Basic Information

Gene Symbol
Trerf1
Assembly
GCA_002249905.1
Location
NNAY01001147.1:26137-37724[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.7e-10 6.4e-07 29.2 0.1 2 46 834 878 833 878 0.96

Sequence Information

Coding Sequence
ATGAGGCTTCACGGCGGTTACTTCAAaaagGACGCCGAGAACAAGAAGAGCGAGAAGAAGGAGGTCGTGGGTCCACCTCTTCAAACAGCCTCCGTCAGCGTTCGGGCTCTCATAGAAGAGAAGATCATCCAGAAGAGAACGACAGCAACGGATGcaaacgcagcagcagcggcagcggcagcccagcaacagcagcgcgcCAACGCGGTGAGCTTTGCCAGCCAGCAGACGACGAGTAGCTCGTCGACGGCGTCAACGGAGGTCCAAGCACAGCAGCAAccgcaacagcaacagcagcagcaaccacagcaacagcagcagcacgtcATGGGGAAGATGAATTTCGCGGTACCGGCACCGCCACCACTGGCCGGTGTCGAGAAGACGCGGAGACTCTCCGATGGCGAGCATTTCAGACAGCCCAACGTGACCATCGCTGGACATGCTAGTTCCGTGCAGAAACAGCTCCAGGAGGCGCAGACGCAGGCGCAGGCTCAGGCGCTCGCCGATATGATTCTCAAGGGCACGACGAAGATGGCCGTGAAGCGCGCGACCTCGGATCCAGGGCAGAGGGTCCAGCTGGCTTACCAAAGCACCACCAATgcccagcagcaacagcaaaacgcgcagcaacaacagcagccaACCATTACGGAGAGCTTCACGATGACCGGATATCCCGAGGACGGCGGCTACTTCAGTCCCAGTCTGCAGGACGAAGTGTTCCAACAGTTCCAAACGTCGAGTCTGCTGCAAGACCAGTCGGGCAACGAGACTCTCCCGGACATCAACCTGGAGGAGCGTTTCTCATCCCAGCACACAGTCAACCCGGACCTCCAGGCGCTCGTCAATTCACCTCTGCCAGACTCCCTCGCCGAGTTCAGCACGTACGGAGCCAACTACAACGACGGTTCCCACACTCTGCCCAGCCAGTCGCCGCTACCCTCGCCGTTGACGCGACACGACAGTCCCAGCTTCACTTACCCAACGCCACCGGCCAGCCAAGAAGGTTTACTGAGCGGTAGCCTACCTCTGCTCAGTCCTCAGGAGGACAGCGACGCGGTCCACTCGGTCTCGTCGCCGCTATCCGCGGCTTTCTACAGCACGAGCATGTCCTCGGTAGCGGCTATCGAGGAGGCGCTCAGCGAAGTCCTGCCCGACGAGGCCGACAACGACGGCGCTGATATCTATGGCTCCGGATGTCCCAACCCACACTCACCCTTACCCAGTCCTTTATCCGCCACTCCGGCACCGTCGCCACTCTCCTCGCTACCACCGTCGTCTGTCTCGTCACCGGGACCGGGGAGCTTCACCACCTCGAGTTTTCCCATGTCGCCCCATCACACACTCCAGAGCCAGATGATGCCCAACTCTGAAGATCCTCTGTTGTCCTCCAGTCCCAAGGACTTTGGCGCTGGCAGACGGAAGTTCGAGTTCCAGTCGTACAAGCTCATCACCAATCAGAACCTCGTGGACTTTGGACTGGGCAACGGGAGCGTCGCTGGCATCGTTGTCGATAACAACGGGGAGTTCAAGCTCATACAAACCGCGGGCCTGCAGAAGGCGAACGTCTACGTGCAGGCGGGTGCTCTCAGTCCGGCTTTGGCGTTCAGAAAGGAGATCTGTCAGGTTGGTCCGAAGCTGGAGCAGGGGAACATTAACGTCAACGTCGTTAACGGCCAGAGTATGAATCTGCAGAACCACATTTACCAGCAGACTCAAGTTCACCAGCAGGCCATAAACCCAGCGAAATTCCTTATCCAGATAAATCAAGCTAACAAGCCCAACCTAAAGCACAAGGCTATGTCGGTACCAGCAGAACAAGTCAAGGAAGAAGAGTCTCTCGACGAGGATGTCTTCCTGAGCCCCAGCAGTGTTCCCATGACAGCCTCGGGTAGTCCGGCTCGTCACTACAAGAAGCGACCGCGACTCGATGGTCCTATGCACTGCAACAGTGGTACCAGTAGCTGCTCAGCGATCAACGGCTCGCACTCGTATCCGTCGCGATTACGACGCGCCTGTGATCGTCACTGGGACAGCAGTTACACACCTCCACCGATCTTGGATCCCTCGAGACCAGGTTCTGGGCTCTATGCCCGACTGCATCAGAACGAGCGTGACTGTGTGGACTTCAGCTCGGATGATTCACAGGGCAACGACGGACCGCCGCCGAGGATCAACATCGGTACCAGGTACCAAGCGACGATACCCCAGATGGTCGAAAACGAGTGCGAAAGGCTCGCCGCCACGGAACCCGAGATGGACCATCTGCTGTGGGACCCTGGCATAGAGAGTGCCCTCACCGAGACCGAACTGGAAATGTATCTGCAATTCGCCTGCTGCGCTGCTGTTCCCGGCGGTGGTAGAAATAAAGAGTATGCCCTTCATCTTTTACACATGTGCAGGGGTAATATTCGAGAGGCAATGCTGAAGCTGATGAGACCCACGCCGAGTCTAACATCGGAACACCCGCTTCTCAGCTACGAGTGCCAGGAATCCGATCGTTGGACGTCCCACGAAATGGACTTATTCTATCAGAGCCTGCTAAAGTACAACAAGGATTTCGGAGCGATAGCTCGGGAAATCGGAAGCAAAAGCACCAAGCAGTGCGTACAGTTTTATTACCTGTGGAAACGACTCTGCCCGGACGAGTATAAGAGGCTGCGATTGCGCTACGGCAAGCCGAAGATTCAGTCCGATTTTGGCAGAGACGGCAAGGATACTAAGGACCTGTGCGACGCTATCGCTGCGGTCGCGGAGCTGGACTTCAGTGAAGGAAAGTCCATACTCCATCGAACTCTGATGCAGACGACGAATGAACGAGAAAACTCGGCTACTTTGACAACTAGCGAAGGAGAATTGCGACTCTTTGCGTATGATTGTCAAGATAGCTTTAGCGGGAGCGTAACAGTAACGATGGCCGGGAGCGCCCAAGTCGCTCGTGCCCCAAGCTGCACCGGCAAAGCCGGTGGCGCTACCGGCTACGCCACAGTTGACCACACCAACTCACAAACTCACACTAGTACCGAGCAACAACTACCCGCGCCCACCCCACTTCACTACCCCTGCAAGATTTGCGGGAAGTAA
Protein Sequence
MRLHGGYFKKDAENKKSEKKEVVGPPLQTASVSVRALIEEKIIQKRTTATDANAAAAAAAAQQQQRANAVSFASQQTTSSSSTASTEVQAQQQPQQQQQQQPQQQQQHVMGKMNFAVPAPPPLAGVEKTRRLSDGEHFRQPNVTIAGHASSVQKQLQEAQTQAQAQALADMILKGTTKMAVKRATSDPGQRVQLAYQSTTNAQQQQQNAQQQQQPTITESFTMTGYPEDGGYFSPSLQDEVFQQFQTSSLLQDQSGNETLPDINLEERFSSQHTVNPDLQALVNSPLPDSLAEFSTYGANYNDGSHTLPSQSPLPSPLTRHDSPSFTYPTPPASQEGLLSGSLPLLSPQEDSDAVHSVSSPLSAAFYSTSMSSVAAIEEALSEVLPDEADNDGADIYGSGCPNPHSPLPSPLSATPAPSPLSSLPPSSVSSPGPGSFTTSSFPMSPHHTLQSQMMPNSEDPLLSSSPKDFGAGRRKFEFQSYKLITNQNLVDFGLGNGSVAGIVVDNNGEFKLIQTAGLQKANVYVQAGALSPALAFRKEICQVGPKLEQGNINVNVVNGQSMNLQNHIYQQTQVHQQAINPAKFLIQINQANKPNLKHKAMSVPAEQVKEEESLDEDVFLSPSSVPMTASGSPARHYKKRPRLDGPMHCNSGTSSCSAINGSHSYPSRLRRACDRHWDSSYTPPPILDPSRPGSGLYARLHQNERDCVDFSSDDSQGNDGPPPRINIGTRYQATIPQMVENECERLAATEPEMDHLLWDPGIESALTETELEMYLQFACCAAVPGGGRNKEYALHLLHMCRGNIREAMLKLMRPTPSLTSEHPLLSYECQESDRWTSHEMDLFYQSLLKYNKDFGAIAREIGSKSTKQCVQFYYLWKRLCPDEYKRLRLRYGKPKIQSDFGRDGKDTKDLCDAIAAVAELDFSEGKSILHRTLMQTTNERENSATLTTSEGELRLFAYDCQDSFSGSVTVTMAGSAQVARAPSCTGKAGGATGYATVDHTNSQTHTSTEQQLPAPTPLHYPCKICGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01216720;
90% Identity
iTF_01274415;
80% Identity
-