Tpra010056.1
Basic Information
- Insect
- Tricholauxania praeusta
- Gene Symbol
- -
- Assembly
- GCA_949775025.1
- Location
- OX459028.1:170950163-170975365[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00065 0.085 14.6 0.4 1 23 262 285 262 285 0.95 2 19 0.0079 1 11.2 1.6 2 23 302 322 301 322 0.97 3 19 8.4e-05 0.011 17.4 1.6 3 23 339 359 338 359 0.98 4 19 0.003 0.39 12.5 0.4 1 23 367 390 367 390 0.96 5 19 0.00084 0.11 14.2 0.5 1 23 398 420 398 420 0.97 6 19 2.9e-06 0.00038 22.0 0.7 1 23 425 447 425 447 0.99 7 19 0.00021 0.027 16.2 5.7 1 23 453 475 453 475 0.98 8 19 0.063 8.2 8.3 2.2 1 23 480 502 480 502 0.94 9 19 7.4 9.6e+02 1.8 2.1 1 23 507 532 507 532 0.80 10 19 1.2 1.6e+02 4.3 0.9 1 21 540 560 540 563 0.75 11 19 0.00046 0.061 15.1 0.5 1 23 571 593 571 593 0.97 12 19 1.3e-06 0.00017 23.1 0.6 1 23 598 620 598 620 0.99 13 19 0.0054 0.71 11.7 4.3 1 23 626 648 626 648 0.98 14 19 1 1.4e+02 4.5 5.3 1 23 653 675 653 675 0.94 15 19 1.3 1.7e+02 4.2 2.0 1 23 712 734 712 734 0.92 16 19 1.4e-05 0.0019 19.8 0.3 1 23 759 781 759 781 0.99 17 19 0.0002 0.026 16.2 0.5 1 23 786 808 786 808 0.93 18 19 0.0047 0.61 11.9 1.4 1 23 814 836 814 836 0.96 19 19 1.4e-05 0.0018 19.8 1.2 2 23 842 863 841 863 0.94
Sequence Information
- Coding Sequence
- ATGAGTGATTGCGAAGATGGCGTTCAGTGCCGCTCGTGTTTGAGCAAAACTGCATCGGAGTATATTCACATGGAATCCTCTATGGCGGGCGAATACTCGTACatagaatgttttaatatttgcaccAAACTTAACGCCAATCTTGACGATGGATTTCCAGACTTCATTTGTGATAAGTGTTCGCAAGATCTCCAGGTgtcctttaattttattaatgaagcGCGGATAGCGGATGCGACGCTACGTAAAAAATTGCCAGCACCAAAACAACAGATTGCAAGCTCTACCCAGGATGAAAAAGAATATGTATGGACAGTAGAAGACGAAGCAAACTTGCAGAAAGAAGATATGTTTGAGGTTACACAAATGGAATTTATGGATAATGATGACTATCAGGAATTAGAAACATGTGAAGACGATTTGATAATAGAAGATGTTAAAGTAGAGGATGAACAAATCGAACAGAGTTATCAGTTGGAATCAACGGAACAATCTTTCAAAGAGGAACCACTAGAGCAATTATCACCGTCTCAAACATATTCAGAAGATGAACAACACGACGATGAGCAAAACGAAGATGAGCAAAACGAAGATGAACAACACGAAGATGAAGAACACGAAGATGAACAACACGAAGATGAACAACACGAAGATGAACAAAACGAAGATGAACAAAACGATGATGAGCTATCAAAAGAATGCGATGAAAATGGTGAAACTGTTAAGAATTTTGAAGCTAACGTTACAAACACTAGAAGAGGAAAAGTATATCGAGAACGTAATTACACATGTATTGTTTGCGGGAAAGGCTATCAATATAACATTAATCTGCGCAATCACATGCGACTTATGCATAGGGAAGAATTTAAAAAGCAGATTAAAGGACCTGAAATGGAAAGTGTGCGATGCGAAGTTTGcaaaaggatttttttgaagaaaaatatggaaaagcaCATGCAAAAGCACGGACGCCAAAACGAAAAAGAATCCTCCACGGAGCAACCAATGCTACTTTGTGCTTATTGtcCCAAGACATGCACGTCCAGATCTAATCTCATAAATCATGAGAAAATACACAACCCATCTCGTGTACGTAAATTTGCCTGCGAATATTGTGATATGAGATTCTATAAAAGTCGAACCATGATTGACCACGTTAAGGTTGTACACATAAATAGTAATGACAGACCGCATGTTTGCCCAGTATGtggtaaaaattataaagccaGAGCAGGACTGAGTACTCATTTCAAAGTGCATTTAAGTAAACGTTTCGAGTGTACGCAGTGTGATAAAAAGTATCCACGGGTGAATGAATTGACTATACACATGCGTACTCACACTGGCGAAATGCCGTTTAAATGTAATTTGTGTGATAAATCATTTAGGTATCAACATCGACTGACTTATCATTTACAAAATCATATGGGCGTGAAACACAAGTGTAAGGATTGCAATGCACTTTTTGATAGTGCTTCCAGGTTGCGCTTGCATAAGTTTGAACATACTGGAGCACCGTATCGTTGTGATGAATGTCCAGATGCACAGTATATAAAAAGAGATAGATCTAATCTTATAAATCATGAGAAACTACACAACCCATCTCGTGTACGTAAATTTGCCTGCGAATATTGTGATATGAAATTCTATAAAATTCAAACCAAGGTTGACCACGTTAAGTTCATCCACCTAAATAGTACTGAAAGACCGCATGTTTGTCCAATATGtggtaaaaattataaagccaGAGCAGGACTGAGTACTCATTTTAAAGTGCATTTAAGTAAACGTTTCGAGTGTACGCAGTGTGGTAAAAAGTATCCACGGGTGAATGAATTGACTATACACATGCGTACTCACACTGGCGAAATGCCGTTTAAATGTCACTTGTGTGAGCAATCGTTTAGGATTAAGAACCGACTCACTCTTCATTTACAAAAGCACTTGGGCGCCAAACACAAGTGTAAGGTTTGCAATGCACTTTTTGATACTCGTCTTAAGTTACGCCATCATAAGTATGAACACACTGGATTACCGTATCGTTGTGAAGAATGTCCAGATGCACAGTATTCGAGAAGAATtagGATTCAGAGTCGACTTACTCATCATTTACAAAATCATTTGGGCGTGAAACATAAGTGTAAGGTTTGCAATGCACTTTTTGATAGTGGTTCCAGGTTGCGCTTGCATAAGTTTGAACATACTGGATTACCGTATCGTTGTGAAGAATGTCCAGATGCACAGTATACAAAAAGAAATCGCACCGAAAGACGATATGTTTGCCCAGTGTGCGGTCGAAGTTACAAAGAAAATAACGTACTGACTACGCACTTAAAGACACACGAAGAAAAACGTTTTCCATGCATCCAGTGTGAAAGGAAATACACGCGTCAGGTAGACTTAAATGTGCACATGCGTAGTCACACCGGAGAACTCCCTTATGCGTGTCATTTGTGCGATAAGCGATTTGCTATCAAAGTTCGACTTACATATCACCTGCAAGATCATGTGGATGCTGCGCAGAAGTGTAAGATTTGTGATAAAGTTTTCAGCAACCGTAACCAATTGCGTTTACATAAAGCTGAACATTCTGGATTCCCATACATTTGCGAGGAATGCCCTAATGCCAATTTTCACAAAAGAGATCGTTTTCGTGGTCATATAGTGCGCCATCACAAACGCACGCCCAGTGAGGAAGAATTAACTGCTAATTTCCGACGCAAttataataacaatttaaattcaGCAAGAATGAAGGATATACAAATTTAG
- Protein Sequence
- MSDCEDGVQCRSCLSKTASEYIHMESSMAGEYSYIECFNICTKLNANLDDGFPDFICDKCSQDLQVSFNFINEARIADATLRKKLPAPKQQIASSTQDEKEYVWTVEDEANLQKEDMFEVTQMEFMDNDDYQELETCEDDLIIEDVKVEDEQIEQSYQLESTEQSFKEEPLEQLSPSQTYSEDEQHDDEQNEDEQNEDEQHEDEEHEDEQHEDEQHEDEQNEDEQNDDELSKECDENGETVKNFEANVTNTRRGKVYRERNYTCIVCGKGYQYNINLRNHMRLMHREEFKKQIKGPEMESVRCEVCKRIFLKKNMEKHMQKHGRQNEKESSTEQPMLLCAYCPKTCTSRSNLINHEKIHNPSRVRKFACEYCDMRFYKSRTMIDHVKVVHINSNDRPHVCPVCGKNYKARAGLSTHFKVHLSKRFECTQCDKKYPRVNELTIHMRTHTGEMPFKCNLCDKSFRYQHRLTYHLQNHMGVKHKCKDCNALFDSASRLRLHKFEHTGAPYRCDECPDAQYIKRDRSNLINHEKLHNPSRVRKFACEYCDMKFYKIQTKVDHVKFIHLNSTERPHVCPICGKNYKARAGLSTHFKVHLSKRFECTQCGKKYPRVNELTIHMRTHTGEMPFKCHLCEQSFRIKNRLTLHLQKHLGAKHKCKVCNALFDTRLKLRHHKYEHTGLPYRCEECPDAQYSRRIRIQSRLTHHLQNHLGVKHKCKVCNALFDSGSRLRLHKFEHTGLPYRCEECPDAQYTKRNRTERRYVCPVCGRSYKENNVLTTHLKTHEEKRFPCIQCERKYTRQVDLNVHMRSHTGELPYACHLCDKRFAIKVRLTYHLQDHVDAAQKCKICDKVFSNRNQLRLHKAEHSGFPYICEECPNANFHKRDRFRGHIVRHHKRTPSEEELTANFRRNYNNNLNSARMKDIQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -