Tpra008633.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Tricholauxania praeusta
Gene Symbol
-
Assembly
GCA_949775025.1
Location
OX459028.1:142619703-142626699[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00097 0.13 14.0 1.3 1 23 255 277 255 277 0.95
2 16 0.00018 0.024 16.3 3.3 1 23 283 305 283 305 0.97
3 16 3.6e-06 0.00047 21.7 3.1 1 23 313 335 313 335 0.99
4 16 0.0015 0.19 13.5 1.7 1 23 340 362 340 362 0.99
5 16 1.6e-05 0.002 19.7 3.3 1 23 399 421 399 421 0.98
6 16 0.0024 0.31 12.8 1.2 1 23 427 450 427 450 0.95
7 16 3e-06 0.00039 21.9 0.5 1 23 458 480 458 480 0.98
8 16 3.1e-05 0.004 18.8 2.0 1 23 490 512 490 512 0.98
9 16 0.0031 0.4 12.5 0.8 1 23 518 540 518 540 0.99
10 16 2.2e-05 0.0029 19.2 3.6 2 23 547 568 546 568 0.96
11 16 4.7e-06 0.00062 21.3 1.4 1 23 574 596 574 596 0.96
12 16 0.0011 0.15 13.8 1.1 1 23 602 624 602 624 0.98
13 16 4.9e-06 0.00064 21.3 1.7 1 23 630 652 630 652 0.96
14 16 0.16 20 7.1 6.1 1 23 658 680 658 680 0.98
15 16 2.4e-06 0.00031 22.2 1.9 1 23 686 708 686 708 0.99
16 16 4.5e-05 0.0059 18.2 1.5 1 23 714 736 714 736 0.96

Sequence Information

Coding Sequence
atgagCAATTCACAAGAAATATTGGATATGTGTCGTGCCTGCATGTGTAAAAATCAAATGTTCCACTTACTGTGCGATGAAGCGGCTGATAAACCTTTGACAATTTATGAAATGTTTGCCACAACGATACCTCAAGTGCCCATTCACAGCAATGATGAGCTACCCAAGAAAATTTGTATAACATGCTTAAATACATTGATTATCGTCCATAAATTTCAGCAAATGTGTATCACGTCGGACACATATATGCGCAGTTTTTTGGTCAGCAACAGACTTGCATGTCATAGTATTAGTACCTCTACAGAGCAACAAGAGGAAATCAAGCACATTGTATTAGGCCAAGGAACAGAAAAACTAGATGACCCGCTTGTAACGCAGGATCCACTCAAATCGCCATGCTCAATAAAAGTCGAAGCAATTGATGATACAGTGAGTGAATCTGTCTTATTAGAACCAAATGATGTTTTAAGCAATAATGTCAAGGACTCAGATTGGAGTGACGCAGAGGAGTTTCAAAACTGTATAAAACTTGAAATCAGTGATGTAGAAATGCGAGAATGCAATTTAAATGCAGCTTTAAccacaaaagagaaaaatgaaaCAGTTTTCTTCGAAAGTAAAGATCCGCACAGTGATAATAGCATGGATAAAAATTTGGAATCTGATAATAACACtgatCATCGTGAGGATAACACAGTTACAGGCTCAGAGTGGAGTGCCCCTGATGAAGCgcCCAATTCAAGCTCTCACCGACAATACAAATTTCGTTGCCCACATTGTAACGCAGCCTTTGCCGGTAACTATAAGTTAAAGCAACATTCTTCTCTTCATGATAAGATGCGTCCCTTTGCTTGCGAAATTTGCAATTATCGCTTTAAAACTTCTACAACATTGGCGCAACACAAGCACACACATAAAATTACTCCACCTGGTGGCTTTAAATGTTCAAAGTGTCCAAGACGCTTTGAAAAACGTAATTCATTGATGTCGCACATGAGAACTCATCGCGAACATCTTTTCAAATGTAATTGGTGCTcacaaaaattcgaaaaactaaCAAGGCTGACACTGCATTTGCGCATACATAAAAGTGAGAATTTTGTGAGTGGCAATGAAAATGATAACACGGATACAGATTTTGAATGGAGTATCGGTGATGACAaACCCAATGCGCAATTTCTTCGCAAATACAATTTTCGCTGCGAACATTGTGATGCTGCTTTCTCAAGTAATTACAAGTTGCAGCATCATGCTCGTGTTCATCTTGAGACCAATCCATTTGTTTGTGAAATTTGCAACTGTCGATTTAAAAAGGTGTCCACATTGGCACTCCACACTGCAGTCAGACATGAAACAGCACCACCCGAAGGCTATAAGTGCCCAGAGTGTCCAAGACGATTTGAAAAAAGAGTATCATTGAGAAGACACGCGATAACCCATCGAAAAACTATGCCAGAACTATTCTtatttaagtgtaatttttgcccgaaaaaatttcaaaaatcatcaGCATTAACGCAGCATGCGCGCTTGCATCCGGAAAATCAGAAATATAAATGTACCTTATGTGAGGCGTCATTTGGATTGGGCTCACAACTTGAAGATCACATGCATAAGCACAATGatttaaaatcattaatttgTGAGCATTGTAAAAAAGAGTTCAAAAAAAAGGCATCACTTAAAGATCATCTACGCAAGCATACTGGTGAGAGACCATACCTTTGTCCACAATGCGGTAAATCTTTTCGAACAACCACAGGTTTGAGGGATCACCGAAAGCGTCATTCTGATGTAAAAAATTATCAGTGCCCAGAATGTCCTAGAAAATTTGCCTGTCGCTCTGATCAATTAAAACATATGGAAGTACATCGAGATGTTAGGCCGCATTCCTGTGATATTTGCGGTTCAAGCTTTACGCGCGCCTCTTCTTTAAAAAAGCATAAGCTCATACACACCGGCGAACGTCCTCACAAATGCAATGAATGCAACATGAAGTTTGCTTGCATCTACAAATTGAGACTTCATCAGCGTTCACATACTGGTGATAAGCCGTATAAATGTAAACATTGCCAAAAAGCTTACGCTCTTAAGGGTGATCTAAATAAACATATACGTGTACATGTCGGTGATAAGATATATATGTGTGAAGAGTGTCCAGAAAAGTTTAAATACCAAAAGGAATTCCGCAAACACCAATCAGCTCATTACAAGCAGAAAAGTGAACCTTTGGACGCTACGATAAGCAATGAAATAGAGCGAGTTTAA
Protein Sequence
MSNSQEILDMCRACMCKNQMFHLLCDEAADKPLTIYEMFATTIPQVPIHSNDELPKKICITCLNTLIIVHKFQQMCITSDTYMRSFLVSNRLACHSISTSTEQQEEIKHIVLGQGTEKLDDPLVTQDPLKSPCSIKVEAIDDTVSESVLLEPNDVLSNNVKDSDWSDAEEFQNCIKLEISDVEMRECNLNAALTTKEKNETVFFESKDPHSDNSMDKNLESDNNTDHREDNTVTGSEWSAPDEAPNSSSHRQYKFRCPHCNAAFAGNYKLKQHSSLHDKMRPFACEICNYRFKTSTTLAQHKHTHKITPPGGFKCSKCPRRFEKRNSLMSHMRTHREHLFKCNWCSQKFEKLTRLTLHLRIHKSENFVSGNENDNTDTDFEWSIGDDKPNAQFLRKYNFRCEHCDAAFSSNYKLQHHARVHLETNPFVCEICNCRFKKVSTLALHTAVRHETAPPEGYKCPECPRRFEKRVSLRRHAITHRKTMPELFLFKCNFCPKKFQKSSALTQHARLHPENQKYKCTLCEASFGLGSQLEDHMHKHNDLKSLICEHCKKEFKKKASLKDHLRKHTGERPYLCPQCGKSFRTTTGLRDHRKRHSDVKNYQCPECPRKFACRSDQLKHMEVHRDVRPHSCDICGSSFTRASSLKKHKLIHTGERPHKCNECNMKFACIYKLRLHQRSHTGDKPYKCKHCQKAYALKGDLNKHIRVHVGDKIYMCEECPEKFKYQKEFRKHQSAHYKQKSEPLDATISNEIERV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-