Basic Information

Insect: Trichoplusia ni
Gene Symbol: -
Assembly: GCA_003590095.1
Location: NW:28329-32463[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.2 4.7e+02 1.3 0.2 5 21 211 227 208 228 0.90

2 12 0.0069 0.36 11.1 0.3 2 20 284 302 283 304 0.92

3 12 2.5e-05 0.0013 18.8 2.4 1 23 312 334 312 334 0.99

4 12 6.9e-05 0.0035 17.5 0.9 1 23 342 365 342 365 0.97

5 12 0.00041 0.021 15.0 0.3 1 23 371 393 371 393 0.97

6 12 0.0016 0.082 13.2 4.9 1 23 400 422 400 422 0.98

7 12 2.7e-07 1.4e-05 25.0 1.2 1 23 428 450 428 450 0.96

8 12 2.1e-05 0.0011 19.1 0.8 1 23 456 478 456 478 0.98

9 12 8.7e-07 4.4e-05 23.4 0.2 1 23 484 506 484 506 0.98

10 12 0.0002 0.01 16.0 0.3 1 23 512 534 512 534 0.96

11 12 3.5e-05 0.0018 18.4 2.2 1 21 540 560 540 562 0.96

12 12 4.3e-06 0.00022 21.2 0.3 1 23 568 590 568 590 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.2	4.7e+02	1.3	0.2	5	21	211	227	208	228	0.90
2	12	0.0069	0.36	11.1	0.3	2	20	284	302	283	304	0.92
3	12	2.5e-05	0.0013	18.8	2.4	1	23	312	334	312	334	0.99
4	12	6.9e-05	0.0035	17.5	0.9	1	23	342	365	342	365	0.97
5	12	0.00041	0.021	15.0	0.3	1	23	371	393	371	393	0.97
6	12	0.0016	0.082	13.2	4.9	1	23	400	422	400	422	0.98
7	12	2.7e-07	1.4e-05	25.0	1.2	1	23	428	450	428	450	0.96
8	12	2.1e-05	0.0011	19.1	0.8	1	23	456	478	456	478	0.98
9	12	8.7e-07	4.4e-05	23.4	0.2	1	23	484	506	484	506	0.98
10	12	0.0002	0.01	16.0	0.3	1	23	512	534	512	534	0.96
11	12	3.5e-05	0.0018	18.4	2.2	1	21	540	560	540	562	0.96
12	12	4.3e-06	0.00022	21.2	0.3	1	23	568	590	568	590	0.98

Sequence Information

Coding Sequence: ATGGAAATTAGCGTTCActcatttgaaaaaatatgccGAATATGTCTAATAGAATGTACCGACATGAAATCATTGTTTTCAAAGACAGATGATGAAGAACGAAACCTACTTGAAATACTCGAATATACTGCGAATATTAATGTTCATATTGAGGATAATTTGCCTAAACAGGTCTGTTGTGAATGTCAAGATGTTATGTGCAAGGCTGACGCGTTCAAGCGCCGCTGTCGGGAGTCCGAGAAGATATTAAACAACCTGTGCGAGTTCggcatacaaaaaaaagaaacacaaactTCTAATGATAGTGATTACTGTATTAAACACGAAAACGGTGATGTTAACGATCAGTTGGACATAGACAACAGTTTTCCGCCGAATGATGCCGGTAAAGACAGTTTTGATGTAAAAAATGGTGGACTATTTAAAGTTATAGCAGTATACCCTGCAGGAGAGACCAGCATTGGTAATATTGACACAAATGTATCTGATAATTGTGCCATACATGTCAAGGTAGAGGCGGTCAACAAATACGAGGATGACACAGACTTTTCAAACCATTTTAATGACGCCGAAGACACAAGTTATTCGGAGGAAAAcagtgataaaaaattaaaaacatttcaccAATGCAACTGCGGATTAATAGTTAGTAGCATAGATAAATTGAAAAGTCATGTTAAACTGggaaattgtaaacaaaaaaaagttaaacagaAACTAACTAAGAAGGTTGCAAAACCAAATAAGGTTTGTTCCAATGACTATGATAAAGTTCCATCTATACTAACAACTTGGGAAGATCACCAACAAACACGTCAAAATGAACACATAGACAATACGGAACCACTGGAATGTCTATTATgcttaaaaacattcaaaactaAAGCGCTACTGGCCGCTCATAAGCATGAAAAGTCAGAAAAAAGAGAATTCTTCCAATGCTCATTATGTTTAcgtagatttaaaaacaaaaaatcactcTCTGCTCACATACAAAGGCATAAGGAAACCGACAACATTAAACATGTTTGTGAGGTCTGTAAGAGAGAGTTTAAATACAAAGCATTTTTAGAAAATCATATAATAACAGTACATTCAAAGAAAAGAGGTTATTCCTGTGATGTATGCAGCCAAAGTTTTTCAAGTGAACAAATGCTAGAGGACCATAAAGATGTTCATAAGGGTAACAAGAAGAAGCATCAATGTACAGTGTGTAGCAAGCTGTTCGTGATGTTGTGTACTCTGAAGGAGCATATGAGGACGCATACTGGAGAGAAGCCGTTCTTGTGCTCGCAGTGCGGCCGAGGGTTCAGCCAGAAGACTAATTTAGCACAGCATATGCGGCGCCATCAGGGCTTGAAGCCCTTTAAATGTGAAAACTGTGagaaaagATTTGTTTCAAAAGGTGAACTCGACGCTCACAACAGGAAGCACAGCGGCGCGCATCCATTCGTGTGCGACGACTGTGGCAACGGGTTCACAACATCCAGCGCCCTCGTCAAACATCGCCGCATACACACTGGTGAAAAGCCATACTTATGTGACCTGTGTCCTATGAGGTTTGCTGCCTCAGGGACTTTGAAGAACCATCGGAGAACTCATACCGGTGAACGGCCATTCCAATGTTCGTACTGTGAGAAGGCATTCGTCCAACGAAATGACTTGATCTCTCATATACGCTGCCACACCGGTGAGAAACCTTACACTTGTGCCCAGTGCGGCCAGTCGTTTAGAAAGGCAGCGGCTCTGAAGACCCATGTGAAGATGCATGCGAAGGAGGCGGCCGGCATGATGCAGGGCGTCATGTTGAATGGTATGCAGTGTGCTGAGCAGTGA
Protein Sequence: MEISVHSFEKICRICLIECTDMKSLFSKTDDEERNLLEILEYTANINVHIEDNLPKQVCCECQDVMCKADAFKRRCRESEKILNNLCEFGIQKKETQTSNDSDYCIKHENGDVNDQLDIDNSFPPNDAGKDSFDVKNGGLFKVIAVYPAGETSIGNIDTNVSDNCAIHVKVEAVNKYEDDTDFSNHFNDAEDTSYSEENSDKKLKTFHQCNCGLIVSSIDKLKSHVKLGNCKQKKVKQKLTKKVAKPNKVCSNDYDKVPSILTTWEDHQQTRQNEHIDNTEPLECLLCLKTFKTKALLAAHKHEKSEKREFFQCSLCLRRFKNKKSLSAHIQRHKETDNIKHVCEVCKREFKYKAFLENHIITVHSKKRGYSCDVCSQSFSSEQMLEDHKDVHKGNKKKHQCTVCSKLFVMLCTLKEHMRTHTGEKPFLCSQCGRGFSQKTNLAQHMRRHQGLKPFKCENCEKRFVSKGELDAHNRKHSGAHPFVCDDCGNGFTTSSALVKHRRIHTGEKPYLCDLCPMRFAASGTLKNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGEKPYTCAQCGQSFRKAAALKTHVKMHAKEAAGMMQGVMLNGMQCAEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -