Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:934297-937677[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.11 1.8 8.7 0.9 3 23 239 260 238 260 0.96

2 9 0.00041 0.0067 16.3 1.0 1 23 294 316 294 316 0.97

3 9 0.00026 0.0043 16.9 3.8 1 21 322 342 322 344 0.93

4 9 9.6e-07 1.6e-05 24.6 0.8 1 23 353 375 353 375 0.98

5 9 4.6e-07 7.5e-06 25.6 0.5 1 23 381 403 381 403 0.98

6 9 4.4e-06 7.1e-05 22.5 1.0 1 23 409 431 409 431 0.97

7 9 5.1e-06 8.2e-05 22.3 1.2 1 23 437 459 437 459 0.97

8 9 0.00058 0.0095 15.9 2.5 1 23 465 487 465 487 0.98

9 9 0.00023 0.0038 17.1 6.2 1 23 493 516 493 516 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.11	1.8	8.7	0.9	3	23	239	260	238	260	0.96
2	9	0.00041	0.0067	16.3	1.0	1	23	294	316	294	316	0.97
3	9	0.00026	0.0043	16.9	3.8	1	21	322	342	322	344	0.93
4	9	9.6e-07	1.6e-05	24.6	0.8	1	23	353	375	353	375	0.98
5	9	4.6e-07	7.5e-06	25.6	0.5	1	23	381	403	381	403	0.98
6	9	4.4e-06	7.1e-05	22.5	1.0	1	23	409	431	409	431	0.97
7	9	5.1e-06	8.2e-05	22.3	1.2	1	23	437	459	437	459	0.97
8	9	0.00058	0.0095	15.9	2.5	1	23	465	487	465	487	0.98
9	9	0.00023	0.0038	17.1	6.2	1	23	493	516	493	516	0.98

Sequence Information

Coding Sequence: atgaCGGCAAACGGCGATAATGCCCACGGGATGACACAGGCGCCCTCGAAAGCGGACCTCATTATCAATCAGCACTGCAGGTTGTGCGCCAGAATTGCCGACAGACTCGTCGGCATCTTCGAAACGGAGGGTCGCCAGCACGACGTGCAGAGCAAAATCGAAAAGTGCCTTCGCATACAGATTTCAACTGCAGATTCTTTGCCACAAGCTATTTGTTACaactgtttaaaaatattgaatcaatctaatgatttttacatcaaaagtAATGATGCTCAATTACTTCTCAAGAAAGTATTTTTAGAATCTGAAAaatcactgaaaaaaaatacaagttttaCGGATTCAAATAATCATacctcttcaatttttttacccgAGTTCAAAGATTGTTCAAGTGATGATAGTCGTGATAATCACAATGATAATATGAGTAACTATTCTTTGAACAATAcagatattgaaaataatgaaaatattggaGACCaagatgtaaaaaatcaaaaaattgcaagaaaagtaaaaagaaaaaacaatgaaaacaaAACTAATTGCataaaagaagataaaaaaaatagaaaaagaccTGATAATTATATGACTGGAACTGACTCTGATATGGAGATGTTGATTAgcactgaaaaaaaaccttcaaaTTTACTCCAAAAGtcaggtacaaaaaaaagagagaaacaatttAGATATCCTTGGCTGTGTACAGACTGTAATGAAAAACTACCTAGCTTAGAAACCCTCAATGaacatcataaaaatattcacaatCAAGATTCTAAGTTcatgtgtgtgctgtgctgtaaaatttacaataaatattatggTTTTCTAGCACATgttaaaaaacacaaaaatttaCCTCAATACAGctGTGATGAATGCGATAGAATGTTTgttcataaaaaagtattagaaACTCACAAAGCAATCCACAGTAATGAGAGACCTTTCATTTGCTCAACATGTGGAAAATCTTTCAAGCAACAAAGTGCGCTTTATACTCATTCAAGGTGCCATTTACcagaggataaaaaaaataaatatccttGTGATCAGTGCGATAAAAAATTCTCTACAAAACCAAATTTAATAACACACAAACGAATTCATGCTGGTATCAGAAATTTTACTTGTGACCAATGTGGGAAAAGTTTTATACAAAAAGGTAATCTGGAGGCACATTTTTTAACACATTCCGCTGAAAAACCATTCAGCTGCTCTGAATGTCCAAAATCATTCAAGACTTCGCTGTTATTGAAAAAGCACATAACTGTTCATACTGGTGCTAAACCTCATGAATGCAATGTATGCGGTAAAACATTTCGAGAAAAAGGAACTCTACGTGAACACGAAAGAATTCATACTGGAGAAATGCCGTTTTCTTGCGAATTTTGTGGAAAATCTTTTAGATTCAAAGGCATATTGACTACTCATCGTCGACAACATACTGGTGAACGACCTTATAGTTGTCAAGAATGTCAGCATCATTTCACCAACTGGCCTAACTATAATAAACACATGAAACGACGTCATGGAATTGACACCTCAGGTTCTaaaaagaaactaaaaaacaaaacaactcAAGAGAATTTACAAAGTTCACAATCAATGGAAATTAATGAAAGTGTAACTTCTCAACCATGTCCAATAATAGTTCAAGTAATTCAGGCAGTACCTCATGTCACTATGGCTCAATCAATTGTTCTACAGACTGATTCATCTAATTCAGCTACAACTGCTCAAACGTATGCTGAAcctaatgaaattttaccaaCCATAATGCATGATACATATCAACAAAGACCAATAGCATCTCAAAATTATGGAGGACCTCCATTGGCTACATTTATGCAGACTTATTCCAACTTATACAGCGTATCTGAAGCTAATAATACTATCAATCATAGATAA
Protein Sequence: MTANGDNAHGMTQAPSKADLIINQHCRLCARIADRLVGIFETEGRQHDVQSKIEKCLRIQISTADSLPQAICYNCLKILNQSNDFYIKSNDAQLLLKKVFLESEKSLKKNTSFTDSNNHTSSIFLPEFKDCSSDDSRDNHNDNMSNYSLNNTDIENNENIGDQDVKNQKIARKVKRKNNENKTNCIKEDKKNRKRPDNYMTGTDSDMEMLISTEKKPSNLLQKSGTKKREKQFRYPWLCTDCNEKLPSLETLNEHHKNIHNQDSKFMCVLCCKIYNKYYGFLAHVKKHKNLPQYSCDECDRMFVHKKVLETHKAIHSNERPFICSTCGKSFKQQSALYTHSRCHLPEDKKNKYPCDQCDKKFSTKPNLITHKRIHAGIRNFTCDQCGKSFIQKGNLEAHFLTHSAEKPFSCSECPKSFKTSLLLKKHITVHTGAKPHECNVCGKTFREKGTLREHERIHTGEMPFSCEFCGKSFRFKGILTTHRRQHTGERPYSCQECQHHFTNWPNYNKHMKRRHGIDTSGSKKKLKNKTTQENLQSSQSMEINESVTSQPCPIIVQVIQAVPHVTMAQSIVLQTDSSNSATTAQTYAEPNEILPTIMHDTYQQRPIASQNYGGPPLATFMQTYSNLYSVSEANNTINHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484117;
90% Identity: iTF_01484117;
80% Identity: -