Basic Information

Insect: Tricholauxania praeusta
Gene Symbol: -
Assembly: GCA_949775025.1
Location: OX459028.1:142557497-142559976[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.4e-05 0.0019 19.8 0.6 2 23 227 248 226 248 0.91

2 12 2.7e-05 0.0035 18.9 1.2 1 23 254 276 254 276 0.97

3 12 8.7e-07 0.00011 23.6 0.2 1 23 291 313 291 313 0.99

4 12 6.8e-05 0.0088 17.7 2.9 1 23 322 344 322 344 0.99

5 12 1.5e-05 0.0019 19.8 0.8 1 23 350 372 350 372 0.99

6 12 9.7e-07 0.00013 23.5 2.7 1 23 378 400 378 400 0.98

7 12 6.1e-06 0.0008 21.0 1.2 1 23 406 428 406 428 0.95

8 12 0.0029 0.38 12.5 1.3 1 23 434 456 434 456 0.99

9 12 0.00016 0.021 16.5 4.5 1 23 462 484 462 484 0.96

10 12 0.0011 0.14 13.9 5.7 1 23 490 512 490 512 0.98

11 12 1.1e-05 0.0014 20.2 1.2 1 23 518 540 518 540 0.99

12 12 1.1e-05 0.0014 20.2 0.1 1 23 546 568 546 568 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.4e-05	0.0019	19.8	0.6	2	23	227	248	226	248	0.91
2	12	2.7e-05	0.0035	18.9	1.2	1	23	254	276	254	276	0.97
3	12	8.7e-07	0.00011	23.6	0.2	1	23	291	313	291	313	0.99
4	12	6.8e-05	0.0088	17.7	2.9	1	23	322	344	322	344	0.99
5	12	1.5e-05	0.0019	19.8	0.8	1	23	350	372	350	372	0.99
6	12	9.7e-07	0.00013	23.5	2.7	1	23	378	400	378	400	0.98
7	12	6.1e-06	0.0008	21.0	1.2	1	23	406	428	406	428	0.95
8	12	0.0029	0.38	12.5	1.3	1	23	434	456	434	456	0.99
9	12	0.00016	0.021	16.5	4.5	1	23	462	484	462	484	0.96
10	12	0.0011	0.14	13.9	5.7	1	23	490	512	490	512	0.98
11	12	1.1e-05	0.0014	20.2	1.2	1	23	518	540	518	540	0.99
12	12	1.1e-05	0.0014	20.2	0.1	1	23	546	568	546	568	0.98

Sequence Information

Coding Sequence: ATGAGCAATTCAGAACAAATTGCGGAGCATATGTGTCGCGCTTGTATGTGTAAGCACCAGaactttcattcaatttatgACGAAGTGGACAAAACGGTGAAGATCTGCGAAATGTTGGCCACCACAATACCGCAGATCATTATCCACAGCAACGACCAACTGCCCAAGTTAATATGTGTACCATGCCTGAACAAACTAAATATCACTTATCAGTTCCAGCAAATGTGCATCGCTTCGGACAAGCATATGCGAAGTCTACTGCTCGACTTAGTGAAAAATCTTAGTTGCAATATGGGTCAGCAGACAGAAGCAACACAAGTGACAACAAAGCTGGAGTGCAATCCAATAGTAGCGGAGGATTTTCTCAAGCTACAAAGCTGTATGAAAACTGAGATAAACGCTGATGAAGTTAAAGAATTGGACTTGGAGGCATTTTTGGAAGCACGTGCGAcggcaaaaagtgaaaaaattttagaagaatCTGGCGAAGAATGGCGCCTTGCAGATGGCATATCTTCGGAGTGGAGTGCATGTGACGACAGTGACTACAAAGGAGAAAAATCAACGTCTAAAATAAAAAGAGCAAAGAAAGAGCTGCGCACATCAAATATATATAATGAAACAGGCTTTGATGAAATAGAAAAACCTAATAAACGCAATCGTCGCAAAAGCGAGTTACCCTGTCCACATTGTGATAAAGTTTTTGATCGTCCCTACCGTCTAAAGCGGCACTCTGGCGTACATCTAGAGACACGTCcattttcttgtgaaatttgCAATTATCGTTTTACAACCGTATATCAACTAGCGCGCCATAAAGTTACTCATGAAGATGTTAAATCAGTAGCACCATTGCCACCGCTCGAAGGTTATAAGTGTCCAGATTGTCCAAGACGTTTTGAAAAGCGCGAATCATTGGCAGCACACATACAAAGTCATCGCAAAACTGATCCAGGCCAAGTTTTCAAATGTGatttatgtccgaaaaaatttcgaaaatttacaACACTCTCTCAGCATGCACGTACACATccagaaaaccaaaaatttaagtgTACACTTTGCGAAAAAGCATTTGGAGTGAATGCACATCTTATAGAGCATATGAACAAACACAATGGTTTGAAGCCATTCGTTTGTGATTATTGTAATAAAGcatttcatcaaaatagcaCACTTAAAGAACATCAACGCGTACATACTGGTGAAAAACCATTTCTCTGTTCACAATGCGGTAAATCTTTTCAAAATGCCAGCAATATGCGGCAACACCTGTTACGTCACTCTGGCGAAAAACGTTATCAGTGTCCAGAGTGTCCCAGCAAGTTTGCATGCCAGTCGGATCAAATAAAGCACATGTCCACACATCGTACCGTCAAACCGCATGTCTGTGATATTTGCGGTTCACGTTTTACGCGCTCGTATACATTAAACAAGCATAAACATATACACACTGGCGAGCGTCCACATAAATGCGACGAATGCAATATGACGTTTGTTTTCATTGAACACATGAGACGACACAAGCGTACACATACGGGTGAAAAGCCctataaatgtaaattttgtgaaaaagctTATGCGGAGAGCGGGGATCTAAATAAGCATAAGCGTACACATGTCGGTGAGAAGACTTACATATGCGATGAGTGTCCAGAGgcttttaaatatcaaatagAATTACGAGAACACCAGCGTCTTCATTACAAAAAGCAAAAGCAGGAGGCTGATGGTGCGAAAATAAATGTTGAGaaacaaaagattttaaaaagcTAA
Protein Sequence: MSNSEQIAEHMCRACMCKHQNFHSIYDEVDKTVKICEMLATTIPQIIIHSNDQLPKLICVPCLNKLNITYQFQQMCIASDKHMRSLLLDLVKNLSCNMGQQTEATQVTTKLECNPIVAEDFLKLQSCMKTEINADEVKELDLEAFLEARATAKSEKILEESGEEWRLADGISSEWSACDDSDYKGEKSTSKIKRAKKELRTSNIYNETGFDEIEKPNKRNRRKSELPCPHCDKVFDRPYRLKRHSGVHLETRPFSCEICNYRFTTVYQLARHKVTHEDVKSVAPLPPLEGYKCPDCPRRFEKRESLAAHIQSHRKTDPGQVFKCDLCPKKFRKFTTLSQHARTHPENQKFKCTLCEKAFGVNAHLIEHMNKHNGLKPFVCDYCNKAFHQNSTLKEHQRVHTGEKPFLCSQCGKSFQNASNMRQHLLRHSGEKRYQCPECPSKFACQSDQIKHMSTHRTVKPHVCDICGSRFTRSYTLNKHKHIHTGERPHKCDECNMTFVFIEHMRRHKRTHTGEKPYKCKFCEKAYAESGDLNKHKRTHVGEKTYICDECPEAFKYQIELREHQRLHYKKQKQEADGAKINVEKQKILKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -