Tni000280.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichoplusia ni
Gene Symbol
ham
Assembly
GCA_003590095.1
Location
NC:8222431-8256961[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.22 11 6.4 0.0 2 23 264 286 264 286 0.95
2 9 0.00048 0.024 14.8 0.7 1 23 293 316 293 316 0.93
3 9 1.7e-08 8.7e-07 28.8 0.1 1 23 322 345 322 345 0.96
4 9 1.5e-06 7.5e-05 22.7 1.7 1 23 351 373 351 373 0.95
5 9 5.2e-05 0.0027 17.8 6.1 1 23 379 401 379 401 0.99
6 9 7.5e-05 0.0038 17.3 0.6 2 21 409 428 408 429 0.95
7 9 1.2e-08 6.4e-07 29.2 0.7 1 23 824 846 824 846 0.98
8 9 4.5e-07 2.3e-05 24.3 1.7 1 23 852 875 852 875 0.97
9 9 1.7e-05 0.00086 19.4 3.2 1 23 881 903 881 903 0.98

Sequence Information

Coding Sequence
ATGCTGAATTTTGATACgagttttaaaatgaagatgTCTGCAGCGGACAGCCAGGAGTCTGGCAGCCCACCGCCGAGTCCGACTGACTCCGCCACATCTGAATCTGCACCCACCCTAGTCCACATCAAGCAGGAGACCATGCCGCCTGGGACAGACGTCAAGGAGTACTACGGCTCGATAGACTTCAGTCTCTCCGACACATATCTATCTTCGAACTTCCCCGACTATGGGCGAGGGTACCTGCCAAGGCCTTTGGATCCAAACCAAAAATTCTCTGATTCAAAAAGTCCGAAAGATGAAATAGACGATGGGACAAAAGATGATGATCCTGGGGAAAGAGATTTTAATTTACCCACTGAGTTGCTTTATAAGAATGGTGGAATATTTGCGAGACTGAATATTGCTAATGAAACTCAGTATGGACCGTACCTCGGGCTGTTGGAGTTGCAGCCCAAAGACAGGCGATATGCTTTGGAGGTTCGTGACAAGAATGGTGTGAGTGGATGGCTCGATGCCACCACAGAGAAGAGCAACTGGCTGAAGCTGGTGCGCTCCACCAACTACCCTCAGGAGGTCAACGTGCAGCATCTGTTGTTGGGAGGCCAAGTATGGTTCAAGGTTGTCCGCGAGATTTCTGCAGGACAGGAGCTGTTGCTCGGTCCCCGCACGCCGCTGCCTCTGGGGGACCTCTTCTCTTCACTATTAGATCCTAAGCGTCGCCGCCTGTTAGCGAGTTCATCTGCTGAGAAAACTCAAGCTGAGGAAGAAGACCAAGAAGACGCAGAACCCCGCTGCAACTTCTGCGATATACCCTTCCCTAATATCGACATTCTCGATCGCCACTTGATAACGGAGCACGCGCAGCCCCCAGCAGCATTTCACTGTGAACTGTGTAACAGAGCTTACAGCACCCGCGCCTTGCTCCTGCGCCATCGTGCTCTTGCGCACACCGACATCAGAAAGTACCCCTGCGAGAACTGTCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATTCGCGCGCAGCACGTGGGCGCCCGCAGCCACGCCTGCCCTGAGTGCGGCAAGACCTTCGCCACCTCGTCCGGACTCAAGcagcacacacacatacactcCAGCGTCAAGCCGTTCCAGTGCAAGGTGTGCTTTAAGgcATACACCCAGTTTTCCAACCTCTGTCGTCACAAGCGAATGCACGTTGCCTGTAGAGCTCTGGTTGAATGCCAGAAATGCGGACAGTCCTTCACTTCCTACGCATCTCTTACTAAGCACAAGAGGTTCTGCGACACCGCTGCCGCTGCATCAGTCAATCTGCGAGGTCAAATGCCTCAAGGCTTACCACAAATATCGTCCTTACCAAACGTCGGAATGAATACTCCAAACAACACCAATCCATTCCCTATGTACAGGGGACCCACTTTGCCCTTACCGTATAACACATTCGCTCACTACCCGGCTCTGTTCTCAGCCGCGGCTGCTGCTTGCCCACCAGAGTTCCTTAGTCCGCTTCTGTTTAATGTGCAAGGAGCACGACTAGCTATGGAAGATATGGCTATGTCCAACGCTAACTTAGTATCAAAACAACAAGAAGGTCGCTTATCTGTAAAGAGCATGGATAGCTCCAATTCTATGGAAGACAACAAAAAGCCCAAAAATCTGGACTATGAAACTAAGAGAGACAGCTACAGCTCAGACCGAGCCACACCAAACAAACTACCGAGTTTATACGCGAAACAATCACCACCATCAGCTGAAGAAGCGACATCTCAACAGCGACCATCACCTGTTATGCCAATGCCAACACCAATTGTTCCATTCAACTTTTCAAGAGATGAGATGAAACAAAAGAGTCCTTTCAACTTCTCCCTCAAGCTCAACAACAATGATATCCAAGGTTTGAAGTCTGAATCACCTTTGCCTAAAGATTTATCTAAGAACGTTGTAGAAGACGACAAAACTTCAGAGTATTCAGATGTTGAGGAAGATATCAAGAAAGATGATGGCGACCAGCCATTGGATTTATCAGTAACAAGAAAACAAAGTGATAAGGATTCTGAAGTAGACAATGATGACCGTTCCTTTCGCAATTCAGTCAAGTCTTATTCGCCACCTGAAAGCCCAGCAGAACGTAGCAAAACTCCTGAAAATGACACAACCGACGTTGATGTGGAATGCGTAGAACCTAAAAGAGAAGATTCTCCTCCTCAACTGGTATCACCACCACTTGCGTTCCCAATGCCCGTCCACCCGCAGCACAGCAGCTTACTCGATGCTATGTACCGGCCTCGATTTCCGTCTTTCCATTCATCAGAATCAATTCTAAACTCGTCACACTCGCCTTATGTACCGAGTCCGTTCAATTTTTTATCCCCACTTCTCGGTACTGATGGGCCAGACAGGCAACCTAGCGCATATGCTAAGTTTCAAGAATTGAGCGCTGGATCTGGAAAGCTGCGCGATCGCTACGCATGCAAGTTCTGCGGGAAAGTGTTCCCTCGCAGTGCCAACCTCACACGACATCTGCGTACTCACACAGGGGAGCAACCTTACAAGTGCAAGTATTGCGAACGTTCTTTCTCAATTTCATCGAACCTTCAACGTCACGTAAGGAATATTCACAACAAGGAGAGGCCGTTTCGGTGCCCCTTGTGCGAGAGGTGTTTCGGACAGCAGACAAATCTCGATCGTCACTTGAAGAAGCACGAAGCTGAAGGTGGCGATTCCCCAAGTTCGGCGGACACTGAGAGGGAGGATGCGTATTTTGATGATATCAGGTCATTTATGGGTAAGGTGACATGTTCCCCGGGCACGCGCTCCCCGGCCGCCACGCCCCCGCACGGCGCGCACGCGCGGCCGTCGCTGGCTATCTCCACATAG
Protein Sequence
MLNFDTSFKMKMSAADSQESGSPPPSPTDSATSESAPTLVHIKQETMPPGTDVKEYYGSIDFSLSDTYLSSNFPDYGRGYLPRPLDPNQKFSDSKSPKDEIDDGTKDDDPGERDFNLPTELLYKNGGIFARLNIANETQYGPYLGLLELQPKDRRYALEVRDKNGVSGWLDATTEKSNWLKLVRSTNYPQEVNVQHLLLGGQVWFKVVREISAGQELLLGPRTPLPLGDLFSSLLDPKRRRLLASSSAEKTQAEEEDQEDAEPRCNFCDIPFPNIDILDRHLITEHAQPPAAFHCELCNRAYSTRALLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECQKCGQSFTSYASLTKHKRFCDTAAAASVNLRGQMPQGLPQISSLPNVGMNTPNNTNPFPMYRGPTLPLPYNTFAHYPALFSAAAAACPPEFLSPLLFNVQGARLAMEDMAMSNANLVSKQQEGRLSVKSMDSSNSMEDNKKPKNLDYETKRDSYSSDRATPNKLPSLYAKQSPPSAEEATSQQRPSPVMPMPTPIVPFNFSRDEMKQKSPFNFSLKLNNNDIQGLKSESPLPKDLSKNVVEDDKTSEYSDVEEDIKKDDGDQPLDLSVTRKQSDKDSEVDNDDRSFRNSVKSYSPPESPAERSKTPENDTTDVDVECVEPKREDSPPQLVSPPLAFPMPVHPQHSSLLDAMYRPRFPSFHSSESILNSSHSPYVPSPFNFLSPLLGTDGPDRQPSAYAKFQELSAGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCERCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGTRSPAATPPHGAHARPSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00441779;
90% Identity
iTF_00327260;
80% Identity
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