Tpra003697.1
Basic Information
- Insect
- Tricholauxania praeusta
- Gene Symbol
- Prdm14
- Assembly
- GCA_949775025.1
- Location
- OX459028.1:73475609-73477460[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.6 1.1e+03 1.6 0.0 2 9 2 9 1 16 0.87 2 10 0.095 12 7.8 1.7 2 23 223 245 222 246 0.95 3 10 0.085 11 7.9 3.6 6 23 254 271 254 271 0.99 4 10 6.1e-05 0.008 17.8 0.3 1 23 277 299 277 299 0.98 5 10 1.7e-05 0.0022 19.6 3.6 1 23 307 329 307 329 0.97 6 10 0.00053 0.07 14.9 1.6 3 23 339 360 337 360 0.95 7 10 0.00011 0.014 17.1 0.1 2 23 398 420 397 420 0.96 8 10 9.1e-05 0.012 17.3 0.3 2 23 428 450 427 450 0.95 9 10 1.7e-05 0.0022 19.6 0.6 1 23 456 478 456 478 0.98 10 10 9.1e-06 0.0012 20.4 1.9 1 23 484 507 484 507 0.98
Sequence Information
- Coding Sequence
- atgTCTTGCAAACTTTGCGGTAAAAATCTTTTGAATTCAGCGGAGTTATTGGAATTATATTGTGTTGAAGGAAGAGAATTAAAAATTGTGgaattaattcaaaaacataTTCCATTTCTTCAgCTTGACCAGATCTCACAAAATTCCAGTGTTATTTGCCGCAATTGTTGTCAGACCTTAAGTGATTTTCATAAGCTCTATGTGCTTGTAGAAAATGCGCAAAAATCGTACGTAATTAGCGAGAGTGATCCGCTTTTACATGTTGATTTCCAACCTGTGTATGATTGCGTTAAACAGGAACCTGAATATGCTGACTGTACAAATAATGCCAGACTACAGCCCATGTCGGAAGAAGAGATAAATTACCTTGAAGCCGATTTACTTCTACAAAATGTAACGAACACTACAAAGAATGCTGAAAATGATAATGATTGCAAACTTAATTACACTCAGAAGGATGtggaagaaaaaactaaaaagcatTCTGCACTATCGAACGCTTTATTAAAAGTCAGAAAAAAGATCacttcaaataaacaacgtttGAAGAGTGctaaaaattatagcaaatcTGCATCAACAGCTTcagcaaaaacagaaaaaatattagCAAAGGAGAAGGATTCAAAtgattttgatgcatttctatctaaaaactttaaattgaggTGTagcctttgcaatatttctctttcaaattttgctGAAGTGAAATCTCATTTTCGAAAAGAGCATCACATTAATGGATTTGTTTTGTGTTGTGGGAAAAAATTTCGTCATAGATATCGCCTTGTTGATCATGTTCATACTCACCTTAATCCTGATTTGTTCAAATGTTCTGAATGTAATAAAGTTCTAGCTGATCGGCGTGGCTTACAGGAACATCAGCAGTTGcatgaaaaaaaacttgaacgcatttttcattgtaaaacCTGTTCAAAAAGTTACCCAAGGCGATCATCTTTAATGCGCCATATACAAGAACATGTGCctgaagaagaaaagaaaattaattgtcCACAATGTAAAAAGACttttgccACATTTTACTTGATGCATCAGCACTTAAAGataattcatttaaatacaTACTCCAAGATATGTGATATTTGTGGAAACTCTATAAGAGGATCTCGTGAAGTTTTTCAACTGCATCAGCAAGAACACACTGGAGCTCCAAAACCTGAAATTGAGTGTGAAATTTGTGGTTTAAGACTTACTAGCAAATATGGGCTCAATAGGCATGTTAAGGTTGTTCACTTAGAGGAAGCGAAGCCACAGATGTGCACCATTTGCTCGAAAGTTTACCCAACAAAAGCAGCATATAAATCACATATGAATTATGTGCATAATTTAGAGCGCAAGTACCAGTGTTCAATGTGCgacaaaacttttaagaaagcACAGGTGTTGAGAgAACACGTGGCAACACATACTGGTGAAGTTTTATATACCTGCCCAAACTgtccaaaaacttttatttcaaacgcTAACATGCACTCACATCGTAAAAAAGTTCATCGAAAGGAATGGGAAGAATCACGAGAGAAACGAAAACCTCGTAAACATGATATGTTGAACCAAAATAACCGTCGGGATGAAGAGGGTGGAAGCTCAGTTAGAGTGACATATGATGATTTATCTGAAATTCAAGCTCAGTCTAATAGCTttgaataa
- Protein Sequence
- MSCKLCGKNLLNSAELLELYCVEGRELKIVELIQKHIPFLQLDQISQNSSVICRNCCQTLSDFHKLYVLVENAQKSYVISESDPLLHVDFQPVYDCVKQEPEYADCTNNARLQPMSEEEINYLEADLLLQNVTNTTKNAENDNDCKLNYTQKDVEEKTKKHSALSNALLKVRKKITSNKQRLKSAKNYSKSASTASAKTEKILAKEKDSNDFDAFLSKNFKLRCSLCNISLSNFAEVKSHFRKEHHINGFVLCCGKKFRHRYRLVDHVHTHLNPDLFKCSECNKVLADRRGLQEHQQLHEKKLERIFHCKTCSKSYPRRSSLMRHIQEHVPEEEKKINCPQCKKTFATFYLMHQHLKIIHLNTYSKICDICGNSIRGSREVFQLHQQEHTGAPKPEIECEICGLRLTSKYGLNRHVKVVHLEEAKPQMCTICSKVYPTKAAYKSHMNYVHNLERKYQCSMCDKTFKKAQVLREHVATHTGEVLYTCPNCPKTFISNANMHSHRKKVHRKEWEESREKRKPRKHDMLNQNNRRDEEGGSSVRVTYDDLSEIQAQSNSFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972487;
- 90% Identity
- -
- 80% Identity
- -