Tpra000820.1
Basic Information
- Insect
- Tricholauxania praeusta
- Gene Symbol
- br
- Assembly
- GCA_949775025.1
- Location
- OX459028.1:15438825-15441878[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.7e-15 3.2e-12 47.2 0.0 2 44 354 396 353 397 0.96 2 3 0.013 24 6.0 0.0 25 37 424 436 405 442 0.80 3 3 1.2e-17 2.3e-14 54.1 0.0 3 42 464 503 462 506 0.93
Sequence Information
- Coding Sequence
- ATGAATCATCTTAAATGGATGGGACACCAATCAACCATCTATGAAATACAGAAAAATCTTCGCAACGATTCGCAAAGTTGTGAAGTGACACTGGCAGGTAAAGGCAAGTCGGTGCGAGCTCATCGCTTTGTCTTGTCCTCTTGCAGTGATATGCTGCGCGGTATCCTCGCAGAGATACCCATCGGACAAGAGGCCACCATTATGGTGCCAGACATCAAGGGAGCGCTTTTAGAAAGCGTTCTTGCTTTCATTTACATGGGTGAGACATGTCTAAATTCCAATAATTTGTCCGAATTTTTGGAAGCCATCAATCATTTGGGAATTAAATCTGCTATCAGTTTTGAATGTAATACTGGGATGCTGACAAACAGTGGAACTGGTAATGCAAACAGTGGTGATTGTTCATCGTCAAAAGGAATTTCGAGCGCAATGCAAATAAATCAAGATGAAATTATTGAGGAGGAGCAAATGGCATCGCCCAAAATGGAGgAACAAACTGTTATGGACAGCTCTGATCAACAGGCAGCAAGTGAATTAGAATTTCTTGATGTTTACAATGAGCCACAACAAAAAATCACTTACTCCATTGAGCATATGGCCGCTGCAActacaaatgaatttattttaacagaGAACTCTGGCACTTTCACACTTacacaaaatacaaaattgGACGATCCCAGTATGACAGAAAAAATAGAAGTTGAACCCGAAGAAGATGTTGATGATAGTCACATTCTGGAAGAATATAGTAATACCGCTGAACCTATAATTGAAATAAGCACGGCAAACAACAACTCAACTATCGCCGCCACAACTGGAAATGTTGTTAGCGTCGCCAAGCCAACTCTTATCCacttaaaaccaaaaataaaaattgagcgACGCACATCATCtcatcatcaacagcagcaacatcaccagcagcagcaacaacagcaaacaatGAATACCAACACAGTCGTCGATACGACAGCAACGTCATCAATGGCTAGCATGTTGAACACCTCCACTGATAGCTATTCATCCGGCGGTGGCTTTAATGACAGTCAATTGCGTGATGAaaaccttgaaatggctgtgCAAGGTGTCCTCAACGAGGGAATGAGCCTGCAGAAGGCCGCCCAAAAATATcacatttcaaaaacagtaCTTTGGAGACGTGTGCGCAAGCATCCCATGTATATGAAAACAACACGTGAGAACCCACTATTGGAGGCTGCTTGTAATCGTCTCAGAAGTGGTCAATCGCTTAAGGTCATTAGTCAGGCGCTAGACATACCAATGTCAACATTGCATCGTCATAAGGTGCGCTTGGCTCAACAAGGACGCCTGCCGGATTATATTTCCTTTAAGAAGCGTGGATCCTTTTCAAAGGAGCAACTTAAAGAAAAGCTTTCGAAAGCAGTTCAAGCCTGTCTTCATGAAGGCATGTCGCAGAATCACGCTGCTAATttgtacgaaattccaaaaaGTACGCTATGGCGGCATCTTCAAAAACGTATGAGCGAAGCACAATTGCAATGTCTAGATGATGAAGAGGCCATTAAAGAGGAAATTATTTTATCCTAG
- Protein Sequence
- MNHLKWMGHQSTIYEIQKNLRNDSQSCEVTLAGKGKSVRAHRFVLSSCSDMLRGILAEIPIGQEATIMVPDIKGALLESVLAFIYMGETCLNSNNLSEFLEAINHLGIKSAISFECNTGMLTNSGTGNANSGDCSSSKGISSAMQINQDEIIEEEQMASPKMEEQTVMDSSDQQAASELEFLDVYNEPQQKITYSIEHMAAATTNEFILTENSGTFTLTQNTKLDDPSMTEKIEVEPEEDVDDSHILEEYSNTAEPIIEISTANNNSTIAATTGNVVSVAKPTLIHLKPKIKIERRTSSHHQQQQHHQQQQQQQTMNTNTVVDTTATSSMASMLNTSTDSYSSGGGFNDSQLRDENLEMAVQGVLNEGMSLQKAAQKYHISKTVLWRRVRKHPMYMKTTRENPLLEAACNRLRSGQSLKVISQALDIPMSTLHRHKVRLAQQGRLPDYISFKKRGSFSKEQLKEKLSKAVQACLHEGMSQNHAANLYEIPKSTLWRHLQKRMSEAQLQCLDDEEAIKEEIILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258134;
- 90% Identity
- iTF_00972372;
- 80% Identity
- iTF_01486421;