Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: Rreb1
Assembly: GCA_000599845.3
Location: NW:980173-994400[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.8 29 4.9 0.4 1 23 110 134 110 134 0.91

2 12 0.022 0.35 10.9 0.3 2 23 140 162 139 162 0.94

3 12 1.8 29 4.9 0.8 1 19 228 246 228 248 0.84

4 12 0.16 2.6 8.2 0.2 1 23 366 388 366 388 0.97

5 12 0.13 2.1 8.5 0.8 1 23 397 419 397 419 0.98

6 12 0.0038 0.062 13.3 2.8 1 23 425 448 425 448 0.97

7 12 0.0014 0.023 14.6 3.0 1 23 806 829 806 829 0.97

8 12 0.002 0.033 14.1 0.2 3 23 1089 1109 1088 1109 0.99

9 12 0.35 5.7 7.1 5.2 1 23 1115 1138 1115 1138 0.96

10 12 0.042 0.69 10.0 4.2 1 23 1205 1229 1205 1229 0.97

11 12 0.034 0.56 10.3 0.4 2 23 1481 1502 1480 1502 0.94

12 12 0.012 0.19 11.7 5.5 1 23 1508 1530 1508 1530 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.8	29	4.9	0.4	1	23	110	134	110	134	0.91
2	12	0.022	0.35	10.9	0.3	2	23	140	162	139	162	0.94
3	12	1.8	29	4.9	0.8	1	19	228	246	228	248	0.84
4	12	0.16	2.6	8.2	0.2	1	23	366	388	366	388	0.97
5	12	0.13	2.1	8.5	0.8	1	23	397	419	397	419	0.98
6	12	0.0038	0.062	13.3	2.8	1	23	425	448	425	448	0.97
7	12	0.0014	0.023	14.6	3.0	1	23	806	829	806	829	0.97
8	12	0.002	0.033	14.1	0.2	3	23	1089	1109	1088	1109	0.99
9	12	0.35	5.7	7.1	5.2	1	23	1115	1138	1115	1138	0.96
10	12	0.042	0.69	10.0	4.2	1	23	1205	1229	1205	1229	0.97
11	12	0.034	0.56	10.3	0.4	2	23	1481	1502	1480	1502	0.94
12	12	0.012	0.19	11.7	5.5	1	23	1508	1530	1508	1530	0.98

Sequence Information

Coding Sequence: ATGGCGTTCACGGCGAGCAACGGCCTGAGCGAGCGTCTGCGCGCCGAGCACCACTCGGTCTCGCCGACGTCGCAGCACAGCTGCACCGACTCGGACGggggcggcagcagcgacagcgagCCACAGAGGCCGGCGCACAAGCGACGCATCGTCCACGACGagtacaacaacaacgaggtGACCAAGCGCCAGTGCATCGAGACCGACCGCAACGAtcctcgctcgctgctgctcgccgaTAAAAAGAGTCAggaggaggagcagcagcagcagagcagccaACAGCCTCGATCggccaagcagcagcatcaatcGGACTCGGGTCCGCACACGTGCGACATCTGCGGCCAGCAGGACTTTCCCACCTACAAACTGCTCGACGCGCATCTCGAGCAGAGTCATCCGGACGATCCGATCAGTTGCCCGGAGTGCGATGTCGCCTTCAAGAACTATCGCACCTACAGCGTACACAGGTACATGTCGCACTCGAGCtccacaacgacgacgacgccgacgccgacgacgaggcaGAGCAGCGCCGAGTACAATCACAACAGCGTCGTGGGCTTCTCCGACCTGACCTACGTGGACTTTACGAGCGACAAGTTCCCGTCGATAGCGCGGGCCGCCTGCGAGCGAGCCCGACACAGGCCGTCCTCGAGCGACGAGGCCCACCTCAGCTTCCAGTGCGACAAGTGCCAGCGCGCCTTCCCCTGCCGCTCGGCCGTCGAGGCGCACGAGTTCGACTGCGGCCGGAGATCGCCGCCCTTCGAGCCCGAGCACTCGCGGCGCAACGACTTCTTCGCCGGCCTCGATCTGCAGAacaagtcgtcgtcgagcgaggTCAAGGACAGTCGCGATCTCGCCGACATACAGAGCATCATCTCGGTGACCTCGGGCCCGATTCTCCAGGGTTTCGGCGCCGGTCACCACGGCGAGTTCGATCACGGCCGGCGACGCTCGGCTCACCTGCCCACCGAGATGATGTCGATGagctcggagcagcagcagcagctgcaggaTCAGCACCcccaggaggaggaggcgcaGGACGCGTTCGCCGCCGAGTTCCGGCGCATGAAGCTCAAGGGCGAGTTTCCCTGTCGGCTCTGCAGCGCCGTCTTTCCGAATCTGCGCGCCCTCAAGGGCCACAATCGGCAGCACATGAACGTGTCGGCCGGCCAGTCCTATCCGTGCAACATGTGCTCGTACAGCCACCCGGACAAGGCCACGGTGATCAGGCATCTGCGCTCGCACAACGGCGACCGGCCCTACGAGTGCTCGCTCTGCAACTACGCCTTCACCACAAAGGCCAACTGCGAGCGGCACGTGCGCAACCGGCACGGCAAGGTGACCCGCGACGAGATCAAGCGGGCCCTCATCTACCATCCGAACGAGGACGCGACCAACGACAGCAGCCTCGAGCAGAGCTCGCCCCGCAGCGGCTCGCTGCGCGCCGACGACGTGCGCAAGTCTCACATCTACCTACCCGGCGCGGAGAAGCGGCCGGAGATCCACGCCGACAACATCCTCTCCTCGCTCAGAGTCAAGGACGTGGAGGCTGTGGTGAAGGCTCAACGAGCCGTCGACGAGTTCGAGGAGCCGCTGCGCAAGCGACACTCGGACGAGGCAGACTCCCATTCCTCGGACGGCGACGCCGCGGTCGTTCGTTCGGCGGCCAGTCAGGAGGCGCTGATGGATCGCAAGAAAGACAGTCCCATTCATCGCTACTCGAGACTCGACGAGATTCCCTTGGATCTGTCGATGGACGTGCTGGACCTCAGCAAAAAGGCAAAGGCCGCGGCGGCCGCCAAAGCCGTCGACGCGATCGCGATCGGGCAAGACGCCCGGACGAGCAAGAACGGCCTGGAAAATTCGAGCAACGAGCCCAAGGACGTCTACAGCGGTAGCCAGGACCACTTGCTGCTGACTCAAGCGCTTCTCAAAGCCACCAACATGGGAGCTCCCCCCTCGTCGCTCGAGTCCCTCTACGCCAATGCCCAGATGATCTATCGCAACTTGCCCGGTTTCCCGCTGCCGTTCAACATGTTCCCGTTCTTCGCCCAGGATCTCAGTACCAAAGACAAGCCACAGAAGGAGCTGGTGCGCGGCCTACAGACCAGCGGGGGCAGCCTCGTCGAGCCGTCGAGCAACAGTCCCGTCGTCGGACACTCCCTCGGCCACTCGCCCAATCCGATCAACTCCGAGCACAACGACTACGTGGCGCTCATCAATCAGAAGCTCATGAACaagagcggcagcagcagcggtggcggcggtggtagcagcagtggcatGCACGGCAGGGCCGACAAGATCGAGACCTCGCCGTCGTCCAACTCGGTCAAGATGGTCATCAAGAACGGCGTGCTGATGCCCAAGCAGAAGCAGCGCCGCTACAGGACCGAGCGGCCCTTCACCTGCGAGCACTGCTCGGCCAGGTTCACCCTCAGGAGCAACATGGAGCGCCACatcaagcagcagcatccgcaGCACTGGAGCCAGCGGCCGCGAGGCGGACACTCGAATCGCGGCCGACCACCGGCCAATCCGCCCACGCTGCTTCAGAGCCTCAGGCACTCGCATCTGCCGTCGAGCTATCCGACCCTGCTGCCCAAACTGAGCCAGAGCTACAATTACGAGAAGCACGAGATCTCCGACCAAGTCAAGTACGCCATTCTCACTCAACACCTCAAGTCCAACAAGTCGCTCGAGCACGAATCCGACGAGGATCTCGTTATCGACGAAGAGAGCGTCAAGGAAGAGAAGGAAGGTAACAAATCAAAAGACAAAACTCTGAGCTTGCTGAGAGACAAGTTGGAGTCCGGTATCGTAAATCAGAGTCACGAGGCCGACGGCCTCAAAGTAGAAATAGATACGAAACAGGAGCTGGCCTCGCCGGAAAGCGATagtaaattatacaaaaaacgTGCCAACACGATCGAAGACGAGCTCGATCAGTCGAGGATCGGCGAGaagacgagcgagcgcgggGGCGTCAAGGCGGAGAAGCAGGAGTCCGAGGATCTGGCCAGCGTCTCGGAGATTCTCGACAACGCCTCGCAGAGGTACCAGCAGTTTCAGCCGCAGTACATCAGCGACGAGGAGGGCCTCGTGGCCTCGACGAGCGACTGCAGCGACGACAAGTCCGACTCGTTCAATTCGGGCTCGGGCTCCTCCTCCGGccgcaagaagaagaagaagctgaagaagaagaagaaggccAAGTCGTCGGCCTACTCGCTGGCCCCGAACCGGGTCCTGTGCCCGTACTGCCAGCGAGCCTTCCCCTGGACCTCGTCGCTGAGGCGTCACATCCTCACGCACACCGGTCAGAAGCCCTTCCAGTGCACCTACTGCTCGCTCCTCTTCACCACCAAGTCCAACTGCGATCGCCATCTGTTGAGGAAGCACAAGAATTGCCTGAATCTGAATCTGATCCGTAATCGGGCGCGCAGCACCTCGTCGCCGGAGGTGCAGGAAGCGGCAAAAGATAGTATTATTAatcaaacgacgacgacgacgagcaacaCTACGACGGCTGCTAACGTCGCCTCGAGCATCTCGGCGTCGCACGGGGCTCTGGCCCTGCGCAACGTTCCCGAGCGCCCCTACAAGTGTCACCAGTGCCCGAGCTCGACGTTTTCCACCCTGGGCAATCTGAAGAAGCACCGCACGACCAAGCATCCCCTCGCGGATAATCAATCGTACACCAAAGCTAACGAGTCAAATAAACTTGATAAACCAAATAAAGCCGAAGACGGCGAAGAGATGGCGAGGGCCGAGGAGGAGGAAGTGGACAAGGTACGATCGTACAGCGTCGAGTCCGACGCGAGCCTTCGAGATAGCCCTCAGCCGTTCGATTATCAGACGGCCGGCCTGGCCGAGTATTCGAGCGCCAAGAGGGACTTCCGGGAGAGCCAAATGAAAGCGAGCAACGACCAGAGCGACTACGACAGCCAATCGTCCGGCGTGTCGGACCACATGGAATCTTCCGGCTCCGTCAAAGCGGCCACGAGTTCCAAGACCTTGatgatgagcagcagcagcagcagtgccaacaacaacaacaataacaacaacagcagcagcaacaacaacaacaataacgcGACGTCGCCCTCGAACAACGACGCGGCGTCCCGCTCGAGACGACAGTCGCCGCATTTGTCGCCGGGCATGGTGAACAGCGACACACCCTTCAAGTGTCACCTGTGCGACTGCGGCTTTCCCGAGCGGCAGGACTGCCTCGATCACATCAGGGACAATCACGAGAAGTCGTACGAGGTGCTGGTCGCCAAGGGCGCCCTCGACATGGAGATCGACGGCGTGGACGAGCTCATGCCGCAACAGCTGGTggctcaacagcagcaagccTCCAACGCCAGCGACGGCGAGGACAAGAAGGGCCGCTTCCCTGACTACAGCAACAGAAAGGTGGTATGCGCCTTTTGCATGCGTCGCTTCTGGTCGGCGGAGGATCTCAGGCGCCACATGCGCACTCACACCGGCGAGCGGCCCTTCTCCTGCGACATCTGCTCGCGGCGCTTCACCCTCAAGCACAGCATGCTGCGCCACCGCAAGAAGCACGAGTCCGTCGACTCGAGCATGTACGTGGGCACGAGCGGCGACGAGGACTACTCCATCaatcagcatcatcatcatcatcatcatcatcatcagctgGCACCCGTGACGACGAGTGGCATGCGCACATCACTGCCCCAGGTCGCCGCCGTGGCCACGGCGGACGCCGCCCCAACTAGTCTTACGCACTTCAGCCCCTACGAGAAATTGTCGGCCCTGCAGGGCAAGCTGATGGCCGGCAGCCAGCATCAACAGGCGAGCAGCCTCGACtccaacgacaacaacgacaacgattTGATTTCCAATCTTCTAGGCATTAAGGGACACATGGTCGACGAGGTGCTGCAAGCTTCGGCCGACGACGCGGCCAAATTACTCGGAGTCAAGGGAAATCAGGAGTAA
Protein Sequence: MAFTASNGLSERLRAEHHSVSPTSQHSCTDSDGGGSSDSEPQRPAHKRRIVHDEYNNNEVTKRQCIETDRNDPRSLLLADKKSQEEEQQQQSSQQPRSAKQQHQSDSGPHTCDICGQQDFPTYKLLDAHLEQSHPDDPISCPECDVAFKNYRTYSVHRYMSHSSSTTTTTPTPTTRQSSAEYNHNSVVGFSDLTYVDFTSDKFPSIARAACERARHRPSSSDEAHLSFQCDKCQRAFPCRSAVEAHEFDCGRRSPPFEPEHSRRNDFFAGLDLQNKSSSSEVKDSRDLADIQSIISVTSGPILQGFGAGHHGEFDHGRRRSAHLPTEMMSMSSEQQQQLQDQHPQEEEAQDAFAAEFRRMKLKGEFPCRLCSAVFPNLRALKGHNRQHMNVSAGQSYPCNMCSYSHPDKATVIRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKVTRDEIKRALIYHPNEDATNDSSLEQSSPRSGSLRADDVRKSHIYLPGAEKRPEIHADNILSSLRVKDVEAVVKAQRAVDEFEEPLRKRHSDEADSHSSDGDAAVVRSAASQEALMDRKKDSPIHRYSRLDEIPLDLSMDVLDLSKKAKAAAAAKAVDAIAIGQDARTSKNGLENSSNEPKDVYSGSQDHLLLTQALLKATNMGAPPSSLESLYANAQMIYRNLPGFPLPFNMFPFFAQDLSTKDKPQKELVRGLQTSGGSLVEPSSNSPVVGHSLGHSPNPINSEHNDYVALINQKLMNKSGSSSGGGGGSSSGMHGRADKIETSPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSNRGRPPANPPTLLQSLRHSHLPSSYPTLLPKLSQSYNYEKHEISDQVKYAILTQHLKSNKSLEHESDEDLVIDEESVKEEKEGNKSKDKTLSLLRDKLESGIVNQSHEADGLKVEIDTKQELASPESDSKLYKKRANTIEDELDQSRIGEKTSERGGVKAEKQESEDLASVSEILDNASQRYQQFQPQYISDEEGLVASTSDCSDDKSDSFNSGSGSSSGRKKKKKLKKKKKAKSSAYSLAPNRVLCPYCQRAFPWTSSLRRHILTHTGQKPFQCTYCSLLFTTKSNCDRHLLRKHKNCLNLNLIRNRARSTSSPEVQEAAKDSIINQTTTTTSNTTTAANVASSISASHGALALRNVPERPYKCHQCPSSTFSTLGNLKKHRTTKHPLADNQSYTKANESNKLDKPNKAEDGEEMARAEEEEVDKVRSYSVESDASLRDSPQPFDYQTAGLAEYSSAKRDFRESQMKASNDQSDYDSQSSGVSDHMESSGSVKAATSSKTLMMSSSSSSANNNNNNNNSSSNNNNNNATSPSNNDAASRSRRQSPHLSPGMVNSDTPFKCHLCDCGFPERQDCLDHIRDNHEKSYEVLVAKGALDMEIDGVDELMPQQLVAQQQQASNASDGEDKKGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICSRRFTLKHSMLRHRKKHESVDSSMYVGTSGDEDYSINQHHHHHHHHHQLAPVTTSGMRTSLPQVAAVATADAAPTSLTHFSPYEKLSALQGKLMAGSQHQQASSLDSNDNNDNDLISNLLGIKGHMVDEVLQASADDAAKLLGVKGNQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01483319;
90% Identity: iTF_01483319; iTF_01481952; iTF_01484208;
80% Identity: -