Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 5.9e-09 7.9e-06 25.2 0.0 3 43 12 52 10 53 0.93

2 3 0.21 2.8e+02 1.1 0.0 21 30 94 103 93 104 0.90

3 3 3.6 4.9e+03 -2.9 0.0 22 33 166 177 166 182 0.72

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	5.9e-09	7.9e-06	25.2	3	43	12	52	10	53	0.93
2	3	0.21	2.8e+02	1.1	21	30	94	103	93	104	0.90
3	3	3.6	4.9e+03	-2.9	22	33	166	177	166	182	0.72

Coding Sequence: ATGGCTAAGCGACGATACAAAACTTGGTCAAGTGACGATATGGAAAAAGCCCTCAGTGCTTATAAAGatggaagtttaaaatttaatgaaacttgtcgtgtatttaatattccaaaaccGACATTTCGGCGTCATTTAAAAGGATTGAATATGCACGAAGGAATTGGACGtccgaaatatttaacaaaagcaatGGAAGACGAACTAGTTAACCATATATTGGAATTAGAATCCAGATTTTTTGGCGTTACCATACGTGATTTACGCCACTTAGCATACCAATTAGCGGAAAAATATGGTTTGCCTCACAAATTTAATCCGGAAACTAAACTAGCTGGGTGGAAATGgtactataaatttttaaaaacccATCCTCAAATATCTTTAAGGACTCCAGAACCGACATGCATGGCTCGCTGCAaaggctttaacaaaaaaaccgttatggagttttttgataaatacgaAGCTCTTCTTGATGAAGGAAAATTTACGGCCCAGCAAATTTACAACGTGGACGAGACTGGCTTGAGTACAGTGCATAAGCCTCAAAAAGTTCTAGCTCTTAAGGGTAAACATCAAGTTGGTGCCGTTACTAGTGGTGATCGGGGCTTGAACACAACATGTATCTGCTGTATGAACGCTGCCGGAGAATTCATTCCACCTATGCTAATATTCAAACGTAAAAGAATGACGGACGATCTTAAAAGAGGAGGACCACCAAATACAGTATACACTTGCTCTGAGAGTGGCTGGATAACTTCTGAGTTATTCGTCGATTGGTTAAAGCATTTCATAAAGTCTGTAAAGCTGCAAATATCCAAAGAAAAAACAGGTTCTTCTCATTTTAGATGGGCATTCCACGCATACTAA
Protein Sequence: MAKRRYKTWSSDDMEKALSAYKDGSLKFNETCRVFNIPKPTFRRHLKGLNMHEGIGRPKYLTKAMEDELVNHILELESRFFGVTIRDLRHLAYQLAEKYGLPHKFNPETKLAGWKWYYKFLKTHPQISLRTPEPTCMARCKGFNKKTVMEFFDKYEALLDEGKFTAQQIYNVDETGLSTVHKPQKVLALKGKHQVGAVTSGDRGLNTTCICCMNAAGEFIPPMLIFKRKRMTDDLKRGGPPNTVYTCSESGWITSELFVDWLKHFIKSVKLQISKEKTGSSHFRWAFHAY

Sequence clustering based on sequence similarity using MMseqs2