Tni011516.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichoplusia ni
Gene Symbol
-
Assembly
GCA_003590095.1
Location
NC:5554688-5565690[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 4.7e-05 0.0024 18.0 7.9 1 23 194 216 194 216 0.98
2 13 5.8e-07 3e-05 24.0 0.2 3 23 230 250 229 250 0.98
3 13 2.6e-05 0.0013 18.8 3.1 2 23 259 280 259 280 0.98
4 13 0.00021 0.011 15.9 1.6 3 23 288 308 286 308 0.95
5 13 1.6e-05 0.00084 19.4 3.1 1 23 314 336 314 336 0.98
6 13 1.4e-05 0.00074 19.6 8.4 2 23 343 364 342 364 0.97
7 13 1.3e-05 0.00069 19.7 0.7 1 23 370 392 370 392 0.97
8 13 1.4e-06 7.1e-05 22.8 1.1 1 23 398 420 398 420 0.99
9 13 0.0007 0.036 14.3 1.2 1 23 426 448 426 448 0.98
10 13 0.0017 0.087 13.1 0.3 1 23 454 476 454 476 0.96
11 13 1e-05 0.00053 20.0 1.8 1 23 482 504 482 504 0.98
12 13 2.1e-05 0.0011 19.1 2.2 1 23 510 532 510 532 0.98
13 13 0.00017 0.0088 16.2 2.9 1 23 602 624 602 624 0.99

Sequence Information

Coding Sequence
ATGGCTGCTCCAAATAAACCCTTGAAGTTTGACAAAATATGTCGAGCTTGTTTAGAGATAAAAAAAGACATGCGACCTCTATTTGAACAACTGACTGCGACGATGCTGATGGGCATATCGAAAGTGCAGGTGGCAGTTGGCGATGGTTTGCCGCCGCAGCTGTGTCTGCAATGCGTGCATCAGATATCCCGCTGCCACGCCTTCAAAGAGCTCGTGGAGAGGAATGACGTCACTCTTCGTGAACATGCCAAGCGGCTCGCCGAGGAAGCTTATAATAGAGAGAGGGAAGAGAAAGAGAAGCTGTTAAGTCTGAGCTGCCCGGAGCAGTCTTACATGCAGTATATGGAGGTGCCCATGTCGAACTCCAGTCAGATACTGGACGGGTTCTTCGCGGAGACGCCCCAACCAACACCTACTGCGGCAGAAGTCGAGATAAAGGTCGATTACGAAGttgaaaagATCACAACTACAGAAATAGCGACAACCACTACTAAAGACAAGGAAGGCCTGAACTCGGATGAGGAGAACTACTTGCAGCTGGTACTGTTCCAAGCGACGTCGACCACGTCGCCGGGCAGGCACGTCTGCAACCTCTGCCACAAGGAGTTCAAGCACTCTCGCTGGCTGAAGCAACACATGCGGTCTCATACCAACTGGATCAAGGCGAATTGCAAGAAACCTCCCATGTGCCCGATATGTGATAGGACTTTTAAGGGTCCCGGCATGTTAAAAATGCACATGCGTACCCACGAGCAGCGTACTCCCAAACAGCCGACGTGCTCAGTGTGTCAACGTACATTCTCAACTAAGACACTGCTGTACCGTCATCGACAAACGCACTTCGAACAGAAAACCCACCTGTGTACAGTCTGTGACAAACGGTTCTACAGCGGATACGCCCTGCGGTCACACATGGCGAGACATCGAGGGGAACGGCCCTACGTCTGTTCAACTTGCCATAAGAGTTTCTATAACCCTACGGATTTGAAGGTCCACTTCCGCCTGCACACCGGTGAGAAGCCGCTGAAGTGCTCGGAATGCAACAAGACGTTCCGGCGCCACTCGACGCTGTGCCAGCACATGAAGAAGCACCGCGGCATTCGGAACCACATCTGCAATGTCTGCAACAAGGCCTTCTATGAGATCTCCAAACTTAACGCACATATGAGAGTGCATACAGGCGAGCGTCCGTACGAGTGCCAGTACTGCGAGCGCCGCTTCGCGCAGCAGTCGGCCCTCATCTACCACCGCCGCACGCACACCGGCGAGAAGCCCTTCTCCTGCAAGCTCTGCTCCGCCAAGTTCACCACCTCCTCCGCCAGGAACAACCATCTCATCACACATACTGGGAACAAGAAGTTCGTGTGCCCGGTGTGCTTCAAGGGCTGCAGTTCCCGCGCGGAGCTGCGCGGTCACGCGGCGCGCCACGCGGGCGACAAGCTGTTCGAGTGCGAGCTGTGCCAGCAGCGGTTCAGCTCCGCCTCGCACCTGGCCGTGCACCGCCGCTACCACTCCGCCGAGAAGAAGTACCACTGCCGCGTCTGCGGGAAGGGTTACGTAGAAGCAAGTTCATATAAGAAGCACATGAAGACTCACGAGAAGTCAGAGACGGAGTCGTCCACATCAGAGAACAGTGGCGAAGCCCCCGCCGCCAAGACTGACGCGCAGGGGATAGCGGAGCAGAGTGCTGTCGTCGAGGATATAGGGGAGGTTCAGGTACAAGTTCAAGGCCAAATGCAGGAGTCCCAGCAGGTCCTGCAGGTCCAAGGCCAAGCGGAGGTGACTCCATCAGGCCAGAAGAAGTACAAGTGTGGGCTGTGCGAGAAGACATACATGTACCTACATACACTCAAGAAACACATGCTTGTGCATACACAAGACCGAGGCCGCAACTCAGAGCCACTAATATTCCTACACCAACAACAACCACAGCAACAGCAACAGCCACAGCAGCAGCCacagcagcagcaacaacacCCGCAACAGCTgcagcagcaccaacagcagcAAGTCCAGCAAGTGCAACAAGTTCAGCAAGTTCAACAAGTTCAGCAGGTGCAACACCACCAGCAACAGCAACAGATGCAGCAACAAGTGTTGCAGGTCGGCAACGTGCAACAGCTCGCTGTGCCGATACATGCGCAACATGTACAGCAAGGGATCACTGTGTCTGGAGTACAGGCGAGTCAGCACCCGTACCCCGTGATCTCGTCGGTGCAGTCGCTCCAGCTGCAGCAGACTCACCAGGTTAACTCGCAACAGCCGCAACAGCTTCAGGTGCAGACCATACAGATTCACCCGCAACACCAACCGATACAGATACACGCGGTGGGCGTGCAGCAAGTACAACAGCAACAGCTGCATGTAGCTACTTCCTCATGCCAGACAATGCTACCTAATATACTACAGCTGCAACCGGGCACGGTGGCGGTGTCGGGGCTGGCGCAGCCGGAGCTGGGCGGCGTCACGCACCGCATCATCCTGCAGCCgcagcccgccgccgcgcacccCGCCGTCTACACCATACACCACTGA
Protein Sequence
MAAPNKPLKFDKICRACLEIKKDMRPLFEQLTATMLMGISKVQVAVGDGLPPQLCLQCVHQISRCHAFKELVERNDVTLREHAKRLAEEAYNREREEKEKLLSLSCPEQSYMQYMEVPMSNSSQILDGFFAETPQPTPTAAEVEIKVDYEVEKITTTEIATTTTKDKEGLNSDEENYLQLVLFQATSTTSPGRHVCNLCHKEFKHSRWLKQHMRSHTNWIKANCKKPPMCPICDRTFKGPGMLKMHMRTHEQRTPKQPTCSVCQRTFSTKTLLYRHRQTHFEQKTHLCTVCDKRFYSGYALRSHMARHRGERPYVCSTCHKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHICNVCNKAFYEISKLNAHMRVHTGERPYECQYCERRFAQQSALIYHRRTHTGEKPFSCKLCSAKFTTSSARNNHLITHTGNKKFVCPVCFKGCSSRAELRGHAARHAGDKLFECELCQQRFSSASHLAVHRRYHSAEKKYHCRVCGKGYVEASSYKKHMKTHEKSETESSTSENSGEAPAAKTDAQGIAEQSAVVEDIGEVQVQVQGQMQESQQVLQVQGQAEVTPSGQKKYKCGLCEKTYMYLHTLKKHMLVHTQDRGRNSEPLIFLHQQQPQQQQQPQQQPQQQQQHPQQLQQHQQQQVQQVQQVQQVQQVQQVQHHQQQQQMQQQVLQVGNVQQLAVPIHAQHVQQGITVSGVQASQHPYPVISSVQSLQLQQTHQVNSQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPGTVAVSGLAQPELGGVTHRIILQPQPAAAHPAVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01094252;
90% Identity
iTF_00327254;
80% Identity
-