Basic Information

Insect: Trichomalopsis sarcophagae
Gene Symbol: Stag1
Assembly: GCA_002249905.1
Location: NNAY01001812.1:11779-19348[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.019 2.1 8.8 0.5 3 21 1155 1174 1153 1175 0.86

2 14 1.5 1.6e+02 2.8 0.0 2 20 1181 1199 1180 1200 0.93

3 14 0.35 38 4.8 0.2 1 12 1380 1391 1380 1400 0.88

4 14 0.049 5.3 7.5 1.1 1 20 1523 1542 1523 1544 0.95

5 14 4.1e-05 0.0043 17.2 1.1 1 23 1548 1571 1548 1571 0.96

6 14 0.0029 0.31 11.4 3.8 1 23 1584 1606 1584 1606 0.95

7 14 0.83 89 3.7 0.1 1 23 1625 1646 1625 1646 0.83

8 14 0.00022 0.024 14.9 0.8 2 23 1652 1673 1651 1673 0.95

9 14 8.4e-05 0.009 16.2 4.8 1 23 1755 1777 1755 1777 0.99

10 14 1e-05 0.0011 19.1 5.0 1 23 1783 1805 1783 1805 0.98

11 14 0.00022 0.024 14.9 4.6 1 23 1811 1833 1811 1833 0.98

12 14 2.5e-06 0.00027 21.0 0.8 1 23 1839 1861 1839 1861 0.98

13 14 0.00016 0.017 15.3 0.2 1 23 1865 1887 1865 1887 0.99

14 14 0.00033 0.036 14.3 0.1 1 23 1895 1917 1895 1917 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.019	2.1	8.8	0.5	3	21	1155	1174	1153	1175	0.86
2	14	1.5	1.6e+02	2.8	0.0	2	20	1181	1199	1180	1200	0.93
3	14	0.35	38	4.8	0.2	1	12	1380	1391	1380	1400	0.88
4	14	0.049	5.3	7.5	1.1	1	20	1523	1542	1523	1544	0.95
5	14	4.1e-05	0.0043	17.2	1.1	1	23	1548	1571	1548	1571	0.96
6	14	0.0029	0.31	11.4	3.8	1	23	1584	1606	1584	1606	0.95
7	14	0.83	89	3.7	0.1	1	23	1625	1646	1625	1646	0.83
8	14	0.00022	0.024	14.9	0.8	2	23	1652	1673	1651	1673	0.95
9	14	8.4e-05	0.009	16.2	4.8	1	23	1755	1777	1755	1777	0.99
10	14	1e-05	0.0011	19.1	5.0	1	23	1783	1805	1783	1805	0.98
11	14	0.00022	0.024	14.9	4.6	1	23	1811	1833	1811	1833	0.98
12	14	2.5e-06	0.00027	21.0	0.8	1	23	1839	1861	1839	1861	0.98
13	14	0.00016	0.017	15.3	0.2	1	23	1865	1887	1865	1887	0.99
14	14	0.00033	0.036	14.3	0.1	1	23	1895	1917	1895	1917	0.97

Sequence Information

Coding Sequence: ATGCATCGAAGAGGAGGAAAACGTATCCGGATGGACGATCCGGTCCCTCCAGAGTACGAGACGGCTATGATAACGAACGAAAGCTACAGCGAGACTCCAGATTATGGTCAGTCCTCAAATGATTATCAGGATCCAACTCTGGATGCCCAGCTTGCTGCACCCAGCAACATGCGAATTACTAGGAACACCCGTGCCAGGCTACGTGGTGGTCCCATTCAGCAACCGAAATACAAAGAAATCGATGAGGATTATATACCCTCTGCAAGttcagccgccgccgccgcagccgctgctgctgctgctgcagctgctgccaCTCATCATACCACTCATACTACTCATCATGTAACTCATGCACCTCATACTCCCAAGGTAAGAGCTACGGGAAGAGGACGAGCAAAGCGTGCCCATCAATCCCACAATTTGGAGGATGAAACTAGTTTATATTTTGCTGTGCGAAACAACAGATCCTCCTTGACTGGCATTGTAGACGAGTGGATAGAGAAGTACAAGCTTAACAAGGAAAATGCATTGCTTATGCTGATGCAGTTCTTTATCAGTGCCAGCGGTTGTAAGGGTCTCATCACTGCAGAGATGCAATCACTGGAGCATACGCAAATCATCAGAAAGATGACCGAAGAATTTGATGAAGAAAGTGGAGAATATCCCTTGATAATGTCAGGTCAACAGTGGAAAAAGTTTCGCTCCAATTTCTGTGAATTTGTGCAAATTTTAGTACGTCAATGTCAGTATTCTATAATTTATGACCAGTTCTTGATGGACAATATAATTTCTCTACTCACTGGATTGTCTGATTCACAAGTCAGAGCTTTCAGACACACTGCTACTTTGGCAGCTATGAAGTTGATGACTGCATTGGTAGATGTAGCATTGACTGTATCTATTAATCTAGATAATACACAAAGACAGTATGAGGCAGAACGtcaaaaaaatagagaaaaacgTGCTGCTGACAGATTGGAGTCTTTATTGTCAAAAAGAAAGGAACTGGAGGAGAACATGGATGAAATCAAGAACATGCTGACTTACATGTTCAAATCTGTTTTTGTGCATAGGTACAGAGATACCCTCCCGGAAATACGAGCAATTTGTATGGCTGAAATTGGTATTTGGATGAAGAAATTCCACCAAAACTTTCTCGATGACTCGTATCTCAAATATATAGGATGGACTTTACATGATAAAGTGGGAGAAGTCAGACTCAAATGCTTGCAAGCATTACAACCACTTTATGCATCTGAAGAGCTCAAAACCAAATTAGAACTTTTTACCAGCAAGTTTAAGGACAGAATTGTAGCCATGACGTTAGATAAAGAGTACGACGTCGCTGTGCAGGCGGTGAAATTAGTCATTTCGATATTCAAACATCATCGCGAAATTCTCACGGATAAAGATTGCGAGCACGTTTATGAATTAGTCTACTCTTCTCACAGAGCTGTTGCTCAAGCAGCCGGAGAATTCGTAAACGAAAGATTCTTCACCTCCAATGAGGAGCACGACGTAAAAACAAAACGTGGTAAGAAACGTTTGCCAAACACTCCTTTCATCAGAGATTTAGTTCTGTTCTTCATTGAATCTGAACTTCACGAGCATGGAGCATATCTGGTTGATTCATTGATAGAAACTAATCAGATGATGAAAGACTGGGAGTGCATGACTGATCTTTTAATAGAAGAACCTGGTGATGAAGAAGATGTGCTGGACAATCAACAAGAAACATCCCTCATTGAAATCATGGTCTGTTGTATCAAACAGTCTGCCACTGGTGAGGCTCCTGTGGGTAGAGGACCTACGAGAAAAATCTTGTCAGCTAAAGAGTCTAAGCAAGTCCAGGAAGATAAGCAACGTTTGACCGAACATTTTATTCAAGTTTTACCTATTTTGTTGGACAAGTACAGAGCTGATCCTGAAAAATTAGCAAATTTATTGTCTATACCTCAGTACTTTGACTTGGATATCTACACCAAATCTAGACAAGAACAAAATTTGGATCTTCTGCTGAGAAAAATTCACGATATCGTAGACAGATCACCGAATTCGGAAGTTTTGAATACAGCCGCCAAAACTCTCGAGTACATGTGCGTTCCCGGATCAGCTATTTTCCGCAAGTGCGATGTAGCTAGGTCTACGCTGATCGATGCGATCGTCATCAAGTACAACGAAGCTATTACCACCTTCAAATACCAGATGGATGGAAGCGAGCAACCGACCGAGGATGAAATCTTTGCCGTGGTCGAGTCCTTGAAGAAGGTCGCTATCTTCTACAGCTGTCACAACATGAATAGCTGCGACATTTGGGAGCCCATGTTCAAAGACATCAAAGATTACCCTTACAATCTACCAGTGGAGGCAATCAAATACTGCATCAACGCTTGCTTCTACTCGATTTTATGGTCGCAGAGCGACCTGATCGAGAATCTTGAGGGCGACAACCGAGCCGACGAGGAAGCTCAAAGGCTGAGAGGCCGACTGCACGACTTTATGCGATGCATGTACGAGTTTATCAGTACCGAGAACGAAGAGGAGATACCAATCCTGCTGAAGGAGGAGGCTTACAACACGATCTGCGACCTGCTCGTTATATTCTGCAACCAGCTGACGACCCAGAAGAACCAACTGCTGCATCAGTTGGTCTACGAAGCCGACGTCCTCATGCAGGACTCGCTTAACAGATTCGTCCAGCTATACGTCTTCTCGGATAACGAGGAGGACGAACACGACGAACATTCCAAGATCGAAGAGCTGCACAAGAAGCGCAACTTCCTCGCTGGCTTTTGCAAGCTCATCGTGTACAACATGATCCCGACCAAGGCGGCGGCTGACATCTTCAAACATCACGTCAAGTTCTACAACGACTATGGCGATATCATCAAGACGACGATAGGCAAGGCTCGAGACATCAACAAGACCAACTGCGCGCTCACGATGCAGCAGAGTCTCAACATCCTCTTCAACGAGATTCTCGAAAAGGAAGACAAGGTCAGTAGGACCAGCGAGGAGTTCACGGCAATCAAGGAACTGGCCAAGCGCTTCGCCTTATCCTTTGGTCTGGACGCTGTGAAAAATCGCGAGGCTATCACAGCCCTGCATCGTCAGGGAATACTCTTCGCTGTATCGATGCAGGATAGCGACGTCGATCCAACCGGACCCCCGCCCAATCTCGCCTATCTCGAAATTCTCAGCGAATTCACCAATAAGCTGCTCAAGCAGGATAAGAAGCTGGTACTCAATTTTCTGGACAAGCATTTACAGGCAGGTATGCCGTCGTCGAAAGGAGAAGACTGGCAACCGTTGCTGCTCTACAGAAACAGCTTGCTACACGGAGACACCGATACTATCCCGGTCACCAGTAAACGTGCTTATACCAGACGCAGAAAAGATCTCATTGCTGAAGAGGACGACGGCGATGAAGGAGACGACGCTTCGGACCACGACTTGACCTGTCCCATGTGCTGCGGAGAGACTTTCAACAACTCCGAGTCTCTCAAGTATCATTTGCTGAGCATTACAGACAACCTGTACTGTCCTGGATGTTCGATCAGGACTTACTCTATGGCTGCTTTGATACAGCATCTAGATTGTTGTGGAAAGCAAGAGGAGCCAGAGGAGCAGCAGAAACTCCGGGAGGTTATGCCCGATCAAACTGAAAACAATGAGAATGCTGCAGAAGGATCTAACATTTTGATACATGATATGCCTGACAACGATGAGGATACAATTAATGACAGTTTTTTAGCTACAGTTAATGAAGAAGGAATAATGATTGTGGGTGAGGGAAGGACTATACAAGTTGATGAAAATGGTGATATTCAAGTCCTAGAAAAAGGGACTCTAATAAATAGTCAAAAATCGAATGATATAGATAATAGTATAAAACAAGATAACTATGAAGATTCTGAGACATCCAATCCCAGACCTGAAGAGACAAATTTGGAAGGAAATAGTTGTACCTCAAATATGCCTGACACTTCCGAATTATTGAATGATAATAGCAATGAATTTATGGAAATGGTTGATGGTGATATGCCGTTTGAAAACCATGAAATGCTTGGAATCAAAAAGGAACATGATCAATCAGATGAGAAGGAGCAAGAAGATGCAGAAAGTGAAGTAATGTACAGTTGTAGTACATGTGGTATGAGTTTTGCTTCTGTATTGGAACACATCAAAGAATATCATGACGGACAAGAAGTTGTATTAGAAATGGCAGAACAACAAATTGATGAAATagctgcaacaacagcagcacaGAACATTGATGAATCCCCTGCTGATGCTAATGCATCAGAAGAAACAACAAATAATGCTACAACAAAAGCTAATTCATCAAAACAGAGACAAGCTATGAATACATTAAAGACCGAGGAATGTATTGACAGTGATGGTAGATTATATACTAGAAAGGTTGTGCAAATTGAAAGATTTTGGGACAGGACTCCAGTAACTCTCTCAACAACTAAAGCTCCTAtgattgaaaagtttttctctAATGTTGAAGGAGTCAAGgTTCGGGACAAAAGCGTAACGGTCGCTCCAACTCGAATGTACAGATGTAATCAGTGCTTGGAGCAGTTCGCCAAATTGAGCGATTTTCGCATTCATGTGTGCCTTCAGGGAGCCCATCGTTGTGATAAGTGCGAACAGACGTTCGCCACACCAAAAGCACTGCAGATACATATTAAGCAGTCACATCTAATAGAGTCAAGCGAGATACCATCACAAAATCTGTTTTTGTGCACAGTCTGCGGAACCAAGTTTCAGACGCACAAGAGTCTGCGACTGCACTCGCGAATGCACGCACCCGTGAGATCGAGACATGTTGACGCACCTGTGGGCACTGGGGAGGAAACGTTCGATTGCAATGAATGCGGTGCCACATTGTCAGAGTCGTACAGGTTGGCTCACATGGCTTTGCATGCTGGTGATCCAATAACTTGCCATGTCTGCAACCGCAAGTTTGATTCAAAAGAGAGTTTAAACATGCATGCTGCAGTGCACTTAGAAATCCCTATGAATTCGAACAGTGGAGCGGCAAACAGTGCTGCTATGGCATTGGCAGCTGCTAACGAGATGATCATCTCCACGACGGAAGATCCGACCGATCCCATATTTGTCAGCACCGGTATTACTCCTGACAAGACTACACAGGTTAATACCATGGCGTCAACGTCGTCAACGGTGACGACTACAacagcaacgacgacgacaaccGATTCAGCCGAACTGCAAAATCAAAAGCCTTATCAGTGCCAGCATTGTGGACGCAGGTTCACGAGACCTCACGAGAAAGTCAAGCATGAGAGAATACATACGGGGGAAAAGCCACACTCTTGTGAGGTTTGTGGCAAAAAGTTCCGAGTTTCTTATTGTTTAACTTTACACATGAGAACGCACACAAATGTTCGTCCCTACGAGTGTCAACACTGCGGCAAGCGATTCAAAGCTTCTTCTGTCTACAACCATCACTTGTTGACCCACGGCGAGGAGCGCGCCTATACCTGTCCTTACTGTccaaaaacatttaaaacgCGGGTACAGCTGGCTGGGCATAAGAATAGTCATACCAAGCCGTTCCGATGCACCGAGTGCTCAAGGCCATTTGCTTCGCTCTATGCTGCACGAGCTCATATCCAAACCCATAAACAAGACAACAACCTCAAGTTTAGTTGCAACATATGCGGAGCTTCCTACGGACGTGCCTTTGCTTTAAAAGACCATGTAAAACAGCACGAAAGGGATAACACACTCGTGCCACCTGAAGCTACTCGAGAAGAAGAGGTACAGGAGgttgaaagttttttgttGCCAACAGTTGAAGAGGTGGAAGATGACGAGCTTATAGTACCATCGCCTCCCGCTTGTAACGACCCAATGGACGTTGAGTTAGTAGAAGAGGTGTGA
Protein Sequence: MHRRGGKRIRMDDPVPPEYETAMITNESYSETPDYGQSSNDYQDPTLDAQLAAPSNMRITRNTRARLRGGPIQQPKYKEIDEDYIPSASSAAAAAAAAAAAAAAATHHTTHTTHHVTHAPHTPKVRATGRGRAKRAHQSHNLEDETSLYFAVRNNRSSLTGIVDEWIEKYKLNKENALLMLMQFFISASGCKGLITAEMQSLEHTQIIRKMTEEFDEESGEYPLIMSGQQWKKFRSNFCEFVQILVRQCQYSIIYDQFLMDNIISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALTVSINLDNTQRQYEAERQKNREKRAADRLESLLSKRKELEENMDEIKNMLTYMFKSVFVHRYRDTLPEIRAICMAEIGIWMKKFHQNFLDDSYLKYIGWTLHDKVGEVRLKCLQALQPLYASEELKTKLELFTSKFKDRIVAMTLDKEYDVAVQAVKLVISIFKHHREILTDKDCEHVYELVYSSHRAVAQAAGEFVNERFFTSNEEHDVKTKRGKKRLPNTPFIRDLVLFFIESELHEHGAYLVDSLIETNQMMKDWECMTDLLIEEPGDEEDVLDNQQETSLIEIMVCCIKQSATGEAPVGRGPTRKILSAKESKQVQEDKQRLTEHFIQVLPILLDKYRADPEKLANLLSIPQYFDLDIYTKSRQEQNLDLLLRKIHDIVDRSPNSEVLNTAAKTLEYMCVPGSAIFRKCDVARSTLIDAIVIKYNEAITTFKYQMDGSEQPTEDEIFAVVESLKKVAIFYSCHNMNSCDIWEPMFKDIKDYPYNLPVEAIKYCINACFYSILWSQSDLIENLEGDNRADEEAQRLRGRLHDFMRCMYEFISTENEEEIPILLKEEAYNTICDLLVIFCNQLTTQKNQLLHQLVYEADVLMQDSLNRFVQLYVFSDNEEDEHDEHSKIEELHKKRNFLAGFCKLIVYNMIPTKAAADIFKHHVKFYNDYGDIIKTTIGKARDINKTNCALTMQQSLNILFNEILEKEDKVSRTSEEFTAIKELAKRFALSFGLDAVKNREAITALHRQGILFAVSMQDSDVDPTGPPPNLAYLEILSEFTNKLLKQDKKLVLNFLDKHLQAGMPSSKGEDWQPLLLYRNSLLHGDTDTIPVTSKRAYTRRRKDLIAEEDDGDEGDDASDHDLTCPMCCGETFNNSESLKYHLLSITDNLYCPGCSIRTYSMAALIQHLDCCGKQEEPEEQQKLREVMPDQTENNENAAEGSNILIHDMPDNDEDTINDSFLATVNEEGIMIVGEGRTIQVDENGDIQVLEKGTLINSQKSNDIDNSIKQDNYEDSETSNPRPEETNLEGNSCTSNMPDTSELLNDNSNEFMEMVDGDMPFENHEMLGIKKEHDQSDEKEQEDAESEVMYSCSTCGMSFASVLEHIKEYHDGQEVVLEMAEQQIDEIAATTAAQNIDESPADANASEETTNNATTKANSSKQRQAMNTLKTEECIDSDGRLYTRKVVQIERFWDRTPVTLSTTKAPMIEKFFSNVEGVKVRDKSVTVAPTRMYRCNQCLEQFAKLSDFRIHVCLQGAHRCDKCEQTFATPKALQIHIKQSHLIESSEIPSQNLFLCTVCGTKFQTHKSLRLHSRMHAPVRSRHVDAPVGTGEETFDCNECGATLSESYRLAHMALHAGDPITCHVCNRKFDSKESLNMHAAVHLEIPMNSNSGAANSAAMALAAANEMIISTTEDPTDPIFVSTGITPDKTTQVNTMASTSSTVTTTTATTTTTDSAELQNQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKKFRVSYCLTLHMRTHTNVRPYECQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKQDNNLKFSCNICGASYGRAFALKDHVKQHERDNTLVPPEATREEEVQEVESFLLPTVEEVEDDELIVPSPPACNDPMDVELVEEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -