Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:239517-280244[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.09 1.5 9.0 1.2 1 23 368 391 368 391 0.94

2 15 9.7 1.6e+02 2.6 3.3 2 23 561 583 561 583 0.96

3 15 2.2 35 4.6 6.9 2 23 607 629 606 629 0.96

4 15 0.11 1.9 8.6 2.0 2 23 677 699 677 699 0.95

5 15 7.4 1.2e+02 2.9 1.7 1 23 735 758 735 758 0.91

6 15 0.06 0.98 9.5 3.2 1 23 773 796 773 796 0.96

7 15 4.9 80 3.5 3.5 1 23 806 829 806 829 0.95

8 15 0.77 13 6.0 1.8 1 23 878 901 878 901 0.96

9 15 0.055 0.9 9.6 2.0 1 23 917 940 917 940 0.95

10 15 8.9e-05 0.0014 18.4 1.6 1 23 946 969 946 969 0.95

11 15 0.013 0.2 11.7 1.0 3 23 976 997 974 997 0.93

12 15 0.0049 0.079 13.0 0.4 1 23 1002 1025 1002 1025 0.97

13 15 4e-07 6.5e-06 25.8 1.8 2 23 1032 1053 1031 1053 0.97

14 15 8.7e-05 0.0014 18.5 0.5 1 23 1059 1081 1059 1081 0.98

15 15 6.9e-06 0.00011 21.9 1.4 1 23 1087 1109 1087 1109 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.09	1.5	9.0	1.2	1	23	368	391	368	391	0.94
2	15	9.7	1.6e+02	2.6	3.3	2	23	561	583	561	583	0.96
3	15	2.2	35	4.6	6.9	2	23	607	629	606	629	0.96
4	15	0.11	1.9	8.6	2.0	2	23	677	699	677	699	0.95
5	15	7.4	1.2e+02	2.9	1.7	1	23	735	758	735	758	0.91
6	15	0.06	0.98	9.5	3.2	1	23	773	796	773	796	0.96
7	15	4.9	80	3.5	3.5	1	23	806	829	806	829	0.95
8	15	0.77	13	6.0	1.8	1	23	878	901	878	901	0.96
9	15	0.055	0.9	9.6	2.0	1	23	917	940	917	940	0.95
10	15	8.9e-05	0.0014	18.4	1.6	1	23	946	969	946	969	0.95
11	15	0.013	0.2	11.7	1.0	3	23	976	997	974	997	0.93
12	15	0.0049	0.079	13.0	0.4	1	23	1002	1025	1002	1025	0.97
13	15	4e-07	6.5e-06	25.8	1.8	2	23	1032	1053	1031	1053	0.97
14	15	8.7e-05	0.0014	18.5	0.5	1	23	1059	1081	1059	1081	0.98
15	15	6.9e-06	0.00011	21.9	1.4	1	23	1087	1109	1087	1109	0.98

Sequence Information

Coding Sequence: ATGTCGGAAGCGtccgcgacgacgagcaacGCCGTCGCCGACTCGGGTCTGCACGAACAACAGGCGATAGGCGCTGACGACGATGCCGTCAACGCGTCCACGTCCATCGACTATCTCGACCTATGCAGATTATGTCTGCAGAAGGACGCCGTCAACGTGCCCATATTCGAGGACGACGGCGACTCGAGGCAGATCTTCCTCAAGATCACCGCCACTTTGCCGGTCAAGATTTTCAAGGAAGATAAACTgccgaaaaaaatttgtgatgATTGTTTATATAAAGTAGAACTACTTTATCAATTTTGGAACCAGGCTGCAACTTCAGAAAAACAATTGTTGCAATGGCTAGGAGAAGTTGGTCTTGACGACAAACAAAATTATGAAGTCCTCGAAGAGgattTAATGAAACAAGATAAAGGCAACGACAATAGACTGAATACTAATATTATTCAAGTTTCTGATCAAAATAGTATAGAAATCAGTATGATAGACAATATATCACTCATAACAATACCAGCTGGAAGTGAACAGTTCACTACAGTTCCTATTGACGCCAGTGGTACTATTCAAACGGAGGCAATGCAAAGCTCCCATGACCAAAGTCAAATTGAAGAAGATAGGAGTGAAATGGGAGATATGTCAGATGATGGATGTGATAATGAAGGTTTACCTGTGAAAGAAGAGTCTGATGATCAAAACAATCAAACAAATATGGATCAAGCGTATGTGTCAATTGAAGCTGGACCATCTGGTCTTCAACATCagaaaatttcagaaatatCTGAACTTACAATACAACAAGCAGCTGATGGTGATCCTAAAACTGGatCGACGCAGCAACAGCGCCAGCAGCCTAACCTAAGCAATTCGGCGCATAAAGTAGCCCCGAAGCTGCATGCTAAACAAATGGCGAAATTCATGCATCCGGAGAGCATCAAGATCGAGCGAGTCGAGTCTCTGGCGCCACAGACCAAGTCCACGGTCGGCGGAGCCGATTTCGAGGAAGTTTATATCGACGGATCGGACATGATTGCCGAGTCGAACAACAAAACGACGAATCAACAACAATCGGCAGCTCAGGAAACGAGCGAAGTAGTCGTGTACATGTGCACCCCTTGCCAGACTTACTTCCCGACAAAGGCCCAGCTGGAGGTGCATCACAAGGAGTCGCACGCGACCTCCAAGCCGGCCGTTAAAAAGGTCAAACTGCAGCAGCTTCTCATGCAGCTcaagcaggagcagcagcccAAGCCGAGGCCGCGCTTCGATCAGGAAGAGAACAAAGTATTTTTCCAGCTTTATCATAAAGACTTGAATACCAACGAGTTCGTCTGTAATTTTTGTCCGTATCGATCAGTCATACGAACGACGGTCTCGTCGCACGCCAAGCGAAATCACATGTCAGCGGGTTCTGATaacgaggaggaagaagaatcCTTCGAGATGATTAAAACTAAGCAGGAGCAGGAGGAtgtcgacgaagaagaagaagaagatgaattATACGACGATCCGCTCGTGGATGAGATGAAAATGGAGGTGATGGACGAGGAGATGATCGAGATacacgacgaggacgacgagtcATCGTGGCCCATCGAAACCGTCGACGAGACGTTCGAAGAGCAGATGCAGAATCACGAGCCGGAGGCAGTCTCCGACAGCGAGGACCGGATGCGCACCTGTCCCTACTGTTCGTTCCAATCTACGGTAACCTCGACCTATCACTCGCACGTAAAACGTAAACATCGCGAGGAATGGGCGGCCGAAAACGCAATGAAAGCCGCCATGGCCAAGACTCCCGAGGGCCCCGAGCTCCAGTGTCAACACTGTGACTTCACCACGTACAAGCGCAATACTCTGCACTCGCACGTCAAACGCAAACACGGACTCAAGCGCAAGCTCGACGAGACCGACTTGGACGATGTCGACGACAATTTCGTAGAGGTCAAGGAAGAGTTGCTCAACGAGTCCGAGGCCTCTTTGGCCGACGGCGCTGCCGAGTCCGACGTACTGTCGAAGATACGCTCGTGTCCGTACTGCAACTTTCAGACTCGCAACACGTCGACTTTCAACAGCCACGTGCTGCGCAAACACGGCAGCAACGCCAAGCGAAGCGCGTCCGGCCTCGGTGGAGCCTCGAGTCGCGCCGCCCCCAGCAAGAAGAGCAAGACTGCCTCCAACAGCTTCATGATCACTGGCTACGCGTGCCACTATTGCGCGTTCGTCGCCGCCACGATACACAGCCTCACCAGTCACAACACGCGGATGCACGCGAGCATGAAGCAGCCCGTCCAGGAGATACCGACCGATCAGTTTGACTGCGACCGCTGCGAGTACAAAACGCGCAATCGGCGCAACATGCAAACTCACTTGAAAAAGAACCACAAAGGTCAAGCCAATGCCGATGGCATGTACTGCTGCAACGCCTGCTCCTACGAGACCATGTCGCACATGGGTCTGCAGAGACACATGTCGATCAAGCACCAGAAACCGAATCTCACCAATAACGTGCCCTGCTATCAATGCGAGGTTTGCGAGTTCAAGTGCctgaacataaaaattatggatTGGCATCTCAAATCGCATTGCAGCGATAATCGCACCAAGGCCGAGGAATCGGGAATCATTTTCTTCTGCAACGACTGTGACTTCTCCACCTGGCTAAAGACCCTGTTGTTCTCGCACATACGTCGAAAACACAAGGACGGAGAAGGCAAGGACGAACAGGACGAAGGCGAACCTCTTTTCGTGTGCGAGCAGTGTGATTACTCCACAAAAAATAAGCACGTCATGAAGGTTCACGTTATTCGTAAGCACACGGAGAACTACAGCCACGAGTGCGAAATTTGCGGCAAAAAGTACAAAGTCAAAGCGGACCTGACGAATCACGTCAGGTTTAAGCATCGTGAACAGCCCATTATTTGCGACGTCTGCGGTAAAACTTGCCAGAATAGCAATCTGCTGTATCTGCATCAGAAGTTTGCCCATTACAAGCCGGAATTCGAGTGTCCGATTTGCCATCGGCGCATGGTCAGTCAGGCCAATCTCGACGACCACATACTGAAGCAGCACGAGCAGCGCGAGAACGTCGTCTGCCACGAGTGCGGCAAGCAGTTCACGCGCGCCTCGAGGTTGAAGATTCACATGAGAACGCACACTGGCTTGAAACCGTATTCTTGTCAAATATGCTTGAAGTCTTTTGCACGGAGGAACGGATTGCGGCAGCATCTGCTCATACACACGGGCAAAAAGCCGTACAGCTGCGATTTGTGCGACAAATCCTTCACTCAGAAAACGGGCTTGATAAGCCACAGAAAGAGTCATCCTGGATCTCATCCGCCTTTACCGAGGGTCACTATTGATCACGtactttcaaatttacttGAAGAAAAACAGTAG
Protein Sequence: MSEASATTSNAVADSGLHEQQAIGADDDAVNASTSIDYLDLCRLCLQKDAVNVPIFEDDGDSRQIFLKITATLPVKIFKEDKLPKKICDDCLYKVELLYQFWNQAATSEKQLLQWLGEVGLDDKQNYEVLEEDLMKQDKGNDNRLNTNIIQVSDQNSIEISMIDNISLITIPAGSEQFTTVPIDASGTIQTEAMQSSHDQSQIEEDRSEMGDMSDDGCDNEGLPVKEESDDQNNQTNMDQAYVSIEAGPSGLQHQKISEISELTIQQAADGDPKTGSTQQQRQQPNLSNSAHKVAPKLHAKQMAKFMHPESIKIERVESLAPQTKSTVGGADFEEVYIDGSDMIAESNNKTTNQQQSAAQETSEVVVYMCTPCQTYFPTKAQLEVHHKESHATSKPAVKKVKLQQLLMQLKQEQQPKPRPRFDQEENKVFFQLYHKDLNTNEFVCNFCPYRSVIRTTVSSHAKRNHMSAGSDNEEEEESFEMIKTKQEQEDVDEEEEEDELYDDPLVDEMKMEVMDEEMIEIHDEDDESSWPIETVDETFEEQMQNHEPEAVSDSEDRMRTCPYCSFQSTVTSTYHSHVKRKHREEWAAENAMKAAMAKTPEGPELQCQHCDFTTYKRNTLHSHVKRKHGLKRKLDETDLDDVDDNFVEVKEELLNESEASLADGAAESDVLSKIRSCPYCNFQTRNTSTFNSHVLRKHGSNAKRSASGLGGASSRAAPSKKSKTASNSFMITGYACHYCAFVAATIHSLTSHNTRMHASMKQPVQEIPTDQFDCDRCEYKTRNRRNMQTHLKKNHKGQANADGMYCCNACSYETMSHMGLQRHMSIKHQKPNLTNNVPCYQCEVCEFKCLNIKIMDWHLKSHCSDNRTKAEESGIIFFCNDCDFSTWLKTLLFSHIRRKHKDGEGKDEQDEGEPLFVCEQCDYSTKNKHVMKVHVIRKHTENYSHECEICGKKYKVKADLTNHVRFKHREQPIICDVCGKTCQNSNLLYLHQKFAHYKPEFECPICHRRMVSQANLDDHILKQHEQRENVVCHECGKQFTRASRLKIHMRTHTGLKPYSCQICLKSFARRNGLRQHLLIHTGKKPYSCDLCDKSFTQKTGLISHRKSHPGSHPPLPRVTIDHVLSNLLEEKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -