Basic Information

Insect: Tricholauxania praeusta
Gene Symbol: -
Assembly: GCA_949775025.1
Location: OX459028.1:137967125-137970078[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.2e-08 6.8e-06 27.5 0.2 2 23 176 197 175 197 0.97

2 11 0.0077 1 11.2 0.9 1 23 204 226 204 226 0.94

3 11 3.1e-06 0.0004 21.9 1.7 1 23 240 262 240 262 0.99

4 11 5e-05 0.0065 18.1 3.8 1 23 284 306 284 306 0.98

5 11 2.2e-07 2.9e-05 25.5 1.2 1 23 312 334 312 334 0.99

6 11 3.9e-06 0.0005 21.6 2.1 1 23 341 363 341 363 0.98

7 11 1.5e-06 0.00019 22.9 0.6 1 23 370 392 370 392 0.96

8 11 2.5e-05 0.0033 19.0 0.4 1 23 398 420 398 420 0.98

9 11 0.00027 0.035 15.8 2.1 1 23 426 448 426 448 0.96

10 11 0.22 29 6.6 7.1 1 23 454 476 454 476 0.98

11 11 7e-07 9.2e-05 23.9 0.7 1 23 482 504 482 504 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.2e-08	6.8e-06	27.5	0.2	2	23	176	197	175	197	0.97
2	11	0.0077	1	11.2	0.9	1	23	204	226	204	226	0.94
3	11	3.1e-06	0.0004	21.9	1.7	1	23	240	262	240	262	0.99
4	11	5e-05	0.0065	18.1	3.8	1	23	284	306	284	306	0.98
5	11	2.2e-07	2.9e-05	25.5	1.2	1	23	312	334	312	334	0.99
6	11	3.9e-06	0.0005	21.6	2.1	1	23	341	363	341	363	0.98
7	11	1.5e-06	0.00019	22.9	0.6	1	23	370	392	370	392	0.96
8	11	2.5e-05	0.0033	19.0	0.4	1	23	398	420	398	420	0.98
9	11	0.00027	0.035	15.8	2.1	1	23	426	448	426	448	0.96
10	11	0.22	29	6.6	7.1	1	23	454	476	454	476	0.98
11	11	7e-07	9.2e-05	23.9	0.7	1	23	482	504	482	504	0.99

Sequence Information

Coding Sequence: ATGTGCATCGCGTCGGATACATATATGCGCAGCCTTTTGGTCAGCAATAGACTTGCAAGCCATAGTAGCACTAACAGTAACGCTACGGAGAAATACGAAGACATCAACCACTTAGTAATAGCacaacaaacagaaaaatttaatactccTCTTGTAACACAGGGCTTTCACAAATCGACATGCTctataaaagttgaaaagaatgaTGAAGTGGTGAGTGAATTAGTTATATTAGAACCATCTGAAGAATTCCAAGATAATAAAGTAATGGACTTAGAGTGGAGTGACGGTGATGACATaccGCTTAAAACATGTAACCTGAAGCTTAATCCACTAGTAACAGAGGAGTTTCAAAACTGTATGAAATATGAAGTCAATGATGCAGAAGTGCTAGAATGTGATTTGAACGAAATATTTATCACAAAAACCAAATTGGAATGTAATGAGGCGCATGATGACAATGAATTTACTACCGAGTCGGGTGCTGATAATATCAGGCAAGTTGCAGGACGTACCAATTCTGTGCCATGCCCTGAGTGTGGTAAAATCTTCAATCGCTCTTTTAGCTTAAGACGCCATATGAACGTTCATAATCCAACAGGAAAACCGTTCGAAtgtataaaatgtaaatatcgATTTGCAACAACCGCCTTACTTAAACGTCATGAAGTCACACATAGCATAGCAGACGAAGCCGCAAGCTTCAATCAGGAAGGATATAAGTGTAATGACTGCCCAAAACGTTTTGCAAAACATGAATCGCTTTCAGCTCATTTGCAGTCTCATAAAAAGTCAAAGGTAATAAAAGAAACGTCGAAAAAAACTGGTTATGCCACATCAACAGACATGTTTCCTTGTACCTTGTGTCCAAAACGATTCCAAAGGCACATACAACTCAAGAGACATTCGCGAACTCATGCTGacaataaaaacttcaaatgtAATCTCTGCGATAAATCATATAGCTCGAATGCCAATTTACAAGATCATTTAAATAAACACAATGGTGTAAAGGCTTCTTATGTCTGTAAATATTGCAGTAAATctTTTCAACAATCCCGCACACTAAAGGATCATGTTCGAATTCATACAGGTGAGCAACAACCTTATTTGTGCTCCGAGTGCGGTAGGGGATTCAACAGTTTAAGCAATTTGAAACAACATTTGCTACGACATGCTAGTGTAAGGCGGTACGAATGTCCTGAATGTCCAAAAAAATTCCGCTGCCTTAGTGATCTTGCTTCCCATATGGCcgtgcataaaaaaaatcagccaCATATATGTGATGTTTGTGGTGCTGCTTTTGAGAAACCATTTCatcttaaaaaacataaaatgtatcACAATGGAGAAAAACCGCACAAATGTGAATATTGCGAAATGAGGTTCGTTTGTACCGATCGGATGCGTCGTCATATGCGTAAGCATACGGGTGAAAAACCGTACAAATGCAAATATTGTGAACTCGCTTTTGCGCAAAGCAACGATTTGGTTAAACATCTCCGTACACATATCGGTAAATAA
Protein Sequence: MCIASDTYMRSLLVSNRLASHSSTNSNATEKYEDINHLVIAQQTEKFNTPLVTQGFHKSTCSIKVEKNDEVVSELVILEPSEEFQDNKVMDLEWSDGDDIPLKTCNLKLNPLVTEEFQNCMKYEVNDAEVLECDLNEIFITKTKLECNEAHDDNEFTTESGADNIRQVAGRTNSVPCPECGKIFNRSFSLRRHMNVHNPTGKPFECIKCKYRFATTALLKRHEVTHSIADEAASFNQEGYKCNDCPKRFAKHESLSAHLQSHKKSKVIKETSKKTGYATSTDMFPCTLCPKRFQRHIQLKRHSRTHADNKNFKCNLCDKSYSSNANLQDHLNKHNGVKASYVCKYCSKSFQQSRTLKDHVRIHTGEQQPYLCSECGRGFNSLSNLKQHLLRHASVRRYECPECPKKFRCLSDLASHMAVHKKNQPHICDVCGAAFEKPFHLKKHKMYHNGEKPHKCEYCEMRFVCTDRMRRHMRKHTGEKPYKCKYCELAFAQSNDLVKHLRTHIGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -