Basic Information

Insect: Trichoplusia ni
Gene Symbol: -
Assembly: GCA_003590095.1
Location: NC:9503367-9513053[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 0.0001 0.0052 16.9 1.4 1 23 201 223 201 223 0.98

2 30 0.00075 0.038 14.2 0.6 2 19 252 269 251 271 0.94

3 30 2.5e-05 0.0013 18.8 0.2 2 23 301 323 300 323 0.96

4 30 3.7 1.9e+02 2.6 0.1 2 13 340 351 339 357 0.85

5 30 0.00046 0.023 14.9 1.7 1 23 370 393 370 393 0.97

6 30 0.0026 0.13 12.5 0.5 1 23 413 435 413 435 0.95

7 30 0.0011 0.058 13.6 0.8 2 21 473 492 472 493 0.93

8 30 0.0034 0.18 12.1 4.2 2 23 535 557 535 557 0.97

9 30 0.0018 0.094 13.0 0.6 1 23 607 630 607 630 0.97

10 30 0.015 0.75 10.1 0.1 1 23 683 705 683 705 0.97

11 30 7.4e-05 0.0038 17.3 5.4 1 23 716 738 716 738 0.98

12 30 0.022 1.1 9.6 0.4 2 23 750 771 749 771 0.96

13 30 0.0025 0.13 12.6 1.4 1 23 781 803 781 803 0.98

14 30 0.023 1.2 9.5 9.0 1 23 832 854 832 854 0.96

15 30 0.00028 0.015 15.5 3.1 1 23 865 887 865 887 0.98

16 30 1e-05 0.00051 20.1 0.5 1 23 895 917 895 917 0.98

17 30 0.00026 0.013 15.6 0.3 2 23 937 959 936 959 0.97

18 30 1.1 57 4.2 1.0 1 23 977 999 977 999 0.91

19 30 0.13 6.6 7.2 5.0 1 23 1006 1028 1006 1028 0.98

20 30 0.11 5.8 7.3 3.1 2 23 1039 1061 1038 1061 0.95

21 30 0.0083 0.43 10.9 0.2 2 23 1084 1105 1083 1105 0.95

22 30 1.2 63 4.1 3.1 2 23 1148 1170 1147 1170 0.95

23 30 0.00062 0.032 14.4 0.8 1 23 1185 1207 1185 1207 0.96

24 30 3.2 1.6e+02 2.8 3.7 5 23 1217 1235 1214 1235 0.94

25 30 0.012 0.61 10.4 0.8 2 23 1246 1268 1245 1268 0.95

26 30 0.21 11 6.5 4.5 2 23 1285 1303 1285 1303 0.92

27 30 0.42 22 5.5 1.6 2 22 1307 1327 1306 1327 0.93

28 30 0.28 14 6.1 1.2 2 23 1376 1397 1375 1397 0.93

29 30 0.0026 0.13 12.5 1.3 2 23 1408 1430 1407 1430 0.97

30 30 2.3 1.2e+02 3.2 2.1 2 20 1468 1486 1468 1488 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	0.0001	0.0052	16.9	1.4	1	23	201	223	201	223	0.98
2	30	0.00075	0.038	14.2	0.6	2	19	252	269	251	271	0.94
3	30	2.5e-05	0.0013	18.8	0.2	2	23	301	323	300	323	0.96
4	30	3.7	1.9e+02	2.6	0.1	2	13	340	351	339	357	0.85
5	30	0.00046	0.023	14.9	1.7	1	23	370	393	370	393	0.97
6	30	0.0026	0.13	12.5	0.5	1	23	413	435	413	435	0.95
7	30	0.0011	0.058	13.6	0.8	2	21	473	492	472	493	0.93
8	30	0.0034	0.18	12.1	4.2	2	23	535	557	535	557	0.97
9	30	0.0018	0.094	13.0	0.6	1	23	607	630	607	630	0.97
10	30	0.015	0.75	10.1	0.1	1	23	683	705	683	705	0.97
11	30	7.4e-05	0.0038	17.3	5.4	1	23	716	738	716	738	0.98
12	30	0.022	1.1	9.6	0.4	2	23	750	771	749	771	0.96
13	30	0.0025	0.13	12.6	1.4	1	23	781	803	781	803	0.98
14	30	0.023	1.2	9.5	9.0	1	23	832	854	832	854	0.96
15	30	0.00028	0.015	15.5	3.1	1	23	865	887	865	887	0.98
16	30	1e-05	0.00051	20.1	0.5	1	23	895	917	895	917	0.98
17	30	0.00026	0.013	15.6	0.3	2	23	937	959	936	959	0.97
18	30	1.1	57	4.2	1.0	1	23	977	999	977	999	0.91
19	30	0.13	6.6	7.2	5.0	1	23	1006	1028	1006	1028	0.98
20	30	0.11	5.8	7.3	3.1	2	23	1039	1061	1038	1061	0.95
21	30	0.0083	0.43	10.9	0.2	2	23	1084	1105	1083	1105	0.95
22	30	1.2	63	4.1	3.1	2	23	1148	1170	1147	1170	0.95
23	30	0.00062	0.032	14.4	0.8	1	23	1185	1207	1185	1207	0.96
24	30	3.2	1.6e+02	2.8	3.7	5	23	1217	1235	1214	1235	0.94
25	30	0.012	0.61	10.4	0.8	2	23	1246	1268	1245	1268	0.95
26	30	0.21	11	6.5	4.5	2	23	1285	1303	1285	1303	0.92
27	30	0.42	22	5.5	1.6	2	22	1307	1327	1306	1327	0.93
28	30	0.28	14	6.1	1.2	2	23	1376	1397	1375	1397	0.93
29	30	0.0026	0.13	12.5	1.3	2	23	1408	1430	1407	1430	0.97
30	30	2.3	1.2e+02	3.2	2.1	2	20	1468	1486	1468	1488	0.93

Sequence Information

Coding Sequence: ATGGCTCTCAAGCTCGGAAAATGCAGGCTCTGCCTCAAGCTCGGCGACTTCTACTCCATATTTACGGTGGACAATGCCTTGCAGCTTGCGGAGATGGCTATGGAATGCGCCCGAGTGAAAATCTACGATGGAGATGGGTTGCCAGACAAAGTGTGCTCAGAGTGCATACAGAAACTTAGCAGCGCATACATCTTCAAGCAGCAGTGCGAGCGGGCCGACCAGGAGCTACGACGCAACTATGTGCCGCCACCAGGGTTTAGTATCAGCCCTACACCACCAACAAGACAAAGCAGCGATTCCGCTTTTTCGAATCATACCGATAGCTCCAACCTCACCAAACAAGCGTCTTCCTTCGAAGAAAAAGAATCTCCTATCACCAAAACTAGGAAGCGCAGCATTGACAGCGGCGACAATGGTTCAGTTGACACATCCAGCGACTATCGACCGAGCGGCTCCAAACGTGTTGAGGAATTGAGGAGGTCCCAGAAACGACCAAAGATGCAGTCCAGCAACACGTCGCAAGCGGACTCGGACTACGAAGACAACAGCGCCTCATACATGGCAGAAACTGACTCCGACGAACCCCTCATCAACAACAACTTTAATTGCAAAAGATGTCCTAGACAATTTACCAGCCGAAGGAGTCTCGCCAACCACGTCAGAATTCACGAAAAGAAAGACGGTCTCGAGGACAATATCGTGGTCGAAATACCGCAGAAGGTAGAAGATGCGCCCGACTCAGAGGAGAAACTAAGCTGTAACAAATGTGGAAAGAccttcaaattgaaaattatgctGAATAGGCATTTCGATGGATGTGGTAAAATTCCCGCCAAGTCACCACAGAAAGAGCTGCTCGTTTCCTTAGAACCTATAGATGGAATGGCGAACCGCAATATCACGTGCGAAATATGCACCGCTAAGTTCAAAACAGTCGATAATTTGGAAAAGCACATGAAAGTTGTACATGCCGCAGTTTTGAAACGGGAAAAACGTGAGAATCCGAAGGTTCCAGTTCCATGCCTCTACTGCCAAAAGATGTTCGATGACTATTACGCTCATAGCTTGCATTTCAACGATTGTCCGCAAAAGGACGAATCTTTACCATACGAATGTCCAGTTTGTAAAAAGATTACTTCGAGAAAAACATCATATTTCCAGCACCTGAAGAACATGCACTTTGAACCACGTTCCTACCTTCTAAACACTTCCGTGGAGGCGGAGCCTGAGCCTTACCATGAATGTAGGATGTGCAACAAAAAACTTCCTTCACAAGATTTGTTGATCAAGCATTTAGCGGCACACATGTCGAATATTGAAGACAACGATATCGGCGCTGATAACGAGTCCCGTACCAGCACAATTGATGATTCTGCATCAATCCAATCGATACAAAGCAATACTCCGGGATGTGTAAAATGTTCGAGATGTGATAAAGAATTCAAATACAAGAAAGCTCTTCAAACTCACGAAATGAAATGTACAGAGGTGCCGATCGAAGTGAAGACCGAGCCCCCCGACAAGCCGTCGACGAGCCTGCTGAGCGAGACCACGTCGCGCTGGAAGTCCGAGTCCGAGTCCAGCCAGGACGAGGACGACAACACGTGCGACATCTGCGAGAAGCAGTTCTCGTACCGCCGCCTGCTGCTGCACCATAAGAAGACCAAGCACAACATGAGCTCCGGACACAAACGCGCCAAGATCTACCTCAAGGACTGCAAGGTCCGCTGCATGATCTGCGACCTCGAAATGAAAGTCGGCGATATAAACGAACACAACCAAACGCACATATCTAAAAACATGAAACCCCGTAATCTCTATACGTGCGCTGAATGCGAGGATACCTTCAAAAGCTGTTCAGCGCTCGCTAACCATATAAAACTGATACACAGGCTAAACCAGAAGAAGCTTGAGGTTGGCGTCAACCCGTCGGATTTTTGTGAAGTCGTTGTGACAAAGGCGGAACCCCTGGACTGGATCCAGAGTCACAACGACTTTGGAGAGGTTCCGGGTGCGGAGACCAAGCCACTCGTAGACCTGAGCGGCTTCACATGCCCCATCTGTGCCAAGAAGATGCCAACACTCATATCTTTGAAGCGACACGTCAACTGGCATTCAAATGTTGGAAATAGTATCGAAAAGAAATATGAGTGCCCTGTCTGCAATGAGTCATTTAGATTCCAGTGCCACTACAAGATCCACATGCGGCAGCACTACCACGACACGTCGCTGGACCCGAAGCACCTGACGTGCGGCGTCTGCGGCCGCGTCAGCAAGCACCTCCGCGCCGCGCAGGCGCACATGAACTTCCACAAGCAGACGCGCTTCCAGAACAAGGACTACCAGTGCTCCATCTGCGAGCGGGTGTTCCAGCACAGGAAGGTGTACCTCTCGCACATGGCCATCCACTACAAGAAGGGGGACGTCGTCCACAACACCATCGTGGGCGACGTCTTGCCAAACACGGCCGACAGAAACGTGTTCGACGGCACCCACACCTGCCATCACTGCGGTAAAATCTGCGATTCAGAAACCTCTCtaaaacatcatttaatttgGCACACGTCCAAGACTTTCTTGTACGGCGCACGACACGAGTGCACTATATGTAAAGTCAagttcacaaacaaaaaaagactaGAGCTTCACATCAGATCCCATTACGAAGATGAGAACGGACCCTACAAATGCACCATCTGTGGTAAAGGGTACACAGACGAAGGCTACTTCCAAAGGCACGTCAAAGGACACAACTTTGATCACCAATCTCACAAAAAACGAATAGAAAATTTTAGAAAGGATAAAGTCAAGTGTCCAATATGCTCTCGGTTTTATCCTGACTTAGTTAAGCTTATTCGTCATTTGCGGAGGACACATCCCGAGAGTAAGATGATCAAGAGTGACCCAGACGCGCCGCCTCAGACATACTTTTCGTGTAAATTATGCGCCAAAGTGTTCCTCGATGAGCGTAGGCTACAACACCATGAGGAAGCTCACCTTAGGAAGCCAGAAttctttaaatgtaaattttgtggAAAGAAAACTATATCTCTTAAGAATCATAGACTTCACATAAAGAGCCATCTGACGCAGAAGCATTTGGACAATCCCCTCAAGTGTCCTCACTGCGAGGATACCTTCGTGAAAGGCTACGACCTGCACCATCACCTGCGCGACGCGCACGACATCAACGAGACGTGGATCGCTGAACGCACCGAACAAACCCTCAATGGGCCGCTCAAAGACCTGCAGTGCTCTATATGTATGAAAGTTCTTGCGAGCAAAGGTAACTTCGAGCGACACATCGACTATCACAACTCGTTGAGGTGCAACTACTGCTTTGATTACTTTAGCTCACTTCGATTTCTGGAAGGTCATCTAACCTTTTCGtgtgaaaagaaaaaacttcTCGGAGACACCGAAGTTTATCCCAAGAAAGTGAAATGCGACATATGTTACAAAGCATTCCACGTTCAAGTCAAACTGGACTGTCACTTGCGCACGCAACATGGAATCAAGGTAAACAGAGAAGCGTCCGCAGGAAAACAAGAGTTCGTCTGCGATTATTGCTTTAGAGTCTTCGAGAATGAGTACGCGTTGACTACTCACAAAATTTACCATCGTACTGTCGGCTACTATGGATGCATTTACTGTAATAGAAAGTTTAATACTTTGACAGTCTACAGAAAACACAAAAACCACCATTTATCACAGCTTAATGTGGATAACCCTACTAAATGCGAACACTGCGACGAAACGTTCGTAGCGTTTAGAGAAATGATATACCATATGAGAGATGTGCATGGTGATGACAAGGAGTGGGTCACGGAGCCGAAGGAGTCCATCGAGGAGACCTGCCCCATCTGTCACAAAGTGTTCTACAACCTGCACAAACATCTGAGCTACCACGAGGAGAACAAGTGCAAGAAGTGTGGTGAGTACTTCTACTCCATGATAGACTTCGATAATCATCTGTGCACCATCGAAAGCGATGATGAGGGCATGCCACACGCGGGTACAGATGATGCCGCCAAATATGAAGAGTGCAAGTTCTGCTTCAAACCTATTACAAAGAAGAACTCCAAAATCAAACATGATAAAATACATAGGGGCTCTGGATCCATTTCCTGTAGATTCTGCAAACTTAAGTTTAAGACTATGGATGCGTTCAATATACACGCTTTTTCACACCGAAGTAggaaatacaataaacaacCCATCAAATGTAggaaatgtaatgaaaaattcGTTAAATATGGACCATTTATGAAGCACATGAAAACGGTTCATAAATGCATGAAAAAAATGCACTACAGGGCCATCGTGAAACCAGAGAAATGTATCGTTTGCGGAGACGACTTCCCGAACCTCCACAACCATTACCGTGCTCATTTGTTGAACCAGTGCCAGGCTTGCCGCAAGTATTTTACGTCTTATAAATTATTCACTTGGCACGAATGTGATAAAGAAGACGCGGACCCATCGAAAGTGTTCACGTGTGACGCGAACTTGAACGAACTAATAAACACGTACGTTCCAAAAGATGAGAAGGACGACGAGAAGTACTACGGACACAGTGAGGGGGAGGAGGACGAGGACTACGTGGACCCGCAGGTGTTCGCTGACGAGGAGAGCCAGGACAGCAAGGACAGCAAGTCGCTGCACATGATGGTGCAGTCGCCGATCATATCTGACGTGCTGTCGTTGTACAAGCCGGAAACCAACGGTGACGTCGACGACGACGTGGTCAACATCACCGATGATGACTCCGTTGACATTGAGCACGCTCCACCGGTCGTAGTCATCGATGATGATTAG
Protein Sequence: MALKLGKCRLCLKLGDFYSIFTVDNALQLAEMAMECARVKIYDGDGLPDKVCSECIQKLSSAYIFKQQCERADQELRRNYVPPPGFSISPTPPTRQSSDSAFSNHTDSSNLTKQASSFEEKESPITKTRKRSIDSGDNGSVDTSSDYRPSGSKRVEELRRSQKRPKMQSSNTSQADSDYEDNSASYMAETDSDEPLINNNFNCKRCPRQFTSRRSLANHVRIHEKKDGLEDNIVVEIPQKVEDAPDSEEKLSCNKCGKTFKLKIMLNRHFDGCGKIPAKSPQKELLVSLEPIDGMANRNITCEICTAKFKTVDNLEKHMKVVHAAVLKREKRENPKVPVPCLYCQKMFDDYYAHSLHFNDCPQKDESLPYECPVCKKITSRKTSYFQHLKNMHFEPRSYLLNTSVEAEPEPYHECRMCNKKLPSQDLLIKHLAAHMSNIEDNDIGADNESRTSTIDDSASIQSIQSNTPGCVKCSRCDKEFKYKKALQTHEMKCTEVPIEVKTEPPDKPSTSLLSETTSRWKSESESSQDEDDNTCDICEKQFSYRRLLLHHKKTKHNMSSGHKRAKIYLKDCKVRCMICDLEMKVGDINEHNQTHISKNMKPRNLYTCAECEDTFKSCSALANHIKLIHRLNQKKLEVGVNPSDFCEVVVTKAEPLDWIQSHNDFGEVPGAETKPLVDLSGFTCPICAKKMPTLISLKRHVNWHSNVGNSIEKKYECPVCNESFRFQCHYKIHMRQHYHDTSLDPKHLTCGVCGRVSKHLRAAQAHMNFHKQTRFQNKDYQCSICERVFQHRKVYLSHMAIHYKKGDVVHNTIVGDVLPNTADRNVFDGTHTCHHCGKICDSETSLKHHLIWHTSKTFLYGARHECTICKVKFTNKKRLELHIRSHYEDENGPYKCTICGKGYTDEGYFQRHVKGHNFDHQSHKKRIENFRKDKVKCPICSRFYPDLVKLIRHLRRTHPESKMIKSDPDAPPQTYFSCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHRLHIKSHLTQKHLDNPLKCPHCEDTFVKGYDLHHHLRDAHDINETWIAERTEQTLNGPLKDLQCSICMKVLASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLTFSCEKKKLLGDTEVYPKKVKCDICYKAFHVQVKLDCHLRTQHGIKVNREASAGKQEFVCDYCFRVFENEYALTTHKIYHRTVGYYGCIYCNRKFNTLTVYRKHKNHHLSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWVTEPKESIEETCPICHKVFYNLHKHLSYHEENKCKKCGEYFYSMIDFDNHLCTIESDDEGMPHAGTDDAAKYEECKFCFKPITKKNSKIKHDKIHRGSGSISCRFCKLKFKTMDAFNIHAFSHRSRKYNKQPIKCRKCNEKFVKYGPFMKHMKTVHKCMKKMHYRAIVKPEKCIVCGDDFPNLHNHYRAHLLNQCQACRKYFTSYKLFTWHECDKEDADPSKVFTCDANLNELINTYVPKDEKDDEKYYGHSEGEEDEDYVDPQVFADEESQDSKDSKSLHMMVQSPIISDVLSLYKPETNGDVDDDVVNITDDDSVDIEHAPPVVVIDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00327258;
90% Identity: iTF_00327258;
80% Identity: -