRYCIKDHMRKQHSPHKCEPCNRTFTRYNGLWLHNKLTHAAPNPRYCVECDTHYPDRHRYQWHLANSARHRKRRGSRIPCPGCDKIFSKNIYMKDHYNLVHLKNYKYRCEECNKNFIRNADLVKHKRRIHEGIKPPKNKICYVCGKGFSLFKLNSINLLICWECKALLDKSLAFREQVQDSYRILQTYTNENLHECLLSEVTRPPRLKIHVSDSVDIAPADGSAGSGFEEVPVICVKDEVKNEMKDPWDSDKDEDIDHLEDDCPLTDSSDCTKNLDSELQTIISTIKRDKKKKTDVKHKIKRPKKIVKNLKTEKKPKLKDPDQKILTIELTYEELMQEREKESTREVYLKSEYKCESCLIGFNYKKSYQAHVTAKHSLELGEYICPICKTIIASVESFTAHYKRHMRRYECSICQKRTLDMKVMQQHYYSTHEISLKEYKCNLCGKISNSIDTHRYHKDTHKARVQCTECDKTFRHRAGLMNHRLAVHEFHNAFPCTICDKVFRWKTSLKRHLEKHEVKAKSSTAAAYCLMCNVSFSSLCSYQRHMKNSLKHVTQDQLKFICDHCNKRFADKTKLRDHIEEKHLHKTYQCHICLKPSKNRVGLDQHIRNVHKGRPNNKMCHHCGKGFPTKVQLESHIRTHTGERPFICEYCPTTFSQQSNLYKHNRQVHLNIKSKRYPICKRKDEKPPEVTIPDSCEPVDPYRNVSMLYTDRGFVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -