Tsar010131.1
Basic Information
- Insect
- Trichomalopsis sarcophagae
- Gene Symbol
- -
- Assembly
- GCA_002249905.1
- Location
- NNAY01003108.1:12943-17620[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0023 0.24 11.7 0.9 1 23 295 317 295 317 0.94 2 13 0.37 40 4.7 0.3 1 22 322 343 322 346 0.89 3 13 2.6e-05 0.0027 17.8 1.6 2 23 441 463 440 463 0.96 4 13 6.5e-06 0.0007 19.7 0.1 1 23 469 492 469 492 0.96 5 13 0.00075 0.081 13.2 0.4 1 23 501 524 501 524 0.96 6 13 1.5e-07 1.6e-05 24.9 3.6 1 23 530 552 530 552 0.98 7 13 3.5e-06 0.00038 20.5 1.0 1 23 558 580 558 580 0.98 8 13 0.002 0.22 11.9 7.9 1 23 586 608 586 608 0.96 9 13 7.4e-09 7.9e-07 29.0 0.7 1 23 614 636 614 636 0.99 10 13 2.6e-05 0.0027 17.8 7.6 1 23 642 664 642 664 0.98 11 13 0.27 29 5.2 5.5 2 23 671 692 670 692 0.95 12 13 1.3e-05 0.0014 18.7 1.1 1 23 698 720 698 720 0.98 13 13 8.7e-08 9.3e-06 25.6 1.5 1 23 726 748 726 748 0.98
Sequence Information
- Coding Sequence
- ATGGCGGAAATTCGTTTATACGATTCGACAATTTGTCGATTATGTGCGGAAAATAATGACAACGGCGAAATGTTATTCACTCATGAGTCTCAAGATACGGAGCTTAGTGCGATGGTCAACCGTTATTTACCGCTCAAGGTTTACGATGATGGCAAATTACCACGAACCATTTGTCCTGGATGTAATATCCAGTTGGAAGCCACTGTCCAGTTTTTTGAACTACTTATTAATGGTCAGCGTAAAATTCGAGAAATGTGGAAACAACAAGTTGAATTGGAAAGTAAAGCTGAACAAGAGCATTACAAAGTCAAGAGTATTAATTTAACTTTggataattcaaaattgataaattcaGAAAATGATAATTCAGAAGGTACCGAGCAACAAATTGTTATTAATGtaaTGCCAGATGGTTCTGTATTTGCATCAGAGCATGACTTGAGTTTACAAATGGAAGGGTTGGATAAacctaaaaaaagaagaggtcGCCCACCAAAAGGATGtatagaagaagaagtaaaagaggaaaaagaagagtacacagaagaagaagacgataAACATGATGAACTGGATGGAGATGGAAGGCAAAGGAGAAGACGCAAAGTTCCTAAAAGATACATAGAAACTGTGCGTGGTAAAGAgttagaaaaaatgtttaaagaaGAAGGTGTCTATGATGAAGACGACGTCCAAGTAAAGTATGAAGCTGATGAAAATCTTAATACTTCAACTGCAGATAGTAGCAATAGTGACACagAAATTATTGGACATTTAGAAACAATAGAAGGAGAAAATTTAGGGGAATTTGTTGTAGTCAATAGAAATAAAGTTCgttctaaatcaaaatctcaaagatcaaagtttaaaaaaaaacaaaaatttacatgtTCCTATTGTGGCAAAGGTTTTCTACAACgaagtaaatatattattcatgAAAGTTTACATAAAACTCTTAACTATGAATGTGTTGAATGTCAAGACCAATTCATTAATAAAGAAGATCTAATGTTTCATCAGAAATCATTAGCGCATTCTGGAATTAATGTAATCGAAACTAATAATGATCTAATAGATGACAAAAAAGTGAATTCACACAATTCAGTTGCTGTTAAAACagtagatataaaattaactaaTAGTGCTGAACTTGATAAACGTTCGAGTAGCCCATTAACTAGTATTTCCAATGATACTGGGGGCTTGAAAAGTTTGGAGCAAGATGAATTGCAAGAGATTCTTGAAGAAAAGCAAGACAATTCAAGTCAAGATGAACCAGCTAATGATTCAGAATTTCAAGATTTGAATGGTAGCTTAAAATGCTTGAAatgtaataaacattttcaatcaAAAGATAATTTAGAAGCTCATGTGAAAGTAGTTCATGAAGGAGAAAAACCTTTTATATGCGAAATATGCAGCAAGGCATTTGCATATCAATCGAGCTTAAAAGGACACATGGAGATAGTTCATAcagATACCAATACAGATAAAGGATTTCCTTGTGACATATGTGGAAAAGTTTTGAATCACTCAAGTTCAATAGTGTATCATAAATTAACAGAACATAATAACGGACGTCGATTCGTGTGCAATAAATGTGGAAAAAGTTTCAAACATAAACAGCTTTTACAGCGACATCAACTTGTTCACTCAGAAGATAGACCGTATCCATGCAAGTCTTGTAATGCATCattcaaaacaaaagcaaaTTTGCTAAATCATCAGTCAACTCATactggagagaaaaaacatttttgcgAACTCTGTGATCACAAATTTGCTCATAAAACAAGTCTTACTTTACATTATAGgaCTCATACAGGTCAAAAACCTTATAAATGTGAAGTTTGTTCAAAAAGTTTTTCACAAAATGGTAATTTGCAAGAACACATGAGAATTCATACAGGAGAGAAACCCTACTGTTGTGATCATTGTGGTAGGAAATTTACAACGTCTTCCCAGTTCAAATTGCATGTTAAAAGACATACAGGAGAACGGCCTTGGAAATGTGAATTTTgtggaaaaacatttttgcacAAAGATACTTGGAAATGTCATGTACGTAGACATACAGGAGAACGTCCCTTCACATGTGCATATTGCAATCGCGGTTTTACGGAACAATGGGCtttgaaaaaacatttaagATTTCATACAGGGGAAAAACCATACAGCTGTGAAATTTGCGGAAAGGCTTTTGCAGATTGTTCCAATTTAACAAAACATAAAAAGGTTCATAAAAATCAACCACCACCAGATTCGTCAGAATTATTGGATGGAACAGCAAACATGGGACAAGTTTGGCAAATTCTACCAGATTCTCAAGAACAAAATGCAAGCAATTTAAATAATCTAACTCAAGTTATGACAACTGATCAAGTTTCTCCAGACGATGGCATGTCCCAGATAATTTATGTTGCTTATCAAGATCCAGATCAATCAAATGAGTCTGAAACAGTACAATTCAataaagaaAACGTGATAGCTGATCACGAAAGAAACTTGGATCAAGTTTGtaatgatgaaaattcaataaatgtGAATGAGCTTGCAGAATCTGATTTACAATTGCAAATAACTGATGAAGATGGCAATGCCATTCCACTATCTATACAAGAAGCTAGACAGTTGTTGGCTGAAGGACATTTTATTAGCCAGTTAGATGGTGGGCAAACAATTAGAGTACAAAGTATGGATACACCTTTGGATAGTATTTCAAACATTGAAGAATCCGAAAACTCtgttaaagaaaataatttgcaaaaaatcaatatagcAGCGTCATCTATTCAAACTGATGCTGAAGCAATAGCAAAAGTCTTGGAGGATGAAGATACTGATGCAACAGCTGTAGCATCTGTTAACCAAATAAATGCAGAGAACCAATTAGAATTGGCAGATGATCAACAAGCTATAGAGTTTATTACTCAAGATGGTCAAAAAGTTCGATTGGTGACTTCTCTGAATGTAGACCCACTACAGTTAGCCTCTGAGTACCTGACTATTGTTTAA
- Protein Sequence
- MAEIRLYDSTICRLCAENNDNGEMLFTHESQDTELSAMVNRYLPLKVYDDGKLPRTICPGCNIQLEATVQFFELLINGQRKIREMWKQQVELESKAEQEHYKVKSINLTLDNSKLINSENDNSEGTEQQIVINVMPDGSVFASEHDLSLQMEGLDKPKKRRGRPPKGCIEEEVKEEKEEYTEEEDDKHDELDGDGRQRRRRKVPKRYIETVRGKELEKMFKEEGVYDEDDVQVKYEADENLNTSTADSSNSDTEIIGHLETIEGENLGEFVVVNRNKVRSKSKSQRSKFKKKQKFTCSYCGKGFLQRSKYIIHESLHKTLNYECVECQDQFINKEDLMFHQKSLAHSGINVIETNNDLIDDKKVNSHNSVAVKTVDIKLTNSAELDKRSSSPLTSISNDTGGLKSLEQDELQEILEEKQDNSSQDEPANDSEFQDLNGSLKCLKCNKHFQSKDNLEAHVKVVHEGEKPFICEICSKAFAYQSSLKGHMEIVHTDTNTDKGFPCDICGKVLNHSSSIVYHKLTEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHSEDRPYPCKSCNASFKTKANLLNHQSTHTGEKKHFCELCDHKFAHKTSLTLHYRTHTGQKPYKCEVCSKSFSQNGNLQEHMRIHTGEKPYCCDHCGRKFTTSSQFKLHVKRHTGERPWKCEFCGKTFLHKDTWKCHVRRHTGERPFTCAYCNRGFTEQWALKKHLRFHTGEKPYSCEICGKAFADCSNLTKHKKVHKNQPPPDSSELLDGTANMGQVWQILPDSQEQNASNLNNLTQVMTTDQVSPDDGMSQIIYVAYQDPDQSNESETVQFNKENVIADHERNLDQVCNDENSINVNELAESDLQLQITDEDGNAIPLSIQEARQLLAEGHFISQLDGGQTIRVQSMDTPLDSISNIEESENSVKENNLQKINIAASSIQTDAEAIAKVLEDEDTDATAVASVNQINAENQLELADDQQAIEFITQDGQKVRLVTSLNVDPLQLASEYLTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00287482;
- 90% Identity
- iTF_01037255; iTF_01036461; iTF_01035662;
- 80% Identity
- -