Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: salm
Assembly: GCA_000599845.3
Location: NW:782862-803107[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.8e-05 0.00029 20.6 0.9 1 23 443 465 443 465 0.98

2 9 2e-05 0.00032 20.5 2.1 1 23 471 493 471 493 0.98

3 9 2.1 34 4.7 1.8 3 23 870 890 869 890 0.92

4 9 1.5e-07 2.5e-06 27.1 0.6 1 23 896 918 896 918 0.97

5 9 0.0014 0.023 14.6 3.2 1 23 928 950 928 950 0.97

6 9 0.0074 0.12 12.4 1.9 2 23 1251 1272 1250 1272 0.97

7 9 0.028 0.46 10.5 1.3 1 15 1278 1292 1278 1292 0.96

8 9 3.6e-06 5.9e-05 22.8 2.1 3 23 1565 1585 1563 1585 0.96

9 9 2.7e-07 4.4e-06 26.3 0.8 1 23 1591 1613 1591 1613 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.8e-05	0.00029	20.6	0.9	1	23	443	465	443	465	0.98
2	9	2e-05	0.00032	20.5	2.1	1	23	471	493	471	493	0.98
3	9	2.1	34	4.7	1.8	3	23	870	890	869	890	0.92
4	9	1.5e-07	2.5e-06	27.1	0.6	1	23	896	918	896	918	0.97
5	9	0.0014	0.023	14.6	3.2	1	23	928	950	928	950	0.97
6	9	0.0074	0.12	12.4	1.9	2	23	1251	1272	1250	1272	0.97
7	9	0.028	0.46	10.5	1.3	1	15	1278	1292	1278	1292	0.96
8	9	3.6e-06	5.9e-05	22.8	2.1	3	23	1565	1585	1563	1585	0.96
9	9	2.7e-07	4.4e-06	26.3	0.8	1	23	1591	1613	1591	1613	0.98

Sequence Information

Coding Sequence: ATGCAGTTGATGCGCTGGAGTATCATTAATCGCAGGAGCATGGAAAATCAAAACGAGAAGGCGACGGTCGTCGATCAAATTGTCGAACAACAAAAGAAAACCAATTGCGAGATGAGCGAACAAACAGTCAACACAGTTGTCCGAGAGCCGATAGGTGATGAAAATGAGTCACATTCAGATGGCGAGGGTAGCGAAGCTGCCGTCGATCTGTCCTCGGCCAAGTCTCAAAACGAAGACGACTTGGAAGCCGACGAGCCGTTACGAAGCAATCATCACAACAACGCGGCGGACATCAGCGAGAATGcacaggacgacgacgaggacgaggccGGCGAAGGCAAGCAAGGGCCcaaacagcatcagcagcagaaaaaaagtcaaaagcgCCCCTCCtccgaggacgaggaggaggacgaggaggaagaCGAGCACTCGAGCAAGCGCATGCGGCTCTGCGAGGACGCCGAGAACAATAACAGCCTCGTCGAGGGTGGAGCCCAACCAGCGGTCGCATTTCCCACCGCGGGAACTAGTCACGTCACTCTCGAAGCTCTCCAGAACACAAAGGTCGCGGTCGCCCAGTTCGCGGCTACGGCCATCGCCGCGGGCGCCGACACGGAGGAGACAATACGAGAGTTCGCCGCCCTACAGAGCACCCTCTTCACGCTGCAGCACCAGCAGGTTTTTCAATTGCAGTTGATCAATCAGCTGCAGGCTCAGCTGCAAATGGCGGCGGTCAACGAGCAGGCCAAGGAGCAGGCCAAGAACAGCGAATCTTCGGCTGCCGAGGCCAAcaatagcagcagcgcagccgCCACCGCGGAGAGCAGCAAGGAACCGTCGCCCTCGCCGATTCTGCCGATAATCATGCCCAAGCCGCTCTCGTCTCTGACGTCGCCCGCGCACTCGAGGCCGTCGAGCCAACACCAGGAACCACCGCCGCAGTCGAGCTCGCCCCCGACGAACCCGGACAGGCCGAgtatcgcgcgcgccaagagCCGCTCGCCGCCGATGCAAGCGCGCCCCAGCGTCACCAGCCCGTCGAATCTTCCGATTTTGGCGCCACCGTCGCATCAGGTGCCGGCTCTGTGCTCCATCAGCTCGTCTCTGGCGTCGACCATCATCACGAACAACGATCCGATGCCTCTGAACGAGCCGAACACATTGGAGGTTCTGCAAAAGCGCGCCCAAGAAGTTCTCGACAGTGCCAGCCAaggccttttggctaacaaCTTGGCCGACGAGCTGGCGTTCCGAAGCTCCGGAGGCAAGTCCCGCCTATCTCCGTACGATAAAGGTAACGGGCGCGGAGAACCCTTTTTCAAGCATCGGTGTCGATATTGCGGAAAAGTTTTCGGGAGCGACTCGGCCCTGCAAATTCACATCAGATCTCACACTGGAGAGAGACCATTCAAATGTAACATATGCGGTAGTCGATTTACAACCAAAGGTAATTTGAAGGTACACTTCCAGCGACACAAAGAGAAGTTCCCCCACGTGAAAATGAATCCCAATCCGATTCCGGAACACTTGGATAAGTACCATCCGCCTCTAATTCAGCAAATCGTAAATCGCAATGTGAATTCATCGCCTCCGATACCAGTTGGACCAATGGCTGCCATAACCGGCCCTAGTCCATACGGAGCTCCATTTTTGCCGCCTCAGGGACCTTCCATCAATGCGTTAcctggtaatttttttcggcCACCCATGATGAATCCGATTCAACCTCGAGAGATGCCTCATCAGCCGATCAACTTGGAACAAGATAAACCGGCCGACTTGAGTATATCTTCCAACAACGTTGAAGCCGTCTCCCCAGCACATTCGCCTGTCCCCCAATCGAATCCCAATAATTCAATGTCGATGAATGAAAAGCCAAAGCCAATGGATGAATCAACCGAAGAGACGGTTAAAAGGGAGGAAGAACGTCCAGCGATGGACACCAGTGATTTTcggcaacatcagcagcagcagcagcagcaacagcaaacCCAGGAGCAAACCTCCGCGGATAACGAGGCTTCCGAACGCATAATGCCGAAAAACGAGCCCGAAGACGTAGAGGAGACAAACGAGGAGGAGGAATTCGAAGGCTCGACCAATCAGCCCAGCAACAGTCAAGCCTTCGAGGATTGCAGTATGGATAGCAAAAGAAGCATGAGTCGCGATAACGAAGACGACGATTGCGACGATCAGCCGGAGAACCTCTCGAGTCGAGCCAATCCGGCTTCGATGCTGCAACAGTCGATGACCTATCCCGACGCCTCGCCCGCCGGCAGCAgccacagcggcagcagcggcagcatgcAGACTTCCTTCGCTAACATATTGTTTCCGAATCTGCCGCCACACACGACGCAACTCGCAGGCCACCCGACCGCTGCGAGTCAGAACATGAGCATGAGCATGGCTGgaggaggcggcggcggcccggAAACGATAGATCCAGCCCGCGATCCAGCCATCTACTCGAATCTGCTGCCCCGGCCGGGTAGCAACGACAACTCCTGGGAGAGCCTCATCGAGATCACCAAGACGTCCGAGACGtcgaagctgcagcagctcgtcgacaACATCGAGCACAAGCTGACGGACCCGAACCAGTGCATCATTTGCCAGCGCGTGCTCTCGTGCAAGAGCGCCCTGCAGATGCACTACAGGACGCACACCGGCGAGCGGCCCTTCAAGTGCAAGATCTGCGGCAGGGCCTTCACGACCAAGGGCAATCTCAAAACGCACATGGGCGTGCACCGAGCCAAGCCCCCGATCAGGCTGCTGCATCAGTGCACGGTATGCCACAAGAAATTCGCCAACGCCTTCGtcctgcagcagcacatcaACCTCCACACCAACGACCCGACCGAGCTGACGCCCGACCAGATTCGCGCCGCCGAGGTGCACGACTTCCCGCCGGCCGGATACCCCCCGCTGGCGGCTTTCCTGCCACAAGGCTTCCCGCCGCTTCATCCGGCGGCGGCCTTTCCCCTGGGCTTTCCCGGCCCCATGAACAACATGGAGCACTCGGGCCTCGACGTGGACGAGCGCGACTCGGTCGACTCGCTGCAGAGGCAGCAGCTGCAACAGATTCGCCAGCAGCAGGCGCGCATGCTCGGGGAACGAGAGCAGGTCtacgagctcgacgacgaggaggacgacaGACGCCAGGAGAACGACGAGAGGTGCGACGatcgcagcagcgacggcgacGACAAAGACAACGGCAAGTACGCGATGGAGAAGCAACGCAGGTCGAGCCCATCCGCCACGGTGACGTCCAACTCGCCGCCGATGCAGCGCTACAACGGCAGCGAGCGCAGCGACAGTCCCGTCAACAACGCGCCCAACGTCTCGTCGGCGCCGCTGGACCTGACGCCGAGGGCCTCCTCGACGCCGGCTTCGGTGAGCCCAGCCCCACAGTCGCCCCAGTCCCAGCAGTCGCAGCAGGCCCCGCCGCTGCCCAGCACGGCGCCCGCCACCCCGACCAGCGTCGCCTCGAATCCGGTCGCGGCCGCGGCCGCGGCAGCCGCTGCGGCGGCCCATCCGGCCTTCGGCATGTTCGCCGGCCTGCTTCAGGCCGTGGGCTCGGCTCCGGGTGTCGTGCCCGGGGTCGTGCCGCCCAACGCCGTGAGTCCCGGCCCGGCCGGAATCGGCCCACTGGCCTCACTCACCAACAGAGCCGCTACGGCCACCTCCAGTTTCAACCCGCTCGGGCTCGCGGTTGGCGGCTCGGCAGTACGCGGCAATACAACTTGCAACATCTGCTACAAAACGTTCGCGTGTAATTCAGCCCTGGAGATTCATTACCGTAGCCACACGAAGGAGCGGCCCTTCAAGTGTTCTATCTGCGACCGAGGCTTTTCGACAAAGAGCAACGAAGTAGACGTGACGCTCACGGGCAAGAGATTGGATAAGTGTCGTtgcgccgagcgcgcgcgacgcagcGCACGCGAAAAAGCTCGCAGGAGACGGAAGGCCGAGGAACGGCTTCGACTCCAAGGGCGGACGGCAGCTAACATTAACGGCGCTAATGCAAATAATGCAAGCTTGCTTAAGATGATCGGCAATGCTAACGGGGGCAGTGGTGGCGCTCATAGGACCCATGCTATTAACCAGCTCTATGGGGACCTCGTCAGCCTGCCCCCGATCGTCGGCCGTATCGAGCCGTCCGCCCTCGGAGGTCTGCTGAGTTCCGATACTACCGTCTTCCTGGGAAATATGAAACAACACATGTTGACTCACAAGATCCGCGACATGCCTCATCATCTATTCGGTGACTCGAAATCTCGAGACTCTCAACCACCGCAGCAAGCTCCACCTCCCCCGCCTCCGCCACCACCTCCGAGCTCATCGTTACTGCCCACCCTTCAGGTGCAGGTTGTACCACCGCCCCCTATGCCAGTGGTGTCGCAACCGCAAATACCCTCTCAAGGTCAaatgcagcaacaacagcaacagcagccgtTGTTATCGACGACgcttcaacagcagcagtcctTGTTACCCGCGACGATGCATCATCATGAGGCCTCGCACCTCCAACGCGAACAATCCCGAAGTCCTATTTCGTCAGCCGATGAAGGAAACATGACGTCCATTCCTCAACAGTCACCCGATGCCGGTTCCGTTAAGAAGAATTCTGTGCTGGATAACGACAAGAGATCACCGAGCATGCCCAGCAACAAGCATTTGTGCCAGGTTTGCAATAAGAATTTCTCCTCGTCCTCGGCGCTTCAGATCCACATGAGAACGCACACCGGTGACAAGCCTTTTCAGTGCACCATCTGCCAGAAGGCCTTCACTACCAAGGGCAATCTTAAGGTACACATGGGTACGCACATGTGGACCAACGGGGCATCTCGTCGAGGACGGCGCATGTCATTGGACATACCATCGCTCCCAATCTCGCCCAAGGACTCAGAATTTCTGCAGCGAAGGCCGGACCTTTTCTATCCGTATCTACCCGCGCCCTTCCTTAATGGTGTGCCCCCACAAAAGTTGAACGAGATGCCAACGGCACCGGGGAGCAACGGCCTCGGCCTACCAGCCGGCACTAATCACACCAAGTACGCCGGCCTCTTCGGCTCGGTGTACGCGGCCGCGGGCTTCCCGTCCAGCAACGAGCTCGCGGCGATGAAGTCTCAACTGGCGCCTCACCATCAGCACCATCAGCGTctgcagcaacatcagcagaTGCATCACAATCCTCATCATCCTCTGGGCGGCGCCAATGGACCAGTGGCCGACGGCATTCTGGGGCCAAAGTCGATGCTGTTCCAAAGTCATCCGGGAGCGGCCAGTCCACCGTCGCCGTCGCACTCGCCGATCGTGCCCGGCAGCTGGAGCAGCGTCGTGACCGAAGGTATGAAGCaccatcatcagcagcagcagaggatACTGCAATTCGAGCGCGAGCAGTCGGTCGTACCCAGGCCGGACAGTCCAGCCACGGCTGCTGGTTCTCCGCCGAGATTGCCACCGACCGCGACGAGAGAAGGATTGGCGGCTTAA
Protein Sequence: MQLMRWSIINRRSMENQNEKATVVDQIVEQQKKTNCEMSEQTVNTVVREPIGDENESHSDGEGSEAAVDLSSAKSQNEDDLEADEPLRSNHHNNAADISENAQDDDEDEAGEGKQGPKQHQQQKKSQKRPSSEDEEEDEEEDEHSSKRMRLCEDAENNNSLVEGGAQPAVAFPTAGTSHVTLEALQNTKVAVAQFAATAIAAGADTEETIREFAALQSTLFTLQHQQVFQLQLINQLQAQLQMAAVNEQAKEQAKNSESSAAEANNSSSAAATAESSKEPSPSPILPIIMPKPLSSLTSPAHSRPSSQHQEPPPQSSSPPTNPDRPSIARAKSRSPPMQARPSVTSPSNLPILAPPSHQVPALCSISSSLASTIITNNDPMPLNEPNTLEVLQKRAQEVLDSASQGLLANNLADELAFRSSGGKSRLSPYDKGNGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNICGSRFTTKGNLKVHFQRHKEKFPHVKMNPNPIPEHLDKYHPPLIQQIVNRNVNSSPPIPVGPMAAITGPSPYGAPFLPPQGPSINALPGNFFRPPMMNPIQPREMPHQPINLEQDKPADLSISSNNVEAVSPAHSPVPQSNPNNSMSMNEKPKPMDESTEETVKREEERPAMDTSDFRQHQQQQQQQQQTQEQTSADNEASERIMPKNEPEDVEETNEEEEFEGSTNQPSNSQAFEDCSMDSKRSMSRDNEDDDCDDQPENLSSRANPASMLQQSMTYPDASPAGSSHSGSSGSMQTSFANILFPNLPPHTTQLAGHPTAASQNMSMSMAGGGGGGPETIDPARDPAIYSNLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCIICQRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPIRLLHQCTVCHKKFANAFVLQQHINLHTNDPTELTPDQIRAAEVHDFPPAGYPPLAAFLPQGFPPLHPAAAFPLGFPGPMNNMEHSGLDVDERDSVDSLQRQQLQQIRQQQARMLGEREQVYELDDEEDDRRQENDERCDDRSSDGDDKDNGKYAMEKQRRSSPSATVTSNSPPMQRYNGSERSDSPVNNAPNVSSAPLDLTPRASSTPASVSPAPQSPQSQQSQQAPPLPSTAPATPTSVASNPVAAAAAAAAAAAHPAFGMFAGLLQAVGSAPGVVPGVVPPNAVSPGPAGIGPLASLTNRAATATSSFNPLGLAVGGSAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCSICDRGFSTKSNEVDVTLTGKRLDKCRCAERARRSAREKARRRRKAEERLRLQGRTAANINGANANNASLLKMIGNANGGSGGAHRTHAINQLYGDLVSLPPIVGRIEPSALGGLLSSDTTVFLGNMKQHMLTHKIRDMPHHLFGDSKSRDSQPPQQAPPPPPPPPPPSSSLLPTLQVQVVPPPPMPVVSQPQIPSQGQMQQQQQQQPLLSTTLQQQQSLLPATMHHHEASHLQREQSRSPISSADEGNMTSIPQQSPDAGSVKKNSVLDNDKRSPSMPSNKHLCQVCNKNFSSSSALQIHMRTHTGDKPFQCTICQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDIPSLPISPKDSEFLQRRPDLFYPYLPAPFLNGVPPQKLNEMPTAPGSNGLGLPAGTNHTKYAGLFGSVYAAAGFPSSNELAAMKSQLAPHHQHHQRLQQHQQMHHNPHHPLGGANGPVADGILGPKSMLFQSHPGAASPPSPSHSPIVPGSWSSVVTEGMKHHHQQQQRILQFEREQSVVPRPDSPATAAGSPPRLPPTATREGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484169;
90% Identity: iTF_01484169;
80% Identity: -