Tpre008368.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:350863-352972[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7.6e-06 0.00012 21.8 1.3 2 23 211 233 210 233 0.95 2 10 0.022 0.36 10.9 0.2 2 23 240 262 239 262 0.94 3 10 0.017 0.27 11.3 0.3 1 22 268 289 268 291 0.89 4 10 3.4e-05 0.00056 19.7 2.0 1 23 342 365 342 365 0.96 5 10 7.5e-06 0.00012 21.8 1.2 1 23 371 394 371 394 0.97 6 10 0.00019 0.0031 17.4 1.0 1 23 400 423 400 423 0.94 7 10 0.00058 0.0094 15.9 3.1 1 23 429 452 429 452 0.94 8 10 0.00014 0.0023 17.8 1.5 1 23 458 481 458 481 0.97 9 10 5.8e-05 0.00094 19.0 2.0 1 23 487 510 487 510 0.96 10 10 0.00032 0.0052 16.7 0.3 1 23 516 539 516 539 0.97
Sequence Information
- Coding Sequence
- ATGGAGAGCCAAGAGGACGAAGTTGGAGTGAAGGAAGAGTTGACTGATACGTGGCCGGATCCAGGTGacgattatattttatattcgatGGACACTTGCGAGGCTGAAAACCATGAAACATTCCCGCTTTATGAACCATCGaaTATAGGGGAGGTTCAAGAAAGGTTAGACGatataatattcattgattGCGGTGGCGAAGATGTCAAATCCGAACCACCGTCTTCGTCGACCACCGTCCACGAAATCGATTATGAGAATTATCCACCTATCGAGGAAGTAGACGACCAAATTCAGACAAATTACTGGAATCGAAAAGAGCTGATAgttttgataaagaaaaatttcgactATCACAATAACTgttattttcaagtaataCCCCGATACGAATACGACGAATACGAGGACgtaagaaaatttagaaagaAATCTCGTACCAAGTCGTCTTATGAGGGTAAAAGGCGTCGaaaagctattaaaaaagaagaagagccaTACTATGcacatatcgataggaaacaCGAGATCATTAGATCGTACGAGAGCATTCGATtgtacaaatcatttggacggaaaaaaaagatcagaTGTCGTCCGAGTGCAGCGTATGATCGAAGGAAACCCTTAAAGTGTCAAATTTGTCAGAAATCGTTCGCATATCAGGATAAACTCAAACGACATATATACAAGGTACACAATCCGAGCAACATagtcgaatgtgagatttgtccaAGTTCGTTCAGCTGCAAAGATTACCTCAACGAACACATCAACGCCGTGCACGACAGTGATAACTTTTACAAATGCGAGATTTGTTACCAATCGTTTGAATATCAGTTTTTACTCGATTTACATGTCGATGCTGTGCATAATGGTAACAAATTCAAGACTCATCTCGACCAAGGCACGAGCTCGGTTTATTATGAAAAGCAATCGATTGAAGATAATATTGATCAAAAAGCATACGTTGATGATTACATCGAAGCTCACGAAAATTCAGTTCGCGATCACGAGAAACCCTTCCAATGTGgcacttgtcacaaatcatttggacgaagaGACAAACTCAATCAGCACATCGATTCCGTACATAATCCagtcaaacccttcgagtgtcaGATTTGCCAGAAATCGTTCAAATACAAGCAATCCTTGGAAAATCACGTGAACTCGGTGCACGATCCTagaaaacccttcgagtgCGAGGTTTGTCGCAAGACGTTCGAAACCCAGAATAAGCTCAAAATTCACACGAGTCAAGTACACAACCGGAACAAAATCTTCGAATGCGACGTATGCCACAAAACGTACGCACAAAGATGTCACCTCGAGATTCACGTGAATGCGGTACACGATCGGAGCATCGTCTACGACTGCCAGtattgttacaaatcattcgGATACCAGCAAACCTTGAAAAATCACGTAATGACGATACACAAGGGTATAAAACCTTTCGAGTGCGAcgtttgtcacaaatcgttcGGATACCAGCAGACCTTGAAAAATCACACGAGAGCGGTACACGATCGCGTGAAAACCTTCGAATGTGGTATTTGTCGCGCGTCGTTTGGATACGAGAGGGAactcaaaaaacacatgacgacagtacatgatcgtagtaACCCGTACGAATGCGAGATTAGTTTCGAGACATTTTGA
- Protein Sequence
- MESQEDEVGVKEELTDTWPDPGDDYILYSMDTCEAENHETFPLYEPSNIGEVQERLDDIIFIDCGGEDVKSEPPSSSTTVHEIDYENYPPIEEVDDQIQTNYWNRKELIVLIKKNFDYHNNCYFQVIPRYEYDEYEDVRKFRKKSRTKSSYEGKRRRKAIKKEEEPYYAHIDRKHEIIRSYESIRLYKSFGRKKKIRCRPSAAYDRRKPLKCQICQKSFAYQDKLKRHIYKVHNPSNIVECEICPSSFSCKDYLNEHINAVHDSDNFYKCEICYQSFEYQFLLDLHVDAVHNGNKFKTHLDQGTSSVYYEKQSIEDNIDQKAYVDDYIEAHENSVRDHEKPFQCGTCHKSFGRRDKLNQHIDSVHNPVKPFECQICQKSFKYKQSLENHVNSVHDPRKPFECEVCRKTFETQNKLKIHTSQVHNRNKIFECDVCHKTYAQRCHLEIHVNAVHDRSIVYDCQYCYKSFGYQQTLKNHVMTIHKGIKPFECDVCHKSFGYQQTLKNHTRAVHDRVKTFECGICRASFGYERELKKHMTTVHDRSNPYECEISFETF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01483037;
- 90% Identity
- -
- 80% Identity
- -