Tpra008360.1
Basic Information
- Insect
- Tricholauxania praeusta
- Gene Symbol
- -
- Assembly
- GCA_949775025.1
- Location
- OX459028.1:137939976-137942580[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.1e-07 4e-05 25.1 0.1 2 23 251 272 250 272 0.96 2 12 0.01 1.3 10.8 0.9 1 23 279 301 279 301 0.94 3 12 0.00032 0.042 15.5 0.4 1 23 319 341 319 341 0.98 4 12 0.0019 0.25 13.1 2.5 1 23 363 385 363 385 0.98 5 12 1.6e-06 0.00022 22.8 2.1 1 23 391 413 391 413 0.99 6 12 4.4e-05 0.0057 18.3 4.1 1 23 419 441 419 441 0.98 7 12 2.7e-06 0.00035 22.1 0.7 1 23 447 469 447 469 0.96 8 12 0.00042 0.054 15.2 0.2 1 23 475 497 475 497 0.98 9 12 0.00048 0.062 15.0 0.7 1 23 503 525 503 525 0.96 10 12 0.0045 0.58 12.0 7.4 1 23 531 553 531 553 0.98 11 12 3.4e-07 4.4e-05 24.9 1.0 1 23 559 581 559 581 0.99 12 12 0.00043 0.057 15.1 0.1 1 23 587 609 587 609 0.95
Sequence Information
- Coding Sequence
- atggaTTCGGAATCGTTGTCACTAAAATATTTTCCCAAAACTTGTCGTGCCTGTATGTGCCAAGAGAAGGAAAGTGAGCAGGGGCTTCaatctatttttgattttctcgAAGAAACTCGAGATTTGAGTATCGCAGAGTTGCTGAGAAGTACGGCACCTCAAGTTACTATCCAAGAGACAGATGACCTGCCTAAGCAAATCTGCACCCATTGCTTAAGTCGACTGCTAAGTGCCCATGACTTTCAGCAAATGTGCTTACGTTCCGACTTTCATATGCGTAGTCTACTGGAGTATAGTGTTGAACCAAAATACTCGCAATCAGTTGAAGGAACCGCTGCCACTTTGAAGGTTCCTTCCGTAGATCCGTTGCAAGCTGAATGTGTAGCAGAAGACATAGATATTGCTGGAGAACTGAGACATTGTCTGAAGTTGGAATTGCACGAGGAGGAAGTGCCTTACAATTATAATTTTGCTGATTGTTCTAACGTTGAAAGCAAAACTCAAGAAAACGATGAGGTTATTCTGGTAAATCctgatttaaataatgaaataagagGAAATGCAGACACAAACTCTGACTTTAGCGACAACAGATCAGAGAAAGGAGACGATCTAAGTGCCTCAGATTGGGAAAAAGAAAAGATTGGAAAAAAaaaaatctcaACATTGGATGCCGAATCAGAAAAGGATGATTTCAATGATGTTGAACTAGAGAAACCCAATGCTTCGTGTAGACGGACTATTTCTGTGCCATGTCCTGAGTGTGGTAAAATCTTCGATCGCTCTTATAGCTTAAGTCGCCATATGAGCGTACATAATCCAACAGGAAAACCGTTCGAATGTATTAAATGTAAATATCGATTTGCAACAACCGCCTTACTTAAGCGTCATGAAGTCACACATAACATAAGTTGGGCAAAAGCAAATGAATCCACTAACTTCAATCCAGAAGGATATAAATGTATTGACTGCCCTAGACGCTTTGCAAAACGTGAATCGCTTTCAGCTCATTTGCAGTCTCATAAAAAGTCAAAGATAATAAAAGAAACGTCGAAAGAAACTTGTTATGCCACATCAACAGAAATGTTTTCTTGTGACTTGTGTCCAAAACAATTCCAAAAGCTCAAACAAATAAAGAGACATTCACGTACTCATGATAAGAATAAACAATTCAAATGTAATCTCTGCGATAAGGCTTACAGCTCAAATGCACATTTGCAAGATCATCTAAATAAGCACAATGGCGTTAAGCCTTATGTCTGTAAATATTGCAGTAAATctTTCCAACAATCATGCACACTAAAGGATCATGTTCGCATTCATACAGGTGAACAGCCTTATTTGTGTTCCGAGTGCGGTAGGGCATTCAACAGCTCAAGCAATATGAAACAACATTTGTTACGACATGCTGGTGTAAGGCGTTACGAATGTCCTGAATGTCCAAAAAAATTCCCCTGCCTTAGTGATCTTGGTTCCCATATGGccgtacataaaaaaattaagccacaTATCTGTGATGTTTGTGGTGCTGCTTTTGGGAAACCATTTCagcttaaaaaacataaaatgtatcACAATGGAGACAAACCGCACAAGTGTGAATATTGCGAAATGAGGTTCGTCTGTGCCGATCACATGCGTCGTCATATGCGTACGCATACTGGTGAAAAACCGTACAAATGCAAATATTGCGAACGCGCCTTCGCGCAAAGCAACGATTTGATTAAACATCTCCGTTCGCATATCGGTGAAAATGTTTACGAATGTGAATTATGTCCGAAAGCTTTTCGCTTAGCCGCAGAGTTGCGCGAGCATTTTTCGCTACATAAGAACGATAGTGATGAAATGCGAACTAAAAATGCACAGGAACTATCGGAAAAAATTGCGCGTAATGCTATGTCTTACGTAAATTCGATGTGtgcgattttgaaaaaagaacattAA
- Protein Sequence
- MDSESLSLKYFPKTCRACMCQEKESEQGLQSIFDFLEETRDLSIAELLRSTAPQVTIQETDDLPKQICTHCLSRLLSAHDFQQMCLRSDFHMRSLLEYSVEPKYSQSVEGTAATLKVPSVDPLQAECVAEDIDIAGELRHCLKLELHEEEVPYNYNFADCSNVESKTQENDEVILVNPDLNNEIRGNADTNSDFSDNRSEKGDDLSASDWEKEKIGKKKISTLDAESEKDDFNDVELEKPNASCRRTISVPCPECGKIFDRSYSLSRHMSVHNPTGKPFECIKCKYRFATTALLKRHEVTHNISWAKANESTNFNPEGYKCIDCPRRFAKRESLSAHLQSHKKSKIIKETSKETCYATSTEMFSCDLCPKQFQKLKQIKRHSRTHDKNKQFKCNLCDKAYSSNAHLQDHLNKHNGVKPYVCKYCSKSFQQSCTLKDHVRIHTGEQPYLCSECGRAFNSSSNMKQHLLRHAGVRRYECPECPKKFPCLSDLGSHMAVHKKIKPHICDVCGAAFGKPFQLKKHKMYHNGDKPHKCEYCEMRFVCADHMRRHMRTHTGEKPYKCKYCERAFAQSNDLIKHLRSHIGENVYECELCPKAFRLAAELREHFSLHKNDSDEMRTKNAQELSEKIARNAMSYVNSMCAILKKEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972417;
- 90% Identity
- iTF_00972417;
- 80% Identity
- -