Tsar000068.1
Basic Information
- Insect
- Trichomalopsis sarcophagae
- Gene Symbol
- -
- Assembly
- GCA_002249905.1
- Location
- NNAY01001059.1:25340-33416[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.055 5.8 7.4 0.4 1 21 173 193 173 194 0.94 2 19 4e-06 0.00043 20.4 0.6 1 22 241 262 241 262 0.96 3 19 0.029 3.1 8.2 0.9 2 19 305 322 304 324 0.95 4 19 0.024 2.6 8.5 2.5 1 23 331 354 331 354 0.98 5 19 0.88 94 3.6 0.6 2 12 427 437 427 438 0.88 6 19 0.18 19 5.7 1.7 1 23 437 460 437 460 0.95 7 19 0.0013 0.13 12.5 1.5 1 22 465 486 465 486 0.95 8 19 0.00096 0.1 12.9 3.2 1 23 493 516 493 516 0.96 9 19 0.00029 0.031 14.5 0.4 1 21 523 543 523 544 0.95 10 19 0.0018 0.19 12.0 1.1 1 23 918 941 918 941 0.97 11 19 2.3 2.4e+02 2.3 0.4 1 11 974 984 974 987 0.91 12 19 0.027 2.9 8.3 0.8 2 23 1003 1025 1002 1025 0.95 13 19 0.0069 0.74 10.2 0.0 1 23 1094 1119 1094 1119 0.94 14 19 0.0039 0.41 11.0 0.6 1 21 1126 1146 1126 1147 0.96 15 19 1.2e-05 0.0013 18.8 0.5 1 21 1159 1179 1159 1180 0.95 16 19 0.00039 0.042 14.1 2.3 2 21 1193 1212 1192 1213 0.93 17 19 3.1e-05 0.0033 17.6 0.2 1 20 1243 1262 1243 1264 0.93 18 19 6.9 7.4e+02 0.8 4.6 1 21 1273 1293 1273 1296 0.95 19 19 0.27 29 5.2 0.2 2 20 1306 1324 1305 1326 0.93
Sequence Information
- Coding Sequence
- ATGGCAACAATCAATGACGCTTTCACCGAAGGACATAGGTACACAcgCTCCATTGCTGCcaagttttacaaaaaaatggaCATCGACGTAGATAACACTTTACCGCTAACGAACAACGGAcctaacaacaataataaagaaCAATTCTGCTTGCAAGAGGAGATAATAGATTTACACGAATCGGAAGGCTCAgacATTGAAATCGTGGCCGTAAGCAAAAGTGTTGCCGAAGGAAGGACCAAAAATAAACTGAAGGCATTCATACGAAGTCGACGAAAGACAAAAATTTACGTCAACTCGGATGGCGATATCCcaaatcaattaaaaacatttaacAGATCGATAGATCGTTGTAACTTTAAAGGCCTACAAAACACACCGAAAAGAAAAGTTCCTAATCGAAACGAATCCTTGAGCTCCATCATTCTCAATTGTCCGCGATGCAACATAACGAAAACGGTATTTTCCACGACTTTAGGAAATATTACTTGCAAAGAATGCAGTGTCAATATGACGTACGTCTGCAACAAGTGCAATCTCCGATATCCGACAATGCTAGCATTGTACAGACACAAAAAACTGCAGTGCGAAAGGACTGTCAAAGCCAAAACCCTGCAACCGAAGACTATGTTCATTCTCAAGTGTTCCAGATGCAATCTATCTCAGAAGATTCAGCGGATAAAATTGAGCAAATGCCTCTCCTGCTGCATCGACATGCATTACGAATGCGTGGTCTGCGGCAAGAACTTCAATACATACTCTAATTTGTATACCCACATGAAACGTCGTTGTCAGCCGAAGTGCCGTACGTATTACTGCAACGAGTGCAGCTTCAACTGCACCTGCGAGTCCATACTCGTTCGACATCTCAACAAGCATCATCCGGGACTCTTTGTCCTCGATAATACGGTGAAATGCTGTGTATGCAACGAGACCTTTGAGGACGTCATGCATCTCAAGCAACACGAGGTCGGATGCGGCTCTTCGTACTACCAGTGCAAATTTTGCGTCTACAAACCTAAGTATCAggaaaatttgagaaaacaCCTGCTTACGCGCCATGCTGATAAAGTCCGTGGTGAGGACCTTCAGGAGGTTCTTAGACAGTCGGTTTATCGGCCTAAACTTGTTAGAAAACTGAAAGAGAAAGttataaAGGGCATTCGTATGAAAGTTCCCGAAGAACCGAACAAAATCCGAGACGAAATCAgCATAACTGCGAAGACTGTCTACTGTCCGAAATGCGACCTGGATTCGGAGTACAAAAAGGGTATTCGTTATTGTCCCACCTGCAATACGAGCTTCTCCTATCGGTGCAGCGAATGCAGCGGCACTTATCGAGGCCTACCGTCGCTCTACCGACACTTTCACAGACAACACGGAAACATGCATTATGAATGCGAAAACTGTGGAAGATGCTTCTCCTTCTTCGGCGATGTTAATGAACACCGCAAGACCTGTGGCCAAGAGCCCCGTTTCGAATGCGAAATATGTTTCTTCAAGACAAGATACAAATACAATTTGAGAAACCACATGTTCAAAATACACAACGAGAACCGCAAGAATTTTGTGTGCCAGGACTGCGGCATGCAGTATAAGACAGCAAGGACGATGAAAAAGCACATGGACAGATGCGAGAAACGCATTATTAGAATGACCGTAATGGTCATTCCAGATAAAGTATCCAATAGCAAccgagattttttaaatggagATGTATGTACAGATTCGTCAAATGATTCGGATATTGAAGTCATATCCAGCTCaatcaaagaaaagaaaaataccgCAAAAAGTATTACAGCTAGcgcaaaatatttgaaaactatTCTTAAAGGATCCAAAGccaagttaaaaaatgtagcaTCAGTTCTTAAggaaacaaaaacagaatcGAGGAGCATTACATCATTTCTAGTTCCTGAGCAATCTAAACCTCTTCTAATGTTAACTAATCATACTGTTTCAAGAGATAAAATaactgatgatgatgctgGAATTTTAGTCGAAAATCTGCCAGattcagAAAAATCTCCGATTTTCTGTAAAAGTTttgataataatgaaaatctgtTGCATAAAATAGGTAAAAATACCTCAAGGGATTTTTTTCAACCTAAagatcaaataaataatactctTGAATTtgAAGAGGATGTAAATGTTGTTATACCACAGTCAATAGAAGAAACTGAATCAAATATTATGCTTaaacagtttaaaaataaattcaaagtaacCAAACAATCTAACACTCTTATGACTTTAAGAAATGATACTGATTTGAAAGAACAAACGATTGATGATGAAACTGGAATTTCATTTGAAGACTTAGTAGATTTGGCTgatGATGAAAATCTTCCGTGCATTAATGACAAATTGATGGATGATGAAAATGcacttaataaaaaagttaaggATATCTCAAAAAATTGTCTTTCACCTGCTAAAATCTCAAATTGTTACGTTGATCCTGatgATGTTCTACATGGTATATCAGATGATAGCATTTCTAATTCTGATAGTTATCAGAAAGGTTTCGTAGACTCATTGCCTCCTAAAGGTGATCCatctataattaataatgcaCCCTTGAATATAACCAGTGTTGGAAATACTTTATTATCTACAGACGATACTGAATCATTGAATTCACTTGTGAGGCTGAAATGTACAAATTGCTTAACTTTGGTTCAGTGTCCCGAGGTGGAGCCGCAAATGGAGTGCCAGAAATGTTGCTTGAAATATCAATACCAATGCAAAATATGTACATCAGGTTTCGTTTCGTTATATTCGCTTTATACCCACCTCATAAAGTTTCACAGTCGTGGTGAAGCAGTGCATAGTTTAATGATAAAGCCACAATATGTTAAAAAGCCTAGGCAAGTCAAAAGGTTGCAATGTGATTCTAcagaaatttataattgcCAAAAATGTGGTTCGGTTTTCAAATTAGAAACAATTAAGAATAAGCATGAGGCTATTTGCTCCAGAAATCCAAAGCTCAACTGCCCATTTTGCTCTCTTGCTATGAGCTTTAAAAAGAATCTTAAAGAACACATGATCAAATTTCACTCAGAATCATTTGAAATGAATGAAGTGGATGGTATTATTAATCAGATTGTTAAGgacggaaataaaaaaaggagagatGAGAAAGCCACAAGCCTTCTTCAGATGCTGCAAGTTGCTTCTTGCCGCAAGTGCGATCGCCGCACACCGGTCCATGAATTGCTGAACGGACAAATGAAATGCGCGATCTGCAGCGAAAACTTTGTCTTCACCTGCGCCGACCCGGAGTGTTCACGGATTTTCCCGACTGCAAAGGCACTTAGTTTGCACGCGCGCATGTTGCACATCGAGAAGCGCGACCATTACCGCTGCGCTCACTGTCTCTACGCTACGACGAGCAGCAGGGATTTAATAAGGCATCAGAAGGATTGCGGCGATCTGGTAATCCTGCCGCCACGTCTGTTCGTCTGCCCTAACTGCGACAAGAGTTTTAAGAAAGAACGCTATCTGCAAGTTCACCTACAACGCCCTGAAACCTGTGCTCGTAATAAGCAGCGCGAGCTTGTTTGTCCAAAATGCAATAGAACGTTTCGGATGCAGCACTGGCTTCAAAATCATCGCTGCGAGTCTGTAACGACGACGTTGGAGCTTTCGGAGCCGACCCTGCCAATGGAGCTATCTTCCACAGAACTCGTTCCACTCCAAGAGCCAGAATACCCTTGTCCCGATTGCGGCAAAGTCTTCAAACAGATGCGCTGGTTTAATGCCCATAAGGAGAAGTACTGCTATAAGCAGCGAGTACTTTATCGGTGTGCCCACTGTCGCTACCAGGGTttcgaaaagaagaaactcaAGGTGCACATTAGGTGCGCTCACATACATCTGTGCACTGGGAAGAAGTTGCGCTGTGTAAAGTGTGGCACCAAGTGGACAAGCATTTATTCTCTTAATAGACATCTAGATAACTGCAGCGGTGACTATGAGACCGAGAGGttatattataaaacaGTAACTAAATTAGGCAAGTTTGAGACTGCTGCCTAA
- Protein Sequence
- MATINDAFTEGHRYTRSIAAKFYKKMDIDVDNTLPLTNNGPNNNNKEQFCLQEEIIDLHESEGSDIEIVAVSKSVAEGRTKNKLKAFIRSRRKTKIYVNSDGDIPNQLKTFNRSIDRCNFKGLQNTPKRKVPNRNESLSSIILNCPRCNITKTVFSTTLGNITCKECSVNMTYVCNKCNLRYPTMLALYRHKKLQCERTVKAKTLQPKTMFILKCSRCNLSQKIQRIKLSKCLSCCIDMHYECVVCGKNFNTYSNLYTHMKRRCQPKCRTYYCNECSFNCTCESILVRHLNKHHPGLFVLDNTVKCCVCNETFEDVMHLKQHEVGCGSSYYQCKFCVYKPKYQENLRKHLLTRHADKVRGEDLQEVLRQSVYRPKLVRKLKEKVIKGIRMKVPEEPNKIRDEISITAKTVYCPKCDLDSEYKKGIRYCPTCNTSFSYRCSECSGTYRGLPSLYRHFHRQHGNMHYECENCGRCFSFFGDVNEHRKTCGQEPRFECEICFFKTRYKYNLRNHMFKIHNENRKNFVCQDCGMQYKTARTMKKHMDRCEKRIIRMTVMVIPDKVSNSNRDFLNGDVCTDSSNDSDIEVISSSIKEKKNTAKSITASAKYLKTILKGSKAKLKNVASVLKETKTESRSITSFLVPEQSKPLLMLTNHTVSRDKITDDDAGILVENLPDSEKSPIFCKSFDNNENLLHKIGKNTSRDFFQPKDQINNTLEFEEDVNVVIPQSIEETESNIMLKQFKNKFKVTKQSNTLMTLRNDTDLKEQTIDDETGISFEDLVDLADDENLPCINDKLMDDENALNKKVKDISKNCLSPAKISNCYVDPDDVLHGISDDSISNSDSYQKGFVDSLPPKGDPSIINNAPLNITSVGNTLLSTDDTESLNSLVRLKCTNCLTLVQCPEVEPQMECQKCCLKYQYQCKICTSGFVSLYSLYTHLIKFHSRGEAVHSLMIKPQYVKKPRQVKRLQCDSTEIYNCQKCGSVFKLETIKNKHEAICSRNPKLNCPFCSLAMSFKKNLKEHMIKFHSESFEMNEVDGIINQIVKDGNKKRRDEKATSLLQMLQVASCRKCDRRTPVHELLNGQMKCAICSENFVFTCADPECSRIFPTAKALSLHARMLHIEKRDHYRCAHCLYATTSSRDLIRHQKDCGDLVILPPRLFVCPNCDKSFKKERYLQVHLQRPETCARNKQRELVCPKCNRTFRMQHWLQNHRCESVTTTLELSEPTLPMELSSTELVPLQEPEYPCPDCGKVFKQMRWFNAHKEKYCYKQRVLYRCAHCRYQGFEKKKLKVHIRCAHIHLCTGKKLRCVKCGTKWTSIYSLNRHLDNCSGDYETERLYYKTVTKLGKFETAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -