Tni013777.1
Basic Information
- Insect
- Trichoplusia ni
- Gene Symbol
- -
- Assembly
- GCA_003590095.1
- Location
- NC:4215070-4232022[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.062 3.2 8.2 1.4 1 23 229 251 229 251 0.98 2 16 0.0031 0.16 12.2 0.1 2 23 279 301 278 301 0.92 3 16 0.0025 0.13 12.5 1.2 2 23 322 344 321 344 0.95 4 16 0.00097 0.05 13.8 3.9 1 23 349 371 349 372 0.95 5 16 0.0014 0.069 13.4 1.5 1 23 376 399 376 399 0.93 6 16 0.0015 0.076 13.3 1.8 2 23 402 424 401 424 0.96 7 16 0.16 8.3 6.8 0.1 2 19 429 446 428 449 0.92 8 16 5.5e-06 0.00028 20.9 1.5 1 23 496 519 496 519 0.96 9 16 0.046 2.4 8.6 0.1 2 23 548 570 547 570 0.94 10 16 5e-05 0.0026 17.9 0.0 1 23 592 615 592 615 0.96 11 16 8.4e-06 0.00043 20.3 0.5 1 23 620 643 620 643 0.96 12 16 4.7e-05 0.0024 18.0 0.0 1 21 649 669 649 672 0.91 13 16 0.0019 0.097 12.9 0.4 2 23 678 700 677 700 0.96 14 16 0.0055 0.28 11.5 5.8 1 23 704 727 704 727 0.97 15 16 0.17 8.8 6.8 0.5 2 23 734 755 733 755 0.96 16 16 0.026 1.3 9.3 2.2 1 23 761 783 761 783 0.96
Sequence Information
- Coding Sequence
- ATGATGGAGTTTGACGAGATAGTGGTGAAAGAAACGCCCGGCCTTTGCCGGTGTTGTCTCTCCGAAGGTTGTTACAAAGACTTGGGGTCTGAATATTCATGGATGAATGAGACGGAAGTCTACGCTGATATGTTGCTAGAATGCTTTGATATAagtATAACGCAACACAACGAAGGTCCGAACGGTCCAAACCGTTTAATATGTGAAGTTTGCATCACTCGGCTACGCGATGCCTGCAACTTTAAGAAGCAAGTCTTGGACTCGGAGAAGAAATTCATTGACATGATGGGACGGGGAGAGTTCAGGCCGAAGATGCTAATCTATCAGACACAGATGAAGGCTGAGGATGCAGTCGAGGCGGTTGCCGATGATGCTGAAGTGGAATATCTCGAAGACGATATCGATTTCGGCGAAGAAGACCTAATCAAAGATGAGACGGAGCCGTCAGTCTCCGACATAACTGTCTCCACTCTACCGGTAAAGGGTAAACGCGGGCGGCCCCGCAAGAACGCGCTAGTCAAGCCAGAGAAGCGATTGAAGACCAAAGTCGATGATAAGAAGAAAGTCGTGGCTAAAGGTTTGGAAAGTGAGCCGACAAAGAACAGTGCTAATTATCTAAGGAGGCGGAATCTGCAAATATTATTCAACAATACCACTTTAATACCCTTTAAGTGGCGCGGGAAATACATGTGCTTTTTCTGCGGTGACGATTTTGACACTTACGAAGTATTGAAAAAGCATACCAAGAGCCATGGCCTCTGTAGTCACAAAGATAGGGCTTTAAAACTCGTTAAGGCATCAGACAGTGAAATTAAAATCGACGTCTCAGATGTAACTTGCGAGATTTGCTCAAAAACTTTCTCCGATCTAGATAAAATTGTCGATCATTTGATCTTAGAACATAGTCTTCCGTATAACAGAAACGTAGAGCTAATGATGTCTGCATATAGGCTAATTGATCTCCAATGCCTGCTCTGCGAtacgaaatttaattatttacgtaaattAATCTCTCATATGAATAATTTTCATCCGAATAACTGCTTTATGTGTCAAGATTGTGATcagaaatttaacaaaaagagAGACTTAGATTCACACGTTCGTTTCCATCATAGAAAAGAGTATGCTTGTATGAAATGCCAACAAACATTCCCGTCAAATTCTGCGTTACACACCCATAGAACAAACGCCCATTCATCCACTTGTAATATCTGCTTCAAAACATTTTCGTCTGATAGCAAAAGACTGGTTCACATGAAAAGGGATCACGACGATCAAACCGAATGCGGGTTCTGTCAAAGAGTTTTAACAACCAAACAAGCGTTCTTAAGACATGCAGCCATATGCACGGAGAATACTAAAAAGGACGTAATAGTTATAGATGACGAAGAAAAAAAGCAATCCGTTAAAGAATTAAGGAGCAGTATAGCGTGTATCTTTAATATGTCTACAGCATTACCTTTCAAATTCTTCATGAACCGCTTCAGATGTTTTTATTGCCCAAAAGATTTTACGACCAGCGATGATTTGAAACAGCATACTCTATCAGAGCACCCCTTATGTGATATCTCATTTAAATCCATGAAGTTGAGAAATAGATACGATGGTGTCCAAATCAAAATTGATATCTCGAATCTTTCTTGCAAGCTGTGTCTTGAGGAATTAACAGATTTAGATGATCTAATTCGCCATCTAACCTCAGAGCACAAAGTTAACTGCGACAAATCTCTTGAGAGTAATATCCaatgtttcaaattaattaaagacaatTTCCCTTGTCCCATATGTGGTGAGATATTTCGATATTTCGGACTTCTTCTAAATCATATCAGCCGAGCTCATACggataataaatacatatgcatGTATTGTGGAAAATCTTTCCGTACTGACCCGAACTTGAGGGCTCACGTCTCCCGAAGGCATACGAACTTAGGTAACTATAAATGTTCGGACTGTGATCTCGTATTCCCGACGAATAATGCTTTGAAAATCCATTTGGGAGCTGTCCACGGGAGCAAAATCATCCAATGTAGTGAGTGCTTAGATAAATTCACCTCACAATATTGGATGCAAAGGCACATGATTACCATTCATGGTACCGGCCACAAGTGCTCTTATTGCGGCAaacttttcattaaaaactcttttatggTGAACCATGTTAGAAGATGTCATTTGAAAGAGAAAAATGTTGAGTGTTCGGTCTGTTTCGAGAGATTTTTCGATGGGCAAAGATTGAAAATGCACATGGTTAAACATATAGGTGAAAGGAATTTCCATTGTGATGTTTGCGGTAAGAAGTTCCTGTGGAAACGGAATCTTAGAGGGCATATGTCTTCTCATATAAGGAATTCTAATGCTCAAGTTACATAG
- Protein Sequence
- MMEFDEIVVKETPGLCRCCLSEGCYKDLGSEYSWMNETEVYADMLLECFDISITQHNEGPNGPNRLICEVCITRLRDACNFKKQVLDSEKKFIDMMGRGEFRPKMLIYQTQMKAEDAVEAVADDAEVEYLEDDIDFGEEDLIKDETEPSVSDITVSTLPVKGKRGRPRKNALVKPEKRLKTKVDDKKKVVAKGLESEPTKNSANYLRRRNLQILFNNTTLIPFKWRGKYMCFFCGDDFDTYEVLKKHTKSHGLCSHKDRALKLVKASDSEIKIDVSDVTCEICSKTFSDLDKIVDHLILEHSLPYNRNVELMMSAYRLIDLQCLLCDTKFNYLRKLISHMNNFHPNNCFMCQDCDQKFNKKRDLDSHVRFHHRKEYACMKCQQTFPSNSALHTHRTNAHSSTCNICFKTFSSDSKRLVHMKRDHDDQTECGFCQRVLTTKQAFLRHAAICTENTKKDVIVIDDEEKKQSVKELRSSIACIFNMSTALPFKFFMNRFRCFYCPKDFTTSDDLKQHTLSEHPLCDISFKSMKLRNRYDGVQIKIDISNLSCKLCLEELTDLDDLIRHLTSEHKVNCDKSLESNIQCFKLIKDNFPCPICGEIFRYFGLLLNHISRAHTDNKYICMYCGKSFRTDPNLRAHVSRRHTNLGNYKCSDCDLVFPTNNALKIHLGAVHGSKIIQCSECLDKFTSQYWMQRHMITIHGTGHKCSYCGKLFIKNSFMVNHVRRCHLKEKNVECSVCFERFFDGQRLKMHMVKHIGERNFHCDVCGKKFLWKRNLRGHMSSHIRNSNAQVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -