Tpra007882.1
Basic Information
- Insect
- Tricholauxania praeusta
- Gene Symbol
- -
- Assembly
- GCA_949775025.1
- Location
- OX459028.1:130515022-130516409[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-10 3.2e-07 31.2 0.1 3 38 14 48 13 53 0.95 2 2 8.6 1.6e+04 -3.0 0.0 24 32 348 356 348 356 0.83
Sequence Information
- Coding Sequence
- atgtCAGCTGAGCGTTTCTCCTTTGGAAAGACGCCATCAACGGCAATGAAAAATGCTGTGGAAATGGTTATTAAAGGAGTCTCTTTACGAAAAGCAGCTGACAAAAACGGAGTTGCACACCAAACGCTTGCGCGCTACGTTAGAAGTTTCAAAGAATCTTCGTCCGCCAAAATGAGCCCAAATTATTCTGTCAACGCTATTTTTACTGCCGCGGAAGAACAAGCGCTTGTGACACACATAAAAAACTGCTCCTCCATGTTCTACGGATTATCTTTAGAGAATGTAAGAAGGCTGGCGTATCAAACAGCcactattaatttcaaaaaagttccaaaatatTGGATAGAACATGAAGCTGCGAGTAAAGACTGGTTGAAGCGATTCCGCAAAAGAAACCCATCTCTGTCATTAAAGCCAACAGAAGTTGATAGTCTGTATAGGGTAAAGTCTTTGAACCGGCATAACATCGATCGTTTTTATGATGACCTAAGCACTGTCCTCTCGCGGTCACCTTCCTGCTTTGCTTCTGGAAGCCGGATTTACAATCTGGATGAAACCGGGTTAACAACTGAAAAAATCCTGCCAGCGGTTTACAAAGCTATGAGCTCAAAAAAAGGTTCGTTAGTAACCCTTTGTTGTATCATAAGCGCAATCGGGCAATTCATTCCACCAGCGATGATTTTTCAAAGGGTTCATTTTGAAGATCACATGCTGATTGGTGCACCACTAGGTACACTTGGTTTGGTAAATCCAACTGGCTGGATGAAtgcaaaatgtttcttaaaagtAATAGAGCATTTTGTAAGATTTACTTCAAGTTCTAAAGAAAATCCAACCCTGTTGTTAATGGATAACCGCGAAAGCCATATAAACATTGCTGCTCTCAACTATGCAAAAGAGCACGGAGTTATAATGATGGCCTTCCCCCCGCATTCGTCAAATAAAATGCAACCACTTGATGTGTCCGTCTATAAGCATTTTAAAAGCGCTTATAACCAAGCAATTGATGACTTTATAGTGGATAATCCGAGTAAAACGTTTTCTATATACGACATAGCTAAAGCAACCGGATATGCTTTTGATAGGTCGATGATACCAACGAACATAACATTAGGTTTTCGTAACGCTGGAATTTATCCACCAGACGGAAATGCATTTGACGATTTGGATTTTATGACCAGCAATGTAACCGACGGACCCCTAAGCAACAAAATTGAAGAATTCAACTCAAATGGTCAATTTGTTAACCAATCTGGAACCCTTACTATTTATCAAACACATATGATACAAAAAAACCTTATAAAAACAGAAAGAGAGGAAAACTAA
- Protein Sequence
- MSAERFSFGKTPSTAMKNAVEMVIKGVSLRKAADKNGVAHQTLARYVRSFKESSSAKMSPNYSVNAIFTAAEEQALVTHIKNCSSMFYGLSLENVRRLAYQTATINFKKVPKYWIEHEAASKDWLKRFRKRNPSLSLKPTEVDSLYRVKSLNRHNIDRFYDDLSTVLSRSPSCFASGSRIYNLDETGLTTEKILPAVYKAMSSKKGSLVTLCCIISAIGQFIPPAMIFQRVHFEDHMLIGAPLGTLGLVNPTGWMNAKCFLKVIEHFVRFTSSSKENPTLLLMDNRESHINIAALNYAKEHGVIMMAFPPHSSNKMQPLDVSVYKHFKSAYNQAIDDFIVDNPSKTFSIYDIAKATGYAFDRSMIPTNITLGFRNAGIYPPDGNAFDDLDFMTSNVTDGPLSNKIEEFNSNGQFVNQSGTLTIYQTHMIQKNLIKTEREEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972117;
- 90% Identity
- -
- 80% Identity
- -