Basic Information

Insect: Trichoplusia ni
Gene Symbol: -
Assembly: GCA_003590095.1
Location: NC:4068176-4077724[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.12 6.4 7.2 1.1 1 23 248 270 248 270 0.96

2 20 0.05 2.6 8.4 0.5 2 23 297 319 296 319 0.91

3 20 9.5e-05 0.0049 17.0 0.2 1 23 342 364 342 364 0.98

4 20 0.0015 0.076 13.3 2.5 1 23 368 391 368 391 0.91

5 20 0.015 0.78 10.1 1.1 1 23 396 419 396 419 0.95

6 20 0.28 14 6.1 1.4 1 22 425 446 425 448 0.82

7 20 1.5e-07 7.9e-06 25.8 2.7 1 23 455 478 455 478 0.98

8 20 0.0039 0.2 11.9 4.0 1 23 484 506 484 506 0.97

9 20 6.5e-07 3.3e-05 23.8 1.6 1 23 512 534 512 534 0.99

10 20 0.00015 0.0076 16.4 2.1 1 23 540 562 540 563 0.95

11 20 0.00084 0.043 14.0 3.2 1 23 780 802 780 802 0.98

12 20 0.013 0.64 10.3 0.3 2 23 829 851 828 851 0.95

13 20 0.00064 0.033 14.4 1.6 1 23 871 893 871 893 0.98

14 20 0.016 0.8 10.0 0.2 1 23 897 920 897 920 0.92

15 20 0.0011 0.059 13.6 1.3 1 23 925 948 925 948 0.91

16 20 0.053 2.7 8.4 0.4 2 21 955 974 954 977 0.89

17 20 6.9e-06 0.00035 20.6 4.9 1 23 984 1007 984 1007 0.98

18 20 0.04 2.1 8.7 2.3 2 23 1014 1035 1013 1035 0.96

19 20 2.1e-06 0.00011 22.2 0.3 1 23 1041 1063 1041 1063 0.98

20 20 1.2e-05 0.00061 19.9 2.0 1 23 1069 1091 1069 1091 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.12	6.4	7.2	1.1	1	23	248	270	248	270	0.96
2	20	0.05	2.6	8.4	0.5	2	23	297	319	296	319	0.91
3	20	9.5e-05	0.0049	17.0	0.2	1	23	342	364	342	364	0.98
4	20	0.0015	0.076	13.3	2.5	1	23	368	391	368	391	0.91
5	20	0.015	0.78	10.1	1.1	1	23	396	419	396	419	0.95
6	20	0.28	14	6.1	1.4	1	22	425	446	425	448	0.82
7	20	1.5e-07	7.9e-06	25.8	2.7	1	23	455	478	455	478	0.98
8	20	0.0039	0.2	11.9	4.0	1	23	484	506	484	506	0.97
9	20	6.5e-07	3.3e-05	23.8	1.6	1	23	512	534	512	534	0.99
10	20	0.00015	0.0076	16.4	2.1	1	23	540	562	540	563	0.95
11	20	0.00084	0.043	14.0	3.2	1	23	780	802	780	802	0.98
12	20	0.013	0.64	10.3	0.3	2	23	829	851	828	851	0.95
13	20	0.00064	0.033	14.4	1.6	1	23	871	893	871	893	0.98
14	20	0.016	0.8	10.0	0.2	1	23	897	920	897	920	0.92
15	20	0.0011	0.059	13.6	1.3	1	23	925	948	925	948	0.91
16	20	0.053	2.7	8.4	0.4	2	21	955	974	954	977	0.89
17	20	6.9e-06	0.00035	20.6	4.9	1	23	984	1007	984	1007	0.98
18	20	0.04	2.1	8.7	2.3	2	23	1014	1035	1013	1035	0.96
19	20	2.1e-06	0.00011	22.2	0.3	1	23	1041	1063	1041	1063	0.98
20	20	1.2e-05	0.00061	19.9	2.0	1	23	1069	1091	1069	1091	0.98

Sequence Information

Coding Sequence: ATGGAGGCAAATAAATCTGCGATATATACAACTTATGGAGAGTGTCGCTGTTGCCAAGCGAAAGGCCAACACAGAGATATGATGAAAGAATATTACTACAACGGTATACGAGAAGTATACTTCgatatttttatggaaagttttaatttatttCTATCAACAAATGTCCTACTAACCACTTTAATATGCTCGACGTGCGTGCAGCGACTCCGCGACGCGACGAGCTTCCGTATGATGGTCGTCAGTACTGAGAGACAGCTGCTGCAAGCTCTAGTTTCTGATGATAAAGCTACTGTGTTTGTTAATGTGCCGGTCGATGAGAATGCTCTAGAAGTTAAATTGGAGAAGCAGGCGGATGTAAAGGAGGAACTGAGCGAAATAGAACTAGAAGTTGGTGACTATGACTCGGATTATGTTGTTAGCGATTACGTGTCAGACACCCCAGAAGACAGGGAGGCGGCCTTGTTGCGCAGGTTCGCGCGCGACAAGCCGCCGCCCCTGCCCACGCGGGCAACGCTGCCGGATATATGCCCAGAGTACTGCAAACACTTGGATTTGTTACAGAATATAAAAGTTCTTCCGAAAACCATAATGAAGTTAATAGAGGATCAAGACAGACGCCGCTCGCTAACTGGGAGCCGCCGCTTGTTCATAACAGAGAAAATGGCGCACATGGTCAACGCGAGCACCCTCCTACTGCACTCCAACATTACTCCCTTCAGAAGCAAGAGTCGAACTGGCTTCCCTTGCTTCTTCTGCCGAAACATATTCGAAAACCTAGACAAACTGAAACTTCACACGAATGAACACAAAAAAACTGAAGTCAAAAAGATTTTGAGGACCTATGGCGCTGAGTGTTTAGTCGTTTACGTCGATATCACAGATTTAAAGTGCAATTTATGCGAAAAGAAACTTCAAAACCTAAACGAATTGAAAACTCATCTCGTTAATGTACACAAGAAGAAAATGCATCCGGAATTCACTGACAGAGTCATACCGTTCAAGTTGTCACAGTCAAGTGTTTATGAGTGTCAAATATGCGGCTTTAACTTCGAGACTTTCGGGTCCATTGAAAGGCATATGAACGTGCATTTCAGGAATTACGTGTGCAAAGAATGTGGGACCGGTTTTGTAACGAAATATAGGTTGAAAGTTCATTGTAAGAGTATGCACGCGGGAGGCAGTTTCCCCTGCGCGTCCTGCGGCAAAGTTTTCACAACGCTACAGAAGCACAACAACCATGTGAACACGGTTCACAAGTTGCTAAAGAGGTTTAAATGCACGAAATGTCCGGAACGATTTGCCGAGTACTTCAGAAGGCAGAAACATTTGGTCCAAGTGCACGGTGTAGCTCCcttacaatataaatgcaatgtTTGTGACAAGAGTTTCGATCGTCGCTATACTTTATCGAGACATATGAAAAGAGATCATTTAGAAGAACGTGACTTTCAATGTGAAATGTGTTCGTATAAATGTTTTACGAAGAATGAATTAAGAGTTCATATGGTTAAGCATAATGGGGAGAGGATTTATGAATGTTCTGTTTGCAAGAAGTCGTACGCGAGGAAGAAAACTTTGAAGGAACATATGAGGATACACAATAATGATCGGCGGTTCGCTTGTGCGGTGTGTGGGCAGGCTTTCGTTCAGAAATGCAGTCTTAAAGGGCATTTGAAGACGCATCATGTCGAGTTTAGTTTGcaAAGACCATACCCAGCAATTGGAAATTTCCCGTTGGACACCCAGCTGCTATCAACACACAATCGCATCAGTCCCTTAATATGCTCGACGTGCGTGCAGCGACTCCGCGACGCGACCAGCTTCCGTATGATGGTCGTCAGTACTGAGAGACAGCTGCTGCAAGCTCTAGACTGTGCAGTAGACAGTAAAGAGACCGTGTTTGTTGATGtgcTCGATGAATCAAGTGACAATAATCAAGACATCAAACCTGAATTGAAAAGTGAGAGTGGAACAGACTCGGATAGCTCTCAAGCGGAACAATTTGATGATCAGGAAGAATATGAATGTGATAGCAGCAAAGAGGTGGAAAACGAGGAAGAATATCTGGTGTCTGGAGAAGAAGCGTTGTTGTCTCGTTTCTCCAGTCCCCCGGCGCTGCCCACGCGATACTCTCTCTACAATATCTGCCCTGGATACGTGGAACATTTGAATAGGCTCAGAGACACGATAGTAACAGCGGAATCTCTACAGAGGCTGCTCAACAAACCTAAGACAACTCAATATGTGTCAGAGAAGCTAGCTCTAGCCATAAACGCGACCGCCATATTCGAATACAGCAACGCCGTTGCTTTtaaatcgaaaacaaaaaatggcTACCCCTGTTTCTAttgcagaaaaatatattccaatcACAATTTACTAAGAAATCACCAATCTATACATCctaaatcgattttatttaaattattaacgaaATATACGGCTGATTGTCTTGTAGTTTACGCCGAAGTCACTGATCTGAAATGTACAATTTGCGACACAGAAAtgtcaaatttaaatgaattaaaaacacatttaaaagaaatacataaaaagaaaatgtatttagaataTTCAGATCGAGTTATACCTTTCAAACTAAGCAATTTCGAATGTCAAATTTGTAGGTTATGTTTCGAAACTTTTGGCGCGGTTGAGAGGCACATGAATAAACATTATTCCAATTATATGTGCGAGGAATGTGGGGCGGGTTTTGTAACGAAACATAGGCTAGGAATCCATGCTTACATGTTGCATAGACAAGGTAGCTATCCCTGTGAAACATGCAAAAAGACTTTTCGAACGCAATTGAAGTATAAAATTCATTACGATGCCGTTCATCGgatgttaaagaaaaataagtgtCCGCAATGCCCTGAGAagtttattgattattttacaaGGCAGAAGCACTTAGTAGACGTGCATGGTGTAGAAccaatattatataaatgtaatgtatGTGATAAATCCTTTAATCGCAGGTACACTCTGTCTTTACATATAAAGAGATGTCATTTAGAACAAAAAGATGTAAAATGCCAGTTGTGTGTGTATTCTTGTTACACAAAGACTGAATTGAAAGAGCATTTAGTCAAACATGGAGGGATGAAAGAGTTTGAATGCGGTGTGTGTAGAAAGGCGTTCGCGAGAAAGAAGGCCTTGTTACAGCATATGCGGATACATGCGAACGACCGGCGGTTCTCGTGCAATGTTTGTGGTATGGCTTTCGTTCAGAAATGTACTTTGAAAGGGCATATGAAGACACATCAGGACATATGA
Protein Sequence: MEANKSAIYTTYGECRCCQAKGQHRDMMKEYYYNGIREVYFDIFMESFNLFLSTNVLLTTLICSTCVQRLRDATSFRMMVVSTERQLLQALVSDDKATVFVNVPVDENALEVKLEKQADVKEELSEIELEVGDYDSDYVVSDYVSDTPEDREAALLRRFARDKPPPLPTRATLPDICPEYCKHLDLLQNIKVLPKTIMKLIEDQDRRRSLTGSRRLFITEKMAHMVNASTLLLHSNITPFRSKSRTGFPCFFCRNIFENLDKLKLHTNEHKKTEVKKILRTYGAECLVVYVDITDLKCNLCEKKLQNLNELKTHLVNVHKKKMHPEFTDRVIPFKLSQSSVYECQICGFNFETFGSIERHMNVHFRNYVCKECGTGFVTKYRLKVHCKSMHAGGSFPCASCGKVFTTLQKHNNHVNTVHKLLKRFKCTKCPERFAEYFRRQKHLVQVHGVAPLQYKCNVCDKSFDRRYTLSRHMKRDHLEERDFQCEMCSYKCFTKNELRVHMVKHNGERIYECSVCKKSYARKKTLKEHMRIHNNDRRFACAVCGQAFVQKCSLKGHLKTHHVEFSLQRPYPAIGNFPLDTQLLSTHNRISPLICSTCVQRLRDATSFRMMVVSTERQLLQALDCAVDSKETVFVDVLDESSDNNQDIKPELKSESGTDSDSSQAEQFDDQEEYECDSSKEVENEEEYLVSGEEALLSRFSSPPALPTRYSLYNICPGYVEHLNRLRDTIVTAESLQRLLNKPKTTQYVSEKLALAINATAIFEYSNAVAFKSKTKNGYPCFYCRKIYSNHNLLRNHQSIHPKSILFKLLTKYTADCLVVYAEVTDLKCTICDTEMSNLNELKTHLKEIHKKKMYLEYSDRVIPFKLSNFECQICRLCFETFGAVERHMNKHYSNYMCEECGAGFVTKHRLGIHAYMLHRQGSYPCETCKKTFRTQLKYKIHYDAVHRMLKKNKCPQCPEKFIDYFTRQKHLVDVHGVEPILYKCNVCDKSFNRRYTLSLHIKRCHLEQKDVKCQLCVYSCYTKTELKEHLVKHGGMKEFECGVCRKAFARKKALLQHMRIHANDRRFSCNVCGMAFVQKCTLKGHMKTHQDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -