Tsar005280.1
Basic Information
- Insect
- Trichomalopsis sarcophagae
- Gene Symbol
- -
- Assembly
- GCA_002249905.1
- Location
- NNAY01006302.1:2849-5710[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.2e-05 0.0023 18.1 1.3 1 23 10 32 10 32 0.98 2 15 3.3e-07 3.6e-05 23.8 0.7 1 23 38 60 38 60 0.99 3 15 0.51 55 4.3 4.2 1 23 66 88 66 88 0.90 4 15 5.2e-06 0.00056 20.0 4.4 1 23 94 117 94 117 0.95 5 15 2.9e-07 3.1e-05 24.0 1.0 1 23 127 149 127 149 0.99 6 15 0.036 3.8 7.9 4.8 1 23 155 177 155 177 0.98 7 15 6.7e-06 0.00072 19.7 4.2 1 23 183 205 183 205 0.97 8 15 1.5e-06 0.00016 21.7 0.2 1 19 211 229 211 232 0.94 9 15 0.51 55 4.3 4.2 1 23 238 260 238 260 0.90 10 15 4.5e-06 0.00048 20.2 5.1 1 23 266 288 266 288 0.97 11 15 6.5e-08 6.9e-06 26.0 0.2 1 23 294 316 294 316 0.97 12 15 9.6e-06 0.001 19.2 2.3 1 20 321 340 321 343 0.91 13 15 4.5e-06 0.00048 20.2 5.1 1 23 369 391 369 391 0.97 14 15 6.5e-08 6.9e-06 26.0 0.2 1 23 397 419 397 419 0.97 15 15 9.6e-06 0.001 19.2 2.3 1 20 424 443 424 446 0.91
Sequence Information
- Coding Sequence
- atggaTAATACTGAGAAGATTCCCCTGTTCGAGTGtggtttttgcaaaaaatcatttaaaaataaaagtattttgacAGTGCATGAACGAGTacacaaacaaaataaaccaTATACATGTCGTACatgtaacaaaaattttgttcaacaAGGAAATTTATCTATTCATATTAGAATCcatgaaaatgtaaaaccATATGAATGTTCAACGTGctgtaaaacttttaaaaccAAAAATCAGAAAGATCTTCATGAAAATGCTCAtaaaaagataagaaaatataattgcaaTAGTTGCAGTAAGAGATTTTCTCAGAATACACATTTGCAAAAGCATATGTTGNCAGTGCATGAACGAGTacacaaacaaaataaaccaTATACATGTCGTACatgtaacaaaaattttgctCAACAAGGAAATTTATCTACTCATATTAGAATCcatgaaaatgtaaaaccATATGAATGTTCAACGTGctgtaaaacttttaaaaccAAAAATCAGAAAGATGTTCATCaaaatgttcataaaaagataagaaaatataattgcaaTAGTTGCAGTAAGAGATTTTCTCAGAATATACATTTGCAAAAGCATATGTtgaatcataataatatatgtaaatatgcATGTGAAATTTGTGACAAACCTTTCGCAAGAAAGGATTCCTTAAAAAGACATGAAATCcatgaaaatgtaaaaccATATGAATGTTCAACGTGctgtaaaacttttaaaaccAAAAATCAGAAAGATCTTCATGAAAATGCTCAtaaaaagataagaaaatataattgcaaTAGTTGCAGTAAGAGATTTTCTCAGAATACACATTTGCAAAAGCATATGTtgaatcataataatatatgtaaatatgcATGTGAAATTTGTGACAAACCTTTCGCAAGAAAGGATTCCTTAAAAAGACATGAGTTGactcattttaaaaatgaatttacatGCAATTATTGTAAGAAGACATTTgcatataaaacaaatttacttAAGCATAATGTAGCTCATATGGACACGAGCAGTAAACTTTTAAAACCCCCAGTTAAAGATCTTCATGAAAATGCTCAtaaaaagataagaaaatataattgcaaTAGTTGCAGTAAGAGATTTTCTCAGAATACACATTTGCAAAAGCATATGTtgaatcataataatatatgtaaatatgcATGTGAAATTTGTGACAAACCTTTCGCAAGAAAGGATTCCTTAAAAAGACATGAGTTGactcattttaaaaatgaatttacatGCAATTATTGTAAGAAGACATTTgcatataaaacaaatttacttAAGCATAATGTAGCTCATATGGACACGAGCAGTAAACTTTTAAAACCCCCAGTTGTATGGATACCtagtttttctgaaaaataa
- Protein Sequence
- MDNTEKIPLFECGFCKKSFKNKSILTVHERVHKQNKPYTCRTCNKNFVQQGNLSIHIRIHENVKPYECSTCCKTFKTKNQKDLHENAHKKIRKYNCNSCSKRFSQNTHLQKHMLXVHERVHKQNKPYTCRTCNKNFAQQGNLSTHIRIHENVKPYECSTCCKTFKTKNQKDVHQNVHKKIRKYNCNSCSKRFSQNIHLQKHMLNHNNICKYACEICDKPFARKDSLKRHEIHENVKPYECSTCCKTFKTKNQKDLHENAHKKIRKYNCNSCSKRFSQNTHLQKHMLNHNNICKYACEICDKPFARKDSLKRHELTHFKNEFTCNYCKKTFAYKTNLLKHNVAHMDTSSKLLKPPVKDLHENAHKKIRKYNCNSCSKRFSQNTHLQKHMLNHNNICKYACEICDKPFARKDSLKRHELTHFKNEFTCNYCKKTFAYKTNLLKHNVAHMDTSSKLLKPPVVWIPSFSEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -