Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:2011894-2023037[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.85 14 5.9 0.1 2 23 338 360 338 360 0.90

2 8 2.9e-05 0.00047 20.0 0.5 1 23 379 402 379 402 0.97

3 8 4.8e-06 7.8e-05 22.4 0.2 1 23 431 453 431 453 0.98

4 8 0.11 1.8 8.7 4.4 2 23 459 480 458 480 0.96

5 8 0.0053 0.086 12.8 6.0 1 23 486 508 486 508 0.97

6 8 0.00036 0.0059 16.5 3.3 1 23 514 536 514 536 0.97

7 8 7.4e-05 0.0012 18.7 2.7 1 23 542 564 542 564 0.98

8 8 0.0036 0.059 13.4 2.8 1 21 570 590 570 591 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.85	14	5.9	0.1	2	23	338	360	338	360	0.90
2	8	2.9e-05	0.00047	20.0	0.5	1	23	379	402	379	402	0.97
3	8	4.8e-06	7.8e-05	22.4	0.2	1	23	431	453	431	453	0.98
4	8	0.11	1.8	8.7	4.4	2	23	459	480	458	480	0.96
5	8	0.0053	0.086	12.8	6.0	1	23	486	508	486	508	0.97
6	8	0.00036	0.0059	16.5	3.3	1	23	514	536	514	536	0.97
7	8	7.4e-05	0.0012	18.7	2.7	1	23	542	564	542	564	0.98
8	8	0.0036	0.059	13.4	2.8	1	21	570	590	570	591	0.93

Sequence Information

Coding Sequence: ATGGCGGCGATCGAGACCATCGCCATAATCGACCACAATCAGCAGAATaatcagcatcatcatcatcatcacgacggcggcggctcgaCGACGCTGAAGATGTGCGCCCGTCTGCTGGCCTGCCCGCTGTGCTCGCAGCCGGGCTTCAACACGCTGGACTCGCTGCGCGCCGGACTGGTGAGCGTGGCCACCCGCGCCCTCGCCTGTCCCGTCTGCAACGAGATACTCATGGGCATCGACAAGCTCACCATACACCTGTTCGGACACACGATTTACAGTGGTGGCCACAAtcacaacaataacaacaataataataataatggtcaTCATCGAAACAATCATCACAACAACGGTAACGATCATCGAGGATCCAACGGCAACTGCGTCGAGCCGAAAAtcgtcgagctgcagcaggCCACGAGAGGGCCGAGCGGCAGCACGATCTGGATCGAGGGCAACGCAAATGCTGCGGTAGGCAGTGCTGCTTGTTTGGACGACGGTGGCAAATTGCTGAACGGCAACGACGGGGCGAGCATCTTCATACCGATCGAGGAGATTGAAAACTTCCGCTCCAatagcagcaacaacaacaaacagcAGGACCAGCACCATCTGATCGGCAACGATAATCGGACGGTCGTTCTGCAGAACATCGGCGGAGGTGGCAATTTGCTGCCTGTCAACGCGATGTCGGGTGCCGATTTCGCGAACGACAAAATCGGCAAGGAGTCTTACACGCAGACCGACTGGTCGAAGAACTcgaacgagcagcagcagcagccgcagcagttGGAGACGCGGACCGACATGCTCGCCGAGCTCGTGAAAAACGCCCAGATAACCGCGTCCCCCTTTCCCGTCAGCAATTACGagccgacgacgagcgacgGCAACAAcatcgacaacgacgacgacgacaacgacaacgatcGAGTGGTGGTAGAAGTAGCAGCGTCGGCGAAACCGATCGTCACCTCGCAGCGACTGCTGGCCAAGGACGAGCGACCCGAGCGCTGCGACATCTGCGGCTTCGGCTTCCCGGACCTCAAGatcctgctgctgcacaaGCAGATCGCGCATCGGGTGCCGGAGGCCCAGGCCCGCCTCGGGCCCGAGCAGCTGCACATGAAGAACTTCCCGTGCCACCTGTGCAGCAAGGTGTTCACCATCAAGGGCAGCCTCATGGTACACATGAAGGTCGCCCATCCGGGCGTCAATAGGCCCGTCAATCCAGACAGACACGAGATGAAGGAGTCGGAGGGTTGCATATACAAGAAAACCGACAAAGGCTTCGAGTGCCCGAACTGCGGCAAAGTTTTCACCAAGGAGCAAAACATCATCCAGCACATCCAGACGCACGACAGCAAGCAGTGGGAGTGCGACGTGTGCTGCAAGCTCTTCACCACCAAGTACTTTCTCAAGAAGCACAAGCGGCTGCACTCGGGCGAGATGCCGTACAAGTGCGGCCTCTGCGACAAGACCTTCACGTTCCAGCAGTCCTATCACAAGCACAAGCTCTATCACAAGGACGAGAAGCCGCACGAGTGCAAGACCTGCGGCCGGGCCTTCAAGGAGCTCTCGACCCTGCACAATCACGAGAGGATACACACGGGCGAGAAGCCGTTCGAGTGCGAGTCCTGCGGTAAATGCTTCAGGCAGAGGGTCTCGTACTTGGTGCACAGGAGGATACACACGGGTGTCATGCCTTACGAGTGCACGATTTGTGGCAAAAAGTTCAGATACAAGGTCAGCCAACGCACGCACAAGTGCGTACCTTCGAGCAACAGCACAGCCACCGCCAGTGGCAGTAGCAATGCCGATTCCtcggctcgagctgctgcgacGGCGACGTTTCAATCGGAAGGCGACAACGCGACCGTCTATCCAGACGTCAATcccaacaacaacagcaacagcagcagtggcagcaatTTCTTGCTCTTAGCCAGCGGCAACAAGGAGCAGGCGCTGAAACGAAAACTCGACGCCGAGATCGAGAACGAGGACGGCAGCTCGACgttgcaccagcagcagcagaacaatCGCTCGATGATGCTCGTGGACGGTGGCGGCAGCCGCTCCAACGACGATTTCGCTAATTTGTGCTGGGCCACAACCACCAACAACACTACCAAGAGCAGGGACGAGCCCAAGGACAACGAGATAACCATACTGGCTGTGATAAACGACAAACatcagacgacgacgacgacagtcTGGCCCGGCAAGAAGATGCCGGACTCGCCGAGCACCGACGACAGCCTCATGAAGGAGCTGGACAAGGTCAGCGAGGATTACCGTAGCGGCGTCTGGTCGTCCCTGACGCAGGCGGCTGCGGTGCAGTCCTCGCCCTCGAgcgagatgatgatgatgagatCGCTGAGCCTCGCCGAGGTCACCGGCAGCATCgccaacaacgacaacaagaGCAGCAGCCAAGACTGCTGCGACGACTACTTCGCGCCTTTGGCCGATCATCCCAACGCCGTGGCTGTggtcgagctgcagcagcagcagcaacgggaCAACGATGACACatcgatgacgacgacgacgacgacggtcgAGGTGTCGATGATGAACGACGACAATGAGACTGCGAGGGGAAGTTTGTCGACCCTTCAGACCATCAACGAGGACTCGCTGAAGGAGCTGCTGAACAGTATAGCCGATAaatga
Protein Sequence: MAAIETIAIIDHNQQNNQHHHHHHDGGGSTTLKMCARLLACPLCSQPGFNTLDSLRAGLVSVATRALACPVCNEILMGIDKLTIHLFGHTIYSGGHNHNNNNNNNNNGHHRNNHHNNGNDHRGSNGNCVEPKIVELQQATRGPSGSTIWIEGNANAAVGSAACLDDGGKLLNGNDGASIFIPIEEIENFRSNSSNNNKQQDQHHLIGNDNRTVVLQNIGGGGNLLPVNAMSGADFANDKIGKESYTQTDWSKNSNEQQQQPQQLETRTDMLAELVKNAQITASPFPVSNYEPTTSDGNNIDNDDDDNDNDRVVVEVAASAKPIVTSQRLLAKDERPERCDICGFGFPDLKILLLHKQIAHRVPEAQARLGPEQLHMKNFPCHLCSKVFTIKGSLMVHMKVAHPGVNRPVNPDRHEMKESEGCIYKKTDKGFECPNCGKVFTKEQNIIQHIQTHDSKQWECDVCCKLFTTKYFLKKHKRLHSGEMPYKCGLCDKTFTFQQSYHKHKLYHKDEKPHECKTCGRAFKELSTLHNHERIHTGEKPFECESCGKCFRQRVSYLVHRRIHTGVMPYECTICGKKFRYKVSQRTHKCVPSSNSTATASGSSNADSSARAAATATFQSEGDNATVYPDVNPNNNSNSSSGSNFLLLASGNKEQALKRKLDAEIENEDGSSTLHQQQQNNRSMMLVDGGGSRSNDDFANLCWATTTNNTTKSRDEPKDNEITILAVINDKHQTTTTTVWPGKKMPDSPSTDDSLMKELDKVSEDYRSGVWSSLTQAAAVQSSPSSEMMMMRSLSLAEVTGSIANNDNKSSSQDCCDDYFAPLADHPNAVAVVELQQQQQRDNDDTSMTTTTTTVEVSMMNDDNETARGSLSTLQTINEDSLKELLNSIADK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484190;
90% Identity: -
80% Identity: -