Tpra031848.1
Basic Information
- Insect
- Tricholauxania praeusta
- Gene Symbol
- -
- Assembly
- GCA_949775025.1
- Location
- OX459031.1:46443733-46461684[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.15 20 7.1 2.2 2 23 186 207 185 208 0.95 2 19 0.066 8.6 8.3 1.4 3 19 252 268 251 270 0.94 3 19 4.3 5.7e+02 2.6 2.0 2 23 283 304 283 304 0.88 4 19 0.004 0.52 12.1 1.6 3 23 313 334 312 334 0.92 5 19 0.00054 0.071 14.8 0.6 2 23 341 362 340 362 0.95 6 19 0.0012 0.16 13.7 7.5 1 23 368 390 368 391 0.96 7 19 0.00073 0.096 14.4 3.9 1 23 397 419 397 419 0.99 8 19 8.3 1.1e+03 1.7 0.0 3 20 430 447 429 448 0.90 9 19 1.3e-05 0.0018 19.9 0.5 1 22 467 488 467 491 0.90 10 19 0.71 93 5.0 5.2 1 23 496 518 496 518 0.97 11 19 0.017 2.3 10.1 0.1 1 23 534 559 534 559 0.93 12 19 0.0032 0.42 12.4 0.9 2 20 565 583 564 585 0.91 13 19 0.009 1.2 11.0 2.1 1 23 592 615 592 615 0.96 14 19 9.9e-05 0.013 17.2 1.1 2 23 621 643 620 643 0.92 15 19 0.00036 0.047 15.4 1.1 2 23 647 669 647 669 0.96 16 19 2.1e-05 0.0027 19.3 0.5 1 23 675 698 675 698 0.96 17 19 0.59 77 5.3 0.4 1 23 703 725 703 725 0.97 18 19 0.00012 0.016 16.9 1.9 1 23 731 753 731 753 0.99 19 19 2.2e-05 0.0028 19.2 0.9 1 23 759 782 759 782 0.96
Sequence Information
- Coding Sequence
- atgcCACCAAAGTTCAAACTAAAATGTTTGCACTGTCGCAAGAGTGGCAATACGGAGTTCCATGAAATCTTCGATGAAGCTGGAATAGATCTACAACTAGATGCACTACTGCAGGAGCACTTTCAACTGAGTGTGTCTCACATTCCAACGGAACATCAAGTTTTATGTGAACAGTGTGTTAATGAATtgattgaattgtttgacgACTCAGAGAGACAAAAGGAACTGTCTCAAGCTGGTGCCGACAATTTGGACGACAAGACTGATGATACAGGAGTAGGTGTGGCCAATAACAGTAAAGAAATTCAATACGAGTGCTCAAGAGAACAAGAAATTTCCGCTGATGAAGAGGAATTTTTGGAGATTGACGACAGCTTAGTAACCTTGGATGTTGAAGAAGATAAAGCTTTAAATGTCGAAGCTGTAGAAGAAAAGGATGTGCTAATCGCTTATCCCTTTGCTGAATTGAACGTTTTTGACAATGTTGATTTACAGCCCTACGCCGATTCCATAATTAATAGCAATCTAGAGGAAATCCATCTAGAACGGAAAAGTCAATGCAGTgTATGCTTAGAAAAATTCGAATATCATCAGGATATGCTGGCCCATATAAAACTACATCATATTACTAAAAATGGACATTTTGTTTGTCCATTGGAAAACTGTGAAGAGTTACTTGAAAACGAAAGGATTTTGGCGAGACATATAGTCTTAAGACACTACGATTTATACGGAATTTCCATATTTGGAGCGTGTCCTGACTGCGAAATGaccttttcaaactttttggattttaataagCATTCCTGTTGTAGAACATTAAAAAATAGAGGAAGGATTTTAAACTACTGCAAATACTGTGAAATGGAATTTCCAACTTTTAGAAAgtatcGCTTTCATCTTCAATTTCATATGACAAAGAGACGTCCGAAAATTTGTCTTCTATGTGATAAGTCTTTTAGCAATGTAGACACATTTTTCAAACATGTGCATTACGAACATGAACCATCAGATCGACTAATATGTGTTAAaTGCGATCgcatttttaacaataaatctTTATACGAAACACATTTGTCAAATCATGATCTACCCAAAAAGTTCAAATGCAATAATTGTTccaagtcatttgcttacaaaTGTAAGCTAAAAAGTCATTTGGAATCCCACCATAATAAGAAAGAACCTTTTAAATGTGAGATATGCAGCAAAGACTTTCTAAGTAAAGCTAATTACCGACATCACCTCAAAACTCACGAGCCATATGCAGATGTGCAAGCCAATATTTGCTCAGTATGTGGACTTATTGGAAGAGATAAAGAAGAAATATTGgaACACCAAGTGTTTTGTTCTAAGTGTTTTGAAGCACAAATTGATGAAGAAATTCTTGTTGAAGTGTTTGTCTGCGAATATTGCGAACAGTCTTTTAAAACGCGTTCAGATCTAAAGATGCATCGTGCCTCAGGTATACATCTGGACAAAGTATATCACTGCCCTTTCTGTACCGTGAAATTTGATGAGCTACGCAAGTTACGAGTTCATTTTCACACTCATAAAATATACGAAACAAACAAGAACTCATTTCCATTAATTAGACAGTACATGTGCGATGCAGGTGATTGCGAGTATTCAAGTACCACCTGGATGTCGTTAAACAGTCACAGAATCGCAAAACATAAAGAGCTGCAACTTATATGCGAGAAATGTAATAAACGATTCAATAACCGTGATGATTTTGATACACACACGTCAAAATGTCAGAAGGATGGAAAGTATTACTGCCAGTTTTGTGAAAAACAATGTCCAACAAAAATGTCGCTGTCTGTGCATATCGCAAGGAGTCACAACAATAaaAACGTTAAATGCTCCATATGCAATGCCTGTTTTAAGGATGAGGAGAGCCTTCAAAAACACATTGAGTTTGAACACGAAGAAGCTGAATGCAACCTgtgtaacaaaaaaatcaaaaataagcgTAATCTTTTGCTACACCAACGCATTGTACATTTCAATGACAAACGATTCTTTtgcgaaatttgcaaaaaaggcTTTTTCAACAAAAGCGATATGGAAGCTCATataaaaatgGTGCATCCATCGACTAGTTATAAATGTTCGGAATGTGCTTTTGAAACCAATTATGAGAAATCTATGGATATACACATGGCTCGACACAATAACAACTTCAAATTCAAATGCACAATATGTTTAAAAGAATTCACACGAGAAAGTGTTATGAAACTACATATGAAGCGTCACCTGTCCAAAAGAGAattcatGTGCAAAAATTGTGATGCTTCATTTGTGACAAGGTGGTTATTAAACAGGCACATAAAAAACAAGCATACAGAGAACGATAATAACACGAACTGCATGCCTACAAATTTAAGTGTACTTAAACTTCAGAAAAAGTATAGGATTGTAGAAGTAAACGAACCAATTGTGGCAGATGACGAAGCCAATAACGTCGATAATTTTGATGCGTACATAGCTTATGAAGATGATAGTAATGGTTATATTAATGAATATGATATGGTTGAAGAAAATAGCAATCAGTGTACTGAAGATGTGGTTTTAGAATTTTCTGAAGAAAGTAAGATATTTCCATAA
- Protein Sequence
- MPPKFKLKCLHCRKSGNTEFHEIFDEAGIDLQLDALLQEHFQLSVSHIPTEHQVLCEQCVNELIELFDDSERQKELSQAGADNLDDKTDDTGVGVANNSKEIQYECSREQEISADEEEFLEIDDSLVTLDVEEDKALNVEAVEEKDVLIAYPFAELNVFDNVDLQPYADSIINSNLEEIHLERKSQCSVCLEKFEYHQDMLAHIKLHHITKNGHFVCPLENCEELLENERILARHIVLRHYDLYGISIFGACPDCEMTFSNFLDFNKHSCCRTLKNRGRILNYCKYCEMEFPTFRKYRFHLQFHMTKRRPKICLLCDKSFSNVDTFFKHVHYEHEPSDRLICVKCDRIFNNKSLYETHLSNHDLPKKFKCNNCSKSFAYKCKLKSHLESHHNKKEPFKCEICSKDFLSKANYRHHLKTHEPYADVQANICSVCGLIGRDKEEILEHQVFCSKCFEAQIDEEILVEVFVCEYCEQSFKTRSDLKMHRASGIHLDKVYHCPFCTVKFDELRKLRVHFHTHKIYETNKNSFPLIRQYMCDAGDCEYSSTTWMSLNSHRIAKHKELQLICEKCNKRFNNRDDFDTHTSKCQKDGKYYCQFCEKQCPTKMSLSVHIARSHNNKNVKCSICNACFKDEESLQKHIEFEHEEAECNLCNKKIKNKRNLLLHQRIVHFNDKRFFCEICKKGFFNKSDMEAHIKMVHPSTSYKCSECAFETNYEKSMDIHMARHNNNFKFKCTICLKEFTRESVMKLHMKRHLSKREFMCKNCDASFVTRWLLNRHIKNKHTENDNNTNCMPTNLSVLKLQKKYRIVEVNEPIVADDEANNVDNFDAYIAYEDDSNGYINEYDMVEENSNQCTEDVVLEFSEESKIFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972432;
- 90% Identity
- iTF_00972432;
- 80% Identity
- -