Tpra011040.1
Basic Information
- Insect
- Tricholauxania praeusta
- Gene Symbol
- -
- Assembly
- GCA_949775025.1
- Location
- OX459028.1:190186936-190200905[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.022 2.8 9.8 1.6 3 23 242 262 241 262 0.95 2 16 9.1e-05 0.012 17.3 1.6 3 23 269 289 268 289 0.97 3 16 0.00033 0.043 15.5 2.3 1 23 297 319 297 319 0.98 4 16 1.2e-05 0.0015 20.1 4.7 1 23 327 349 327 349 0.98 5 16 1.5e-06 0.00019 22.9 0.5 2 23 355 376 354 376 0.97 6 16 0.00063 0.082 14.6 2.6 1 23 382 404 382 404 0.98 7 16 0.00023 0.03 16.0 0.9 1 23 409 431 409 431 0.98 8 16 2.9e-06 0.00037 22.0 0.2 2 23 437 459 436 459 0.92 9 16 0.034 4.5 9.2 1.0 3 23 590 610 588 610 0.94 10 16 4.7e-05 0.0061 18.2 1.3 3 23 617 637 616 637 0.98 11 16 0.00033 0.043 15.5 2.3 1 23 645 667 645 667 0.98 12 16 2e-05 0.0026 19.4 2.6 1 23 675 697 675 697 0.98 13 16 1.6e-07 2.1e-05 25.9 0.8 2 23 703 724 702 724 0.97 14 16 0.001 0.13 14.0 1.6 1 23 730 752 730 752 0.98 15 16 0.5 65 5.5 0.7 1 23 757 779 757 779 0.86 16 16 0.00011 0.015 17.0 0.8 2 23 785 807 784 807 0.93
Sequence Information
- Coding Sequence
- atgaaTCTCGTAAGCGATAAGCCTAATAAATGTAGAGCGTGTCTAGTGGAAAATCCATCACAATTATTTTGTTGGACTGCACCACTTGAAACTGCCATCTATGAAACCATAACGTACTtggaatgttttcaaaaatgtactcgATTGGATGTGTACACAGATGATCAGCTACCACAGTCACTATGTTTTCAATGTGCAGCCGAGCTGCGCGATGCGTACGAATTCATCAAAAAAGCAACGCATTCGCATCAAACGCTACTGATGAAACAGGAGCTACCATTCTCAAAAGCTGATGAAGAAGGACAAGCAGAAGCAGCAGGCTTTGAATGGGTCGCAGTGCAAAAAACGGATGATGACGAAACAAGGAATACAGATGCTATTGTGCAAACAAACGTTAAGACATCACCTAATAAGTTAATACCCACGACAGAAGAGCTAATTATAAAAGCGGATACAAACATAGTTGATGCTTGTGACTCCGCATCGGATGACAACTTCGACTGCAGTCCTTCATCACCACAGGATGACGACAGTGATGCTAGCTATATACccgaaaaagaaattaaaattaaacccAAAAATGAGACCTCAAAAGCGTCCGATCGCAATGACAAACCTGCTACAAATAGAAAACGTAGAAAACAAAGAATCAGTGATGCGGATAAAACAGAAATAACAGATGAACAGGAAGAAGAAGATCCACAAAGTCAAGCCGATGTTGATTGCGAGTTTTGTAATAAACCTTTTTCGCGAAAGAAAATAAAGCGACATATAAAACGTGTGCACAATGTAAGAATGCTGCTCTGTCATGCATGCcCCCGTACCTTTAAAGATGCCAGCAATTTAACACAGCACTCCCTAACACATGATGAAAACCGACAACGTAATTTCACTTGCGATCAATGTGGTAGGAAGTTTTTCACAAGAACTGCTTTCCTCAATCACGGCAAAACTCATGAAACTAATCGTCAAGCAGAATATCAATGTGAACATTGTGATAAGCAATTTTTCCATAAAGGCAGTTTGAAATTGCATATGCTAATTCATACTGGTGAAACTTTGGAAtgtaaaatttgtgaaaaaagatATCCGCgtaaaattgatttaagaatTCACATGAGAACTCATTCGGGAGATATGCCCTATAAGTGTCGGTATTGTGAGCGAGCATTTACACGAGTTGGTGTTCTTAATAAACACGAGCGGCATCATGAAGGTTTTCGTTACAAGTGCGATATTTGTGAAAAGGAGTATTTGAATCAATCAAGTTTGATAAAACACAGGAAGGAACACACGGGCATGCCTCTGAAGTGTCTGATATGTGGCAAAGGATTTGTCACAAAATCCAaTATGAAACGACACATTGAGGgtgtacataaaattaaaaatccagAAGAAATGGAAGAGTTTATACTTAAGGTTAAGACTAAAAAGGAATATCGAGGTCGTGTGACATCACCTAGTCACAAGTCAATACCCACGACAGAAGAGCTAATTATAAAATCGGATACAAACATAGTTGACGCTTGTGACTCCGCATCGGATGACAACTTCTACAGCAGTCCTACATCACCACAGGATGACGACAGTGATGTTAGCTATatactcgaaaaaaaaattaaaattaaacccAAAAAAGCATCCGATCGCAATGTCAAACCTGCTACAAACAGAAAACGTAGAAAACAAAGGATCAGAGATGTGGATAAAACAGAAATAACAGATGAACAGGAAGAACAAGATCAACAAAGTCAAGCCGAAGTTAATTGCGAGTTTTGTAATAAACCTTATTCgcgaaagaaaataaaaaaacatataagaaGTGTGCACAATGTGAAAACGCTGCTCTGTCATGAATGCcCCCGTACCTTTATAGATGCCAGCACTTTAAAACAGCACTCCCTAACACATGATGAAAACCGACAACGTAATTTCACTTGCGATCAATGTGGTAGGAAGTTTTTCACAAGAACTGCTTTCCTCAATCACGGCAAAACTCATGAAACTAATCGTCAAGCAGAATATCAATGTGAACATTGTGATaagcaatttttctataaagGCAGTTTGAAATTGCATATGGTAATTCATACTGGTGAAACTTTGGAAtgtaaaatttgtgaaaaaagatATCCGCGTAAAAGTGATTTAAGAATTCACATGAGAACTCATTCGGGAGAAATGCCCTATAAGTGTCGGTATTGTGAGCGAGCATTTCCACGAGTTGGTGTTCTTAATAAACACGAGCGGCATCATGAAGGTTTTCGTTACAAGTGCGATATTTGTGAAAAGGAGTATTTGAATCAAACAATTATGATAAAACACAGGAAGGAACACACGGGCATGCTTATGAAGTGTCTGATATGTGGCAAAGGATTTGTCTATAAATTCCaTATGAAACGACACATTGAGGGTgtgcacaaaattaaaaatccagAAGAAATAGAAGAGTTTATACTCAAGGTTAAGACTAAAAAGGAATATCGAGGTCGTGTTGTTTAG
- Protein Sequence
- MNLVSDKPNKCRACLVENPSQLFCWTAPLETAIYETITYLECFQKCTRLDVYTDDQLPQSLCFQCAAELRDAYEFIKKATHSHQTLLMKQELPFSKADEEGQAEAAGFEWVAVQKTDDDETRNTDAIVQTNVKTSPNKLIPTTEELIIKADTNIVDACDSASDDNFDCSPSSPQDDDSDASYIPEKEIKIKPKNETSKASDRNDKPATNRKRRKQRISDADKTEITDEQEEEDPQSQADVDCEFCNKPFSRKKIKRHIKRVHNVRMLLCHACPRTFKDASNLTQHSLTHDENRQRNFTCDQCGRKFFTRTAFLNHGKTHETNRQAEYQCEHCDKQFFHKGSLKLHMLIHTGETLECKICEKRYPRKIDLRIHMRTHSGDMPYKCRYCERAFTRVGVLNKHERHHEGFRYKCDICEKEYLNQSSLIKHRKEHTGMPLKCLICGKGFVTKSNMKRHIEGVHKIKNPEEMEEFILKVKTKKEYRGRVTSPSHKSIPTTEELIIKSDTNIVDACDSASDDNFYSSPTSPQDDDSDVSYILEKKIKIKPKKASDRNVKPATNRKRRKQRIRDVDKTEITDEQEEQDQQSQAEVNCEFCNKPYSRKKIKKHIRSVHNVKTLLCHECPRTFIDASTLKQHSLTHDENRQRNFTCDQCGRKFFTRTAFLNHGKTHETNRQAEYQCEHCDKQFFYKGSLKLHMVIHTGETLECKICEKRYPRKSDLRIHMRTHSGEMPYKCRYCERAFPRVGVLNKHERHHEGFRYKCDICEKEYLNQTIMIKHRKEHTGMLMKCLICGKGFVYKFHMKRHIEGVHKIKNPEEIEEFILKVKTKKEYRGRVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -